These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1140 fasta sequence [AAAGCATTCAGTGCTCTTCTCTCTCTCCTTCTCCTTCACTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAGGTGTTGTCAAGAAGGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTTGAGTGTATTGGAACCTCCAACTGGTAACGAAGACGATGATGATATTGATGGCAACAATTCGTTCTGTAGCAGTTCCGACATGGGAGACAAAGACATGGACTATT---CGAGCATAGAGTACCACAAACCAACAAAGCCAAGAGTTCGGCATACAAGGCCCTGGTCTTCCTGTATAAAATCCAGCAACCGAGGCAATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCTACGCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCAATCTCAATTATTGGATGGAGATAAAATACTAGTGCTAAAAAAAAAAAAA] [+] EMBL AK102406 [AAAGCATTCAGTGCTCTTCTCTCTCTCCTTCTCCTTCACTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAGGTGTTGTCAAGAAGGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTTGAGTGTATTGGAACCTCCAACTGGTAACGAAGACGATGATGATATTGATGGCAACAATTCGTTCTGTAGCAGTTCCGACATGGGAGACAAAGACATGGACTATT CGAGCATAGAGTACCACAAACCAACAAAGCCAAGAGTTCGGCATACAAGGCCCTGGTCTTCCTGTATAAAATCCAGCAACCGAGGCAATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCTACGCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCAATCTCAATTA ] [+] EMBL OSR14962A [ TCTCTCCTTCTCCTTCACTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCG ] [+] EMBL AU225188 [ TTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAGGTGTTGTCAAGAAGGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTT ] [+] EMBL CF304994 [ TTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGAGAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAGGTGTTGTCAAGAAGGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTTGAGTGTATTGGAACCTCCAACTGGTAACGAAGACGATGATGATATTGATGGCAACAATTCGTTCTGTAGCAGTTCCGACATGGGAGACAAAGACATGGACTATT CGAGCATAGAGTACCACAAACCAACAAAGCCAAGAGTTCGGCATACAAGGCCCT ] [-] EMBL CA762525 [ AAACTGCAAAGGAATGCTTTGAGTG AATGGACCCTCC ACTGGTACCGAAGCCGATGATGATATTGATGGCAACAATTCTTTCTGTAGCAGTTCCGACATGGGAGACAAAGACATGGACTATTTAGCGAGCATAGAGTCCCNCAAACCACCAAAGCCAAGAGTTCGGCATACAAGGCCCTGGTCTTCCTGTATAAAATCCAGCAACCGAGGCAATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCTACGCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGT ATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCATGTTCGCACAGTGTCAGCAACTGACCAATCTCAATTATTGGATGGAGATAAAATACTAGTGCTAAAAAAAAAAAAA] [+] EMBL AU095455 [ atcCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCAATCTCAATTATTGGATGGAGATAAAATACTAGTGCTAAAAAAAAAA ] consensusID : consensus_11761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [TTCCCCCTCCCCCCAAACCCAAGAGTTTCGGCATACAAGGCCCTGTCTTCCGGTATGAAAATCCAGCAACCGAGCATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAACTTGGAACTCCTACCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCATCCATCAAAGGAACAGCTCTT-CCAT-GGGGTCCAGCAGCATTTTCAGTCTCAGC-ATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCATCTCAATTATTGGATGGAGATAAAATACTAGTG-CTA-GTACAGTGTGAAGCTATGATGAATTATTGGTCAA-CTTGATGCAAAAAATTTCTATCCAAAAAAAAAA] [+] EMBL BI798825 [TTCCCCCTCCCCCCAAACCCAAGAGTTTCGGCATACAAGGCCCTGTCTTCCGGTATGAAAATCCAGCAACCGAGCATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAACTTGGAACTCCTACCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCATCCATCAAAGGAACAGCTCTT CCAT GGGGTCCAGCAGCATTTTCAGTCTCAGC ATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCATCTCAATTATTGGATGGAGATAAAATACTAGTG CTA GTACAGTGTGAAGCTATGATGAATTATTGGTCAA CTTGATGCAAAAAA ] [+] EMBL BI804846 [ TCTTCCCATGGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTT CAGGTGATTCTGGGCTTCATCCA GCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGACCATCTCAATTATTGGATGGAGATAAAATACTAGTGCCTAGGTACAGTGTGAAGCTATGATGAATTATTGGTCAACCTTGATGAAATGACTTTCTATCCAAAAAAAAAA] consensusID : consensus_11761#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [NCGAGGCGGCCGCTCGAACCTCTAGAACCTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGANAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGNTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGANCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAAGTGTTGTCAAGAAAGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGACGTGAAGCTT] [+] EMBL C73007 [NCGAGGCGGCCGCTCGAACCTCTAGAACCTTTCTCTCTCCTCTTCTTCATGCTCGGATTTCCCTCTCTCGCGCATCGATCCGTCGCCTCGGCGCACAATTCGGGCTCGGAATCGGGTCCCTGATCCGCGACACCGCCCGGCTCGATCGTTTCCCGGGCTGATTCGGTGGCCATTGCGGCGAGATCGGAGCAGGGANAGATCAGGGCAGAGAATCAGCATGATGATGGAGACTGAGCTATGCTCCTCCCGGGNTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGANCTCTCGGTGCTTCCTCGGCACACGAAGGTCATCGTCACTGGGAACAACCGAACAAAGTCCGTCTTGGTTGGCCTACAAAGTGTTGTCAAGAAAGCTGTTGGTCTTGGAGGTTGGCACTGGCTGGTTCTAAAGAATGGTGTAGACGTGAAGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11761#0 ------------------------------------------------------------ consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 TTCCCCCTCCCCCCAAACCCAAGAGTTTCGGCATACAAGGCCCTGTCTTCCGGTATGAAA 60 consensus_11761#0 -----------------AAAGCATTCAGTGCTCTTCTCTCTCT-----CCTTCTCCTTCA 38 consensus_11761#2 -----------------------------NCGAGGCGGCCGCT-----CGAACCTCTAGA 26 consensus_11761#1 ATCCAGCAACCGAGCATTTTCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAA 120 * * * * consensus_11761#0 --CTTTCTCTCTCCTCT-TCTTCATGCTCGGA---TTTCCCTCTCTCGCGCATCGATCCG 92 consensus_11761#2 ACCTTTCTCTCTCCTCT-TCTTCATGCTCGGA---TTTCCCTCTCTCGCGCATCGATCCG 82 consensus_11761#1 ACTTGGAACTCCTACCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCC 180 * *** ** * ** ** * * **** *** **** * ** consensus_11761#0 TCGCCTCGGCGCA-CAATTCGGGCTCGGAATCGGGT----CCCTGATCCGCGACACCGCC 147 consensus_11761#2 TCGCCTCGGCGCA-CAATTCGGGCTCGGAATCGGGT----CCCTGATCCGCGACACCGCC 137 consensus_11761#1 ATCCATCAAAGGAACAGCTCTTCCATGGGGTCCAGCAGCATTTTCAGTCTCAGCATTGGA 240 * ** * * ** ** * ** ** * * * * * ** * consensus_11761#0 CGGCTCGATCGT--TTCCCGGGCTGATTCGGTGGCCATTGCGGC--GAGATC--GGAGCA 201 consensus_11761#2 CGGCTCGATCGT--TTCCCGGGCTGATTCGGTGGCCATTGCGGC--GAGATC--GGAGCA 191 consensus_11761#1 TGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCG 300 * * * ** *** ** * ** * * ** * *** *** * * * * consensus_11761#0 GGGAGAGATCAGGGCAGAGAA--TCAGCATGATGAT---GGAGACTGAGCTATGCTCCTC 256 consensus_11761#2 GGGANAGATCAGGGCAGAGAA--TCAGCATGATGAT---GGAGACTGAGCTATGCTCCTC 246 consensus_11761#1 CTCCTAGCCTGCTTCACAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCT 360 ** ** * * **** ** *** * * ** * * * * consensus_11761#0 CCGGGTTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGAGCTCTCGGTGCTTCCTCG 316 consensus_11761#2 CCGGGNTCTGTCTCCGCCTCGGTACGAGAGTGGCGATGAGGANCTCTCGGTGCTTCCTCG 306 consensus_11761#1 ATGTGGTTAAAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGT 420 * * * * ** * ***** * ** ** * * consensus_11761#0 GCACACGAAG-GTCATCGTCACTGGGAACAACCG--AACAAAGTCCGTCTTGGTT--GGC 371 consensus_11761#2 GCACACGAAG-GTCATCGTCACTGGGAACAACCG--AACAAAGTCCGTCTTGGTT--GGC 361 consensus_11761#1 GCATTTGATGAGTAATTCTTTTTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGT 480 *** ** * ** ** * * *** ** *** * * * consensus_11761#0 CTACAAGGTGTTGTCAAGAAGGC-TGTTGGTC-TTGGAGGTTGGCACTG-GCTGGTTCTA 428 consensus_11761#2 CTACAAAGTGTTGTCAAGAAAGC-TGTTGGTC-TTGGAGGTTGGCACTG-GCTGGTTCTA 418 consensus_11761#1 TCACACAGTGTCAGCAACTGACCATCTCAATTATTGGATGGAGATAAAATACTAGTGCTA 540 *** **** *** * * * * ***** * * * ** ** *** consensus_11761#0 AAGAATGGTGTAGAGGTGAAGCTGCAAAGGAATGCTTTGAGTGTATTGGAACCTCCAACT 488 consensus_11761#2 AAGAATGGTGTAGACGTGAAGCTT------------------------------------ 442 consensus_11761#1 GTACAGTGTGAAGCTATGATGAATTATTGGTCAACTTGATGCAAAAAATTTCTATCCAAA 600 * *** ** *** * consensus_11761#0 GGTAACGAAGACGATGATGATATTGATGGCAACAATTCGTTCTGTAGCAGTTCCGACATG 548 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 AAAAAAA----------------------------------------------------- 607 consensus_11761#0 GGAGACAAAGACATGGACTATTCGAGCATAGAGTACCACAAACCAACAAAGCCAAGAGTT 608 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 CGGCATACAAGGCCCTGGTCTTCCTGTATAAAATCCAGCAACCGAGGCAATTTTCACCCC 668 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 AGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCTACGCTGTGGAGA 728 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 TACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTC 788 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 CATGGGGTCCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGC 848 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 TTCATCCAGGCAGCAAAGAGGCTCAAGACCCTGTACCGCTCCTAGCCTGCTTCACAAAAC 908 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 CCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTAAAATTAATCTAG 968 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 TCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTT 1028 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 TTACTTTTTACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGTCAGCAACTGA 1088 consensus_11761#2 ------------------------------------------------------------ consensus_11761#1 ------------------------------------------------------------ consensus_11761#0 CCAATCTCAATTATTGGATGGAGATAAAATACTAGTGCTAAAAAAAAAAAAA 1140 consensus_11761#2 ---------------------------------------------------- consensus_11761#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||