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Oryza sativa
cluster # 11770 cluster # 11770       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11770#0 length = 1693 sequences # 5  
consensus_11770#1 length = 624 sequences # 1  
consensus_11770#2 length = 623 sequences # 1  
consensus_11770#3 length = 567 sequences # 1  
consensus_11770#4 length = 216 sequences # 1  

consensusID : consensus_11770#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1693
fasta sequence
                              [CGTGCGTTATTCTCCTTCTCTCCTCCCTGTACCTCCTCCGTCTCTTCGTCGACGCCCGCCGCAACCTGCCGCCGGGTCCCCGCCCGCAGCCGCTCATCGGCAACATCCTCGACCTCGGCTCCCAGCCGCACCGCTCCCTCGCGCGCCTCGCGGGGCGCTATGGCCCGCTCATGACGCTCCGCCTCGGCACCGTCACCACCGTCGTCGCCTCCTCCCCGGGCGCCGCCCGCGACATCCTCCAGCGCCACGACGCCGCCTTCTCCGCGCGCTCCGTGCCGGACGCCGCCCGCGCGTGCGGGCACGACGGCTTCTCCATGGGCATGCTCCCGCCCAGCAGCGCCCTGTGGCGCGCGCTCCGCAGGGTGTGCGCCGCGGAGCTCTTCGCGCCGCGCAGCCTCGACGCGCACCAGCGCCTCCGCCGGGACAAGGTGCGCCAGCTCGTGTCCCACGTCGCGCGCCTGGCGCGCGACGGCGCGGCCGTCGACGTCGGCCGCGCCGCGTTCACGGCTTCCCTGAACCTGCTCTCCAGCACCATCTTCTCCGCCGACCTCGCGGATTTCGGCGACGCCCGAGCTGAGTCGTCGGTGGGGGACTTAAGGGACTTGATCTCGGAGTTCACCATCGTCGTCGGGGTGCCGAACGTGTCGGACTTCTTCCCGGCCGTCGCGCCGCTCGACCCGCAGCGGCTGCGGAGGCGGGTGGCGAGGGTGTTCGAGCGGCTGCAGGCCGTGTTCGACGGGCACATCGAACGGCGCCTGCGGGACCGCGCTGCCGGGGAGCCGCCCAAGAACGATTTCCTGGACGCTTTGCTCGACTACCGCAGCCCGGAGGATGGCCGGGGTTTTGATCGGCCAACGCTACAGTTTCTGTTTACGGATTTGTTTAGCGCGGGAAGTGATACAAGCGCAGTAACTGTAGAATGGGCAATGGCTCAGCTGCTACAGAACCCACCAGCAATGGCGAAAGCTCGTGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCGACATTAGCCAGCTCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTCCGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGGTGCCCAAGGGCACCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGCTGGCTGTTCGCATGGTGTACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAGAGTTGGCTACGCCACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATATGCTACATTGCTACATACAATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAATAAAATCATATACTAGTAC-ATTCTGTTGTTTATGTCTGAAAGAGAGATC-AATAGGGGTGCCTGTACGGTAGTACTAAATGCCCGCAGCTATCTAACTGAGAAAGTCTTGAGTTAAAAAAAAAACCAGTGGCTTGAT]

[+] EMBL AK070050             [CGTGCGTTATTCTCCTTCTCTCCTCCCTGTACCTCCTCCGTCTCTTCGTCGACGCCCGCCGCAACCTGCCGCCGGGTCCCCGCCCGCAGCCGCTCATCGGCAACATCCTCGACCTCGGCTCCCAGCCGCACCGCTCCCTCGCGCGCCTCGCGGGGCGCTATGGCCCGCTCATGACGCTCCGCCTCGGCACCGTCACCACCGTCGTCGCCTCCTCCCCGGGCGCCGCCCGCGACATCCTCCAGCGCCACGACGCCGCCTTCTCCGCGCGCTCCGTGCCGGACGCCGCCCGCGCGTGCGGGCACGACGGCTTCTCCATGGGCATGCTCCCGCCCAGCAGCGCCCTGTGGCGCGCGCTCCGCAGGGTGTGCGCCGCGGAGCTCTTCGCGCCGCGCAGCCTCGACGCGCACCAGCGCCTCCGCCGGGACAAGGTGCGCCAGCTCGTGTCCCACGTCGCGCGCCTGGCGCGCGACGGCGCGGCCGTCGACGTCGGCCGCGCCGCGTTCACGGCTTCCCTGAACCTGCTCTCCAGCACCATCTTCTCCGCCGACCTCGCGGATTTCGGCGACGCCCGAGCTGAGTCGTCGGTGGGGGACTTAAGGGACTTGATCTCGGAGTTCACCATCGTCGTCGGGGTGCCGAACGTGTCGGACTTCTTCCCGGCCGTCGCGCCGCTCGACCCGCAGCGGCTGCGGAGGCGGGTGGCGAGGGTGTTCGAGCGGCTGCAGGCCGTGTTCGACGGGCACATCGAACGGCGCCTGCGGGACCGCGCTGCCGGGGAGCCGCCCAAGAACGATTTCCTGGACGCTTTGCTCGACTACCGCAGCCCGGAGGATGGCCGGGGTTTTGATCGGCCAACGCTACAGTTTCTGTTTACGGATTTGTTTAGCGCGGGAAGTGATACAAGCGCAGTAACTGTAGAATGGGCAATGGCTCAGCTGCTACAGAACCCACCAGCAATGGCGAAAGCTCGTGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCGACATTAGCCAGCTCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTCCGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGGTGCCCAAGGGCACCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGCTGGCTGTTCGCATGGTGTACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAGAGTTGGCTACGCCACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATATGCTACCTTGCTACATACAATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAATAAAATC                                                                                                                                   ]
[+] EMBL C72289               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCGACATTAGCCAGCTCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTCCGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGGTGCCCAAGGGCA CCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGG                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BE230674             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCTCCGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGGTGCCCAAGGGCACCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGCTGGCTGTTCGCATGGTGTACCTGATGCTCGCGTNGTTGCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGGTCGAGAAGAACGGGGTGG                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI813139             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGTTGGT GCTACAC GTGCCCAAGGCCACCCTGGTTCTGGTGAATGTTT GGCGATT GTCGGGACA CAAGGTGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGT GCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCC CTGGCTGTTCGCATGGTGCACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAGAGTTGGCTACGCCACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATATGCTACATTGCTACATAC ATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAATAAAATCATATACTAGTAC ATTCTGTTGTTTATGTCTGAAAGAGAGATC AATAGGGGTGCCTGTACGGTAGTACTAAATGCCCGCAGCTATCTAACTGAGAAAGTCTTGAGTTAAAAAAAAAA             ]
[+] EMBL CB096462             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGCTGGCTGTTCGCATGGTGCACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAGAGTTGGCTACGCCACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATATGCTACATTGCTACATACAATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAATAAAATCATATACTAGTACAATTCTGTTGTTTATGTCTGAAAGAGAGATCAAATAGGGGTGCCTGTACGGTAGTACTAAATGCCAGCAGCTATCTAACTGAGAAAGTCTTGAGTTAGTCGTTCTTCCAGTGGCTTGAT]


>consensus_11770#0 CGTGCGTTATTCTCCTTCTCTCCTCCCTGTACCTCCTCCGTCTCTTCGTCGACGCCCGCC GCAACCTGCCGCCGGGTCCCCGCCCGCAGCCGCTCATCGGCAACATCCTCGACCTCGGCT CCCAGCCGCACCGCTCCCTCGCGCGCCTCGCGGGGCGCTATGGCCCGCTCATGACGCTCC GCCTCGGCACCGTCACCACCGTCGTCGCCTCCTCCCCGGGCGCCGCCCGCGACATCCTCC AGCGCCACGACGCCGCCTTCTCCGCGCGCTCCGTGCCGGACGCCGCCCGCGCGTGCGGGC ACGACGGCTTCTCCATGGGCATGCTCCCGCCCAGCAGCGCCCTGTGGCGCGCGCTCCGCA GGGTGTGCGCCGCGGAGCTCTTCGCGCCGCGCAGCCTCGACGCGCACCAGCGCCTCCGCC GGGACAAGGTGCGCCAGCTCGTGTCCCACGTCGCGCGCCTGGCGCGCGACGGCGCGGCCG TCGACGTCGGCCGCGCCGCGTTCACGGCTTCCCTGAACCTGCTCTCCAGCACCATCTTCT CCGCCGACCTCGCGGATTTCGGCGACGCCCGAGCTGAGTCGTCGGTGGGGGACTTAAGGG ACTTGATCTCGGAGTTCACCATCGTCGTCGGGGTGCCGAACGTGTCGGACTTCTTCCCGG CCGTCGCGCCGCTCGACCCGCAGCGGCTGCGGAGGCGGGTGGCGAGGGTGTTCGAGCGGC TGCAGGCCGTGTTCGACGGGCACATCGAACGGCGCCTGCGGGACCGCGCTGCCGGGGAGC CGCCCAAGAACGATTTCCTGGACGCTTTGCTCGACTACCGCAGCCCGGAGGATGGCCGGG GTTTTGATCGGCCAACGCTACAGTTTCTGTTTACGGATTTGTTTAGCGCGGGAAGTGATA CAAGCGCAGTAACTGTAGAATGGGCAATGGCTCAGCTGCTACAGAACCCACCAGCAATGG CGAAAGCTCGTGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCG ACATTAGCCAGCTCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTC CGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGG TGCCCAAGGGCACCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGT GGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTG GCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGC TGGCTGTTCGCATGGTGTACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGC TTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAG AGTTGGCTACGCCACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATA TGCTACATTGCTACATACAATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAATAA AATCATATACTAGTACATTCTGTTGTTTATGTCTGAAAGAGAGATCAATAGGGGTGCCTG TACGGTAGTACTAAATGCCCGCAGCTATCTAACTGAGAAAGTCTTGAGTTAAAAAAAAAA CCAGTGGCTTGAT



consensusID : consensus_11770#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence
                              [CCGACATCGACAGCCTCGAGTACCTTCAGGCCGTCGTGAAAGAGACTTTCCGGCTCCATCCTCCCGCGCCGTTGCTGCTCTCTCACCGAGCCGAGACGGACACAGAGATCGGAGGCTACACGGTGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGTGGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTGGTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGCTGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTATTGCTACACCAATTTGACTATGTATAAAAACCGTACACAAAAATTACCGGCCGATCAACACTTGTTTCTGATGTTCACTGACCGAACCACCTGAAATCAGTAAGGTCGGAAATGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAATAATATGGGCATCTTTGCAAAAAAGATGACA]

[+] EMBL AK062535             [CCGACATCGACAGCCTCGAGTACCTTCAGGCCGTCGTGAAAGAGACTTTCCGGCTCCATCCTCCCGCGCCGTTGCTGCTCTCTCACCGAGCCGAGACGGACACAGAGATCGGAGGCTACACGGTGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGTGGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTGGTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGCTGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTATTGCTACACCAATTTGACTATGTATAAAAACCGTACACAAAAATTACCGGCCGATCAACACTTGTTTCTGATGTTCACTGACCGAACCACCTGAAATCAGTAAGGTCGGAAATGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAATAATATGGGCATCTTTGCAAAAAAGATGACA]


>consensus_11770#1 CCGACATCGACAGCCTCGAGTACCTTCAGGCCGTCGTGAAAGAGACTTTCCGGCTCCATC CTCCCGCGCCGTTGCTGCTCTCTCACCGAGCCGAGACGGACACAGAGATCGGAGGCTACA CGGTGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGG TGTGGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCC GTGGTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGC CGCTGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGA GGCTTCTGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAA TGACGTTGGCTACGCCCCTCCAAGCTATTGCTACACCAATTTGACTATGTATAAAAACCG TACACAAAAATTACCGGCCGATCAACACTTGTTTCTGATGTTCACTGACCGAACCACCTG AAATCAGTAAGGTCGGAAATGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAATAATATG GGCATCTTTGCAAAAAAGATGACA



consensusID : consensus_11770#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence
                              [TGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCGACATTAGCCAATCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTCCGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGTGCCCAAGGGCACCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGCTGGCTGTTCGCATGGTGTACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAGAGNTTGTACGCCACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATATGCTACCTTGCTACATACAATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAATAAAATCATATACTAGTACAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU093938             [TGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCGACATTAGCCAATCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTCCGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGTGCCCAAGGGCACCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGCTGGCTGTTCGCATGGTGTACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAGAGNTTGTACGCCACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATATGCTACCTTGCTACATACAATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAATAAAATCATATACTAGTACAAAAAAAAAAAAAAAAAAAA]


>consensus_11770#2 TGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCGACATTAGCCA ATCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTCCGGCGCCATTT CTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGTGCCCAAGGGCA CCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGTGGTCTGACCCTG ACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCG AACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGCTGGCTGTTCGCA TGGTGTACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGG TCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAGAGNTTGTACGCC ACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATATGCTACCTTGCTA CATACAATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAATAAAATCATATACTAG TACAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11770#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence
                              [AGAGGACGAGACAACGGGGCGACACAGAGATCGGAGGCTACACGGTGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGTGGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTGGTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGCTGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGCTTCCGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTATTGCTACACCAATTTGACTATGTATAAAAACCGTACACAAAAATTACCGGCCGATCAACACTTGTTTTTGATGTTCACTGACCGAACCACCTGAGATCAGTAAGGTCGGAAATGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAATAATATGGGCGTCTTTGCAAAAAAGATGACAAATTTCAGGTAAAAAAAAAAA]

[-] EMBL CA759119             [AGAGGACGAGACAACGGGGCGACACAGAGATCGGAGGCTACACGGTGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGTGGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTGGTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGCTGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGCTTCCGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTATTGCTACACCAATTTGACTATGTATAAAAACCGTACACAAAAATTACCGGCCGATCAACACTTGTTTTTGATGTTCACTGACCGAACCACCTGAGATCAGTAAGGTCGGAAATGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAATAATATGGGCGTCTTTGCAAAAAAGATGACAAATTTCAGGTAAAAAAAAAAA]


>consensus_11770#3 AGAGGACGAGACAACGGGGCGACACAGAGATCGGAGGCTACACGGTGCCCAAGGGCGCGA CCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGTGGTTTGAGCCTGACA AGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTGGTCGCGACTTCGAGC TGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGCTGGCTGTTCGCATGG TGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGCTTCCGCCGGAGGTTG AGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCC TCCAAGCTATTGCTACACCAATTTGACTATGTATAAAAACCGTACACAAAAATTACCGGC CGATCAACACTTGTTTTTGATGTTCACTGACCGAACCACCTGAGATCAGTAAGGTCGGAA ATGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAATAATATGGGCGTCTTTGCAAAAAAG ATGACAAATTTCAGGTAAAAAAAAAAA



consensusID : consensus_11770#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence
                              [ATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTACTTGCTACCCCCATTTGACTATGTATAAAAACCGTACACCAAAAATTACCGGCCGATCACACTTGTTTCTGATGTTCACTGACCGAACCACCTGAAATCAGTAAGGTCGGAAATGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BM038921             [ATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTACTTGCTACCCCCATTTGACTATGTATAAAAACCGTACACCAAAAATTACCGGCCGATCACACTTGTTTCTGATGTTCACTGACCGAACCACCTGAAATCAGTAAGGTCGGAAATGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAAAAAAAAAAAAAAAAAAA]


>consensus_11770#4 ATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTACTTGCTAC CCCCATTTGACTATGTATAAAAACCGTACACCAAAAATTACCGGCCGATCACACTTGTTT CTGATGTTCACTGACCGAACCACCTGAAATCAGTAAGGTCGGAAATGGTAGAAAACCCAG TTAAAAACAGTGGTGAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      CGTGCGTTATTCTCCTTCTCTCCTCCCTGTACCTCCTCCGTCTCTTCGTCGACGCCCGCC 60
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      GCAACCTGCCGCCGGGTCCCCGCCCGCAGCCGCTCATCGGCAACATCCTCGACCTCGGCT 120
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      CCCAGCCGCACCGCTCCCTCGCGCGCCTCGCGGGGCGCTATGGCCCGCTCATGACGCTCC 180
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      GCCTCGGCACCGTCACCACCGTCGTCGCCTCCTCCCCGGGCGCCGCCCGCGACATCCTCC 240
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      AGCGCCACGACGCCGCCTTCTCCGCGCGCTCCGTGCCGGACGCCGCCCGCGCGTGCGGGC 300
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      ACGACGGCTTCTCCATGGGCATGCTCCCGCCCAGCAGCGCCCTGTGGCGCGCGCTCCGCA 360
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      GGGTGTGCGCCGCGGAGCTCTTCGCGCCGCGCAGCCTCGACGCGCACCAGCGCCTCCGCC 420
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      GGGACAAGGTGCGCCAGCTCGTGTCCCACGTCGCGCGCCTGGCGCGCGACGGCGCGGCCG 480
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      TCGACGTCGGCCGCGCCGCGTTCACGGCTTCCCTGAACCTGCTCTCCAGCACCATCTTCT 540
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      CCGCCGACCTCGCGGATTTCGGCGACGCCCGAGCTGAGTCGTCGGTGGGGGACTTAAGGG 600
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      ACTTGATCTCGGAGTTCACCATCGTCGTCGGGGTGCCGAACGTGTCGGACTTCTTCCCGG 660
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      CCGTCGCGCCGCTCGACCCGCAGCGGCTGCGGAGGCGGGTGGCGAGGGTGTTCGAGCGGC 720
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      TGCAGGCCGTGTTCGACGGGCACATCGAACGGCGCCTGCGGGACCGCGCTGCCGGGGAGC 780
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      CGCCCAAGAACGATTTCCTGGACGCTTTGCTCGACTACCGCAGCCCGGAGGATGGCCGGG 840
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      GTTTTGATCGGCCAACGCTACAGTTTCTGTTTACGGATTTGTTTAGCGCGGGAAGTGATA 900
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ------------------------------------------------------------
consensus_11770#0      CAAGCGCAGTAACTGTAGAATGGGCAATGGCTCAGCTGCTACAGAACCCACCAGCAATGG 960
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ---------------------------------------------------------CCG 3
consensus_11770#0      CGAAAGCTCGTGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCG 1020
consensus_11770#2      ----------TGAGGAGCTTGCTCGAGTGATTGGCTCCAAACAAGAAATTGAGGAATCCG 50
                                                                                   

consensus_11770#3      ------------------------------------------------------------
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      ACATCGACAGCCTCGAGTACCTTCAGGCCGTCGTGAAAGAGACTTTCCGGCTCCATCCTC 63
consensus_11770#0      ACATTAGCCAGCTCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTC 1080
consensus_11770#2      ACATTAGCCAA-TCAAGTACCTCGAAGCCGTCGTGAAGGAGACATTACGGCTTCATCCTC 109
                                                                                   

consensus_11770#3      ---------------AGAGGACGAGACAACGGGGCGACACAGAGATCGGAGGCTACACGG 45
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      CCGCGCCGTTGCTGCTCTCTCACCGAGCCGAGACGGACACAGAGATCGGAGGCTACACGG 123
consensus_11770#0      CGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACGG 1140
consensus_11770#2      CGGCGCCATTTCTGCTTCCTCACCAAGCCGAAACGACCACACAGGTTGGTGGCTACACG- 168
                                                                                   

consensus_11770#3      TGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGT 105
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      TGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGT 183
consensus_11770#0      TGCCCAAGGGCACCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGT 1200
consensus_11770#2      TGCCCAAGGGCACCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGGTGT 228
                                                                                   

consensus_11770#3      GGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTG 165
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      GGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTG 243
consensus_11770#0      GGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTG 1260
consensus_11770#2      GGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTG 288
                                                                                   

consensus_11770#3      GTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGC 225
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      GTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGC 303
consensus_11770#0      GCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGC 1320
consensus_11770#2      GCCGTGACTTCGAACTGATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGC 348
                                                                                   

consensus_11770#3      TGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGC 285
consensus_11770#4      ------------------------------------------------------------
consensus_11770#1      TGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGC 363
consensus_11770#0      TGGCTGTTCGCATGGTGTACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGC 1380
consensus_11770#2      TGGCTGTTCGCATGGTGTACCTGATGCTCGCGTCGTTGCTGCACCGGTTTGAGTGGAGGC 408
                                                                                   

consensus_11770#3      TTCCGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGA 345
consensus_11770#4      --------------------------------ATGGAGGAGAAATTTGGGATCGTAATGA 28
consensus_11770#1      TTCTGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGA 423
consensus_11770#0      TTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAG 1440
consensus_11770#2      TTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATACTAG 468
                                                       **** ****** ** *****  ** *  

consensus_11770#3      CGTTGGCTACGCCCCTCCAAGCTA-TTGCTACACCAATTTGACTATGT-ATAAAAACCGT 403
consensus_11770#4      CGTTGGCTACGCCCCTCCAAGCTACTTGCTACCCCCATTTGACTATGT-ATAAAAACCGT 87
consensus_11770#1      CGTTGGCTACGCCCCTCCAAGCTA-TTGCTACACCAATTTGACTATGT-ATAAAAACCGT 481
consensus_11770#0      AGTTGGCTACGCCACTCCGGGCTG-TTGCTATACCAGTTTAATAAGCTGATCATCACCAT 1499
consensus_11770#2      AGNTTG-TACGCCACTCCGGGCTG-TTGCTATACCAGTTTAATAAGCTGATCATCACCAT 526
                        * * * ****** ****  ***  ******  **  *** *  *  * ** *  *** *

consensus_11770#3      ACAC-AAAAATTACCGGCCGATCAACACTTGTTTTTGATGTTCACTGACCGAACCACCTG 462
consensus_11770#4      ACACCAAAAATTACCGGCCGATCA-CACTTGTTTCTGATGTTCACTGACCGAACCACCTG 146
consensus_11770#1      ACAC-AAAAATTACCGGCCGATCAACACTTGTTTCTGATGTTCACTGACCGAACCACCTG 540
consensus_11770#0      ATGC--TACATTGCTA-CATACAATCCGTTATCTTTAGGA---ATGGAACACTTCACT-- 1551
consensus_11770#2      ATGC--TACCTTGCTA-CATACAATCCGTTATCTTTAGGA---ATGGAACACTTCACT-- 578
                       *  *   *  ** *   *  *  * *  ** * * *       *  ** *    ***   

consensus_11770#3      AGATCAGTAAGGTCGGAAA-TGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAATAATAT 521
consensus_11770#4      AAATCAGTAAGGTCGGAAA-TGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAAAAAAAA 205
consensus_11770#1      AAATCAGTAAGGTCGGAAA-TGGTAGAAAACCCAGTTAAAAACAGTGGTGAAAATAATAT 599
consensus_11770#0      -GGTAAATAAAATCATATACTAGTACATTCTGTTGTTTATGTCTGAAAGAGAGATCAATA 1610
consensus_11770#2      -GGTAAATAAAATCATATACTAGTACAAA--------AAAAAAAAAAAAAAAAA------ 623
                          * * ***  **  * * * *** *           *            * *      

consensus_11770#3      GGGCGTCTTTGCAAAAAAGATGACAAATTTCAGGTAAAAAAAAAAA-------------- 567
consensus_11770#4      AAA---------AAAAAAAA---------------------------------------- 216
consensus_11770#1      GGGCATCTTTGCAAAAAAGATGACA----------------------------------- 624
consensus_11770#0      GGGGTGCCTGTACGGTAGTACTAAATGCCCGCAGCTATCTAACTGAGAAAGTCTTGAGTT 1670
consensus_11770#2      ------------------------------------------------------------
                                                                                   

consensus_11770#3      -----------------------
consensus_11770#4      -----------------------
consensus_11770#1      -----------------------
consensus_11770#0      AAAAAAAAAACCAGTGGCTTGAT 1693
consensus_11770#2      -----------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)