These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 627 fasta sequence [TGNGNACGCGTGGGTNGG-GTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAN] [+] EMBL OS0680A [TGNGNACGCGTGGGTNGGNGTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTAT ] [+] EMBL OSR15202B [ aGTTGG GTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGNCGNCGNCGNCGGCGNCA NGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGNATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGNGACAACAGTTGAGATTGACGATGAGACA ] [+] EMBL AK060459 [ AGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTG ] [+] EMBL AK099337 [ GCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCA ] [+] EMBL CF300945 [ TAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACA ] [+] EMBL CA756855 [ AGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCACTAANNNANAAAAAAATAANNAAAAAAANAN] [+] EMBL AU093176 [ GAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCNTCTACGTCAAGNTCAGGCCCGACCGNGAG TCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGNAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF300946 [ TCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTTTGATGGATTAAAGTTTTAGCATATGATACAATTGTGTAACAATTTTTGATCGAGGTGCTAGTTTTTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_11781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [ATNTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTNTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAAAAAAAAAAAAA] [+] EMBL AU173165 [ATNTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTNTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11781#0 TGNGNACGCGTGGGTNGGGTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGA 60 consensus_11781#1 ------------------------------------------------------------ consensus_11781#0 GGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGA 120 consensus_11781#1 ------------------------------------------------------------ consensus_11781#0 GCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGA 180 consensus_11781#1 -------------------------------------ATNTACGTCAAGCTCAGGTCCGA 23 ** ******************** consensus_11781#0 CCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGA 240 consensus_11781#1 CCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTNTTGGAGA 83 **************************************************** ******* consensus_11781#0 TGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCG 300 consensus_11781#1 TGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCG 143 ************************************************************ consensus_11781#0 CACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTC 360 consensus_11781#1 CACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTC 203 ************************************************************ consensus_11781#0 TCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGT 420 consensus_11781#1 TCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGT 263 ************************************************************ consensus_11781#0 AATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGG 480 consensus_11781#1 AATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGG 323 ***************************************************** ****** consensus_11781#0 ATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCT 540 consensus_11781#1 ATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNTGATCGAGGTGCTAGTTTCT 383 *************************************** ******************** consensus_11781#0 ACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCACTAA 600 consensus_11781#1 ACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAAAAAAAAAAAAA------------ 431 ************************************* ** ** consensus_11781#0 AAAAAAAAAAAAAAAAAAAAAAAAAAN 627 consensus_11781#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||