These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1653 fasta sequence [GCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTCGCCGTCGCCGCCATCCTCCTCTTCCTCGGCGTCACCGGCCTCATGACCACCCTCTACCGCCTCCTCCCGCTCCCCGTCGTGCGCGGCGTCCAGCTCTCGCAGGGCCTCTCCTTCGCCTTCACCGCCGTCAAGTACATCCGCTACGTGCAGGACTTCTCCCGTTCCTCCTCTGCTTCCACCTCCGTGCCGCGCCCCCTCCTCGGCCTCGACGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGACGTCAACAGGGACGGCACGAGCCGTCGCCGTCGCTCCTGCAGCCGCGTCCCGGCGGCGCTAATCGTGTTCGCGCTCGGCTTGGTGCTCTGCTTCGTTCGTGATCCGTCCATCCTGCAGGATCTCCGCTTTGGGCCGGCGCCGTTGGGGCTGGTCAAGATAACCTGGGACGATTTCAAGATCGGGTTCTGGGAGGGCGCCGTGCCGCAGCTCCCGCTGTCCGTGCTGAACTCGGTGATCGCCGTGTGCAAGCTGTCGTCGGACCTGTTCCCGGAACGGGCCGAGCTCTCGCCGGCGCGGGTGTCGGTGAGCGTGGGGCTCATGAATTTCGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGCGGGCTGGCGGGGCAGTACCGGTTCGGCGGCCGGACCGGCGCGTCCGTGGTGTTCCTGGCCATCGGCAAGCTGGCGCTCGGGCTGGTGTTCGGCAACTCGTTCGTGACGATCCTGGGGCAGTTCCCGATCGGGATACTGGGCGTCATGCTGCTCTTCTCCGGGATCGAGCTCGCCATGGCGTCGCGCGACATGGGGAGCAAGCAGGAGTCGTTCGTCATGCTGGTCTGCGCCGGCGTGTCGCTCACAGGCTCGAGCGCCGCGCTGGGCTTCATCTCCGGAATCGTGCTGTACCTGTTGCTACGCCTGAGGGATTTGGAGTGGGATATCAGAGGACTGCTCGGTCGCTGGGCCGCGGGACGGCGGCAATCGACCAACGAGGCCAATGAAGATGGGGCTGGAGATGCTTGATCGAAATCTTGAGAACATCTGTTGATTTGAGATTTTGAGTGTGGTGTGAATTGTTCGAGCGAATATATATAGTATCAACATGCATAGCGGATAGCCACGAGTGATTGAATTTCTGAATGGAGTAACTCCACATAATCGCCCAAACTTTCAAACCAACTACTCCCTCTGTCCTTAAACATCTTAAATGTTTGACGCCGTTGGCTTTTTTA] [+] EMBL AK100928 [GCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTCGCCGTCGCCGCCATCCTCCTCTTCCTCGGCGTCACCGGCCTCATGACCACCCTCTACCGCCTCCTCCCGCTCCCCGTCGTGCGCGGCGTCCAGCTCTCGCAGGGCCTCTCCTTCGCCTTCACCGCCGTCAAGTACATCCGCTACGTGCAGGACTTCTCCCGTTCCTCCTCTGCTTCCACCTCCGTGCCGCGCCCCCTCCTCGGCCTCGACGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGACGTCAACAGGGACGGCACGAGCCGTCGCCGTCGCTCCTGCAGCCGCGTCCCGGCGGCGCTAATCGTGTTCGCGCTCGGCTTGGTGCTCTGCTTCGTTCGTGATCCGTCCATCCTGCAGGATCTCCGCTTTGGGCCGGCGCCGTTGGGGCTGGTCAAGATAACCTGGGACGATTTCAAGATCGGGTTCTGGGAGGGCGCCGTGCCGCAGCTCCCGCTGTCCGTGCTGAACTCGGTGATCGCCGTGTGCAAGCTGTCGTCGGACCTGTTCCCGGAACGGGCCGAGCTCTCGCCGGCGCGGGTGTCGGTGAGCGTGGGGCTCATGAATTTCGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGCGGGCTGGCGGGGCAGTACCGGTTCGGCGGCCGGACCGGCGCGTCCGTGGTGTTCCTGGCCATCGGCAAGCTGGCGCTCGGGCTGGTGTTCGGCAACTCGTTCGTGACGATCCTGGGGCAGTTCCCGATCGGGATACTGGGCGTCATGCTGCTCTTCTCCGGGATCGAGCTCGCCATGGCGTCGCGCGACATGGGGAGCAAGCAGGAGTCGTTCGTCATGCTGGTCTGCGCCGGCGTGTCGCTCACAGGCTCGAGCGCCGCGCTGGGCTTCATCTCCGGAATCGTGCTGTACCTGTTGCTACGCCTGAGGGATTTGGAGTGGGATATCAGAGGACTGCTCGGTCGCTGGGCCGCGGGACGGCGGCAATCGACCAACGAGGCCAATGAAGATGGGGCTGGAGATGCTTGATCGAAATCTTGAGAACATCTGTTGATTTGAGATTTTGAGTGTGGTGTGAATTGTTCGAGCGAATATATATAGTATCAACATGCATAGCGGATAGCCACGAGTGATTGAATTTCTGAATGGAGTAACTCCACATAATCGCCCAAACTTTCAAACCAACTACTCCCTCTGTCCTTAAACATCTTAAATGTTTGACGCCGTTGGCTTTTTTA] consensusID : consensus_11797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1501 fasta sequence [AGGATCCTATAAATCCTGCGCGGCGAGCAGAGAAGAGAAGAGACGAGCAGCGGTGATGGCCGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGATGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGCGGTGGAAAACCTGAGGTTCCGGTCGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCGGGACGTACATCCCCATCGTGCTGTCGCTGGCGCTGTCCCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCATCTACAACGCCATCACCGGCCTCCTCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGGCATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTACCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGCCATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGGCAAGGGCAAGTCCCTCGGGCGGCGCCCCTGGGTGGGCCTCGACGGCCTCGTGCTCGCCATCGCGGCGGTCTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGCAGGAGCAGCGTCAGCAGCAGCAGCAGCAGCAACAGTGGTGGCGTCGTCGGTTGGGTTCCGTTCCTTCGGCTGTGGTGGTGTTCGTGGTGGGCGTTGCGTTCGCGGTGGCGCGTCACCCAGCGGCGGTGAGGGAGCTGCGCGCTGGGCCGTCGCGGATGCGGGTGGTGCACATCTCTCGGGAGGCGTGGAAGCAAGGGTTCATCAAGGGCGCGCTGCCGCAGATCCCGCTGTCGGTGCTCAACTCGGTGGTGGCGGTGTGCAAGCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAGTCGCCGACGTCGGTGTCGGTGACGATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCTGGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGTCCAGTTCCCCGTCGGTCTTCTCGGCGCGCTGCTGCTGTTCGCCGGAGTGGAGCTCGCGGCGGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGTGTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCTTCTCTACCTCAGGGCCTGCGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAGCCAAACATTCATAAATAATCACTCAATACAGCTCGTTCCG] [+] EMBL CB647162 [AGGATCCTATAAATCCTGCGCGGCGAGCAGAGAAGAGAAGAGACGAGCAGCGGTGATGGCCGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGATGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGCGGTGGAAAACCTGAGGTTCCGGTCGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCGGGACGTACATCCCCATCGTGCTGTCGCTGGCGCTGTCCCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCATCTACAACGCCATCACCGGCCTCCTCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGGCATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTACCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGCCATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGGCAAGGGCAAGTCCCTCGGGCGGCGCACCTGGGTGGGCCTCGACGGCCTCGTGCTCGCCATCGCGGCGGTCTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGC ] [+] EMBL AK106547 [ TGATGGCCGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGATGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGCGGTGGAAAACCTGAGGTTCCGGTCGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCGGGACGTACATCCCCATCGTGCTGTCGCTGGCGCTGTCCCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCATCTACAACGCCATCACCGGCCTCCTCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGGCATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTACCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGCCATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGGCAAGGGCAAGTCCCTCGGGCGGCGCCCCTGGGTGGGCTTCGACGGCCTCGTGCTCGCCATCGCGGCGGTCTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGCAGGAGCAGCGTCAGCAGCAGCAGCAGCAGCAACAGTGGTGGCGTCGTCGGTTGGGTTCCGTTCCTTCGGCTGTGGTGGTGTTCGTGGTGGGCGTTGCGTTCGCGGTGGCGCGTCACCCAGCGGCGGTGAGGGAGCTGCGCGCTGGGCCGTCGCGGATGCGGGTGGTGCACATCTCTCGGGAGGCGTGGAAGCAAGGGTTCATCAAGGGCGCGCTGCCGCAGATCCCGCTGTCGGTGCTCAACTCGGTGGTGGCGGTGTGCAAGCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAGTCGCCGACGTCGGTGTCGGTGACGATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCTGGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGTCCAGTTCCCCGTCGGTCTTCTCGGCGCGCTGCTGCTGTTCGCCGGAGTGGAGCTCGCGGCGGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGTGTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCTTCTCTACCTCAGGGCCTGCGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAGCCAAACATTCATAAATAATCACTCAATACAGCTCGTTCCG] [+] EMBL AK103792 [ TGGCCGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGATGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGCGGTGGAAAACCTGAGGTTCCGGTCGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCGGGACGTACATCCCCATCGTGCTGTCGCTGGCGCTGTCCCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCATCTACAACGCCATCACCGGCCTCCTCTACGTCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGGCATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTACCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGCCATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGGCAAGGGCAAGTCCCTCGGGCGGCGCCCCTGGGTGGGCCTCGACGGCCTCGTGCTCGCCATCGCGGCGGTCTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGCAGGAGCAGCGTCAGCAGCAGCAGCAGCAGCAACAGTGGTGGCGTCGTCGGTTGGGTTCCGTTCCTTCGGCTGTGGTGGTGTTCGTGGTGGGCGTTGCGTTCGCGGTGGCGCGTCACCCAGCGGCGGTGAGGGAGCTGCGCGCTGGGCCGTCGCGGATGCGGGTGGTGCACATCTCTCGGGAGGCGTGGAAGCAAGGGTTCATCAAGGGCGCGCTGCCGCAGATCCCGCTGTCGGTGCTCAACTCGGTGGTGGCGGTGCGCAAGCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAGTCGCCGACGTCGGTGTCGGTGACGATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCTGGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGTCCAGTTCCCCGTCGGTCTTCTCGGCGCGCTGCTGCTGTTCGCCGGAGTGGAGCTCGCGGCGGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGTGTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCTTCTCTACCTCAGGGCCTGCGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAGCCAAACATTCATAAATAATCACTCAATACAGCTCGTTCCG] [-] EMBL CB647163 [ TGTCGGTGCTCAACTCGGTGGTGGCGGTGTGCAAGCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAGTCGCCGACGTCGGTGTCGGTGACGATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCTGGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGTCCAGTTCCCCGTCGGTCTTTTCGGCGCGCTGCTGCTGTTCTCCGGAGTGGAGCTCGCGGCGGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGTGTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCTTCTTTACCTCAGGGCCGGGGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTAAAAGAACGCCAGCCAAACATT ] consensusID : consensus_11797#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence [CGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGACGTCAACAGGGACGGCACGGCCCGGCGGCGGCGAACGGGAGCGGAAGCAAAACTCTTGTGTTCATGTGTGTTCTTTTGTTCATCTTTTGTGTTCATGTTGTGTTCTTGAAGTGAAAGTGAAATTGCTTGATGAGTAATGGATTTGTGCGAATTTAATTCCAAAAAAAAAAAAAAAAAAA] [+] EMBL AK120646 [CGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGACGTCAACAGGGACGGCACGGCCCGGCGGCGGCGAACGGGAGCGGAAGCAAAACTCTTGTGTTCATGTGTGTTCTTTTGTTCATCTTTTGTGTTCATGTTGTGTTCTTGAAGTGAAAGTGAAATTGCTTGATGAGTAATGGATTTGTGCG ] [+] EMBL AU094161 [ cgcnAGCGGAAGCAAAACTCTTGTNTTCATGTGTGTTCTTTTGTTCATCTTTTGTGTTCATGTTGTGTTCTTGAAGTGAAAGTNAAATTNCTTGATGAGTAATGGATTTNTGCGAATTTAATTCCAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11797#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [GCCGCTGTGGTGGTGGTGTGGCATCGGTCGGCCATGGAACCACCATCGACCTATCTTCCTCCGTCGCCGGCCATAGGCGACAGATCAAGGGTTCATCACGATGATGATGATGTAGATACACGAGAGGAAAGCAAGGGACCTGAGAATGTTCCTGGACAGCATACGGAACGAGCTGTATTGAGTGATTATTTATGAATGTTTGGCTGGCGTTTTTTGAGATGATAGTGAAATGGAATTGGAATTACAAATCCGTTTGAGATGAAAAAAAAAGCGG] [+] EMBL AU225334 [GCCGCTGTGGTGGTGGTGTGGCATCGGTCGGCCATGGAACCACCATCGACCTATCTTCCTCCGTCGCCGGCCATAGGCGACAGATCAAGGGTTCATCACGATGATGATGATGTAGATACACGAGAGGAAAGCAAGGGACCTGAGAATGTTCCTGGACAGCATACGGAACGAGCTGTATTGAGTGATTATTTATGAATGTTTGGCTGGCGTTTTTTGAGATGATAGTGAAATGGAATTGGAATTACAAATCCGTTTGAGATGAAAAAAAAAGCGG] consensusID : consensus_11797#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [GCCGCTGATTAAAAGCCCAATCAAGCAATCATCCCTTTCAAATACAAGAACTACACCGACCAATAATCCCAGAAAAAGAAAAGGAATAAAATTCGCACAAATCCATTACTCATCAAGCAATTTCACTTTCACTTCAAGAACACAACATGAACACAAAAGATGAACAAAAGAACACACATGAACACAAGAGTTTTGCTTCCGCTCCCGTTCGCCGCCGCCGGGCCGTCGCCTTCCCTCCACCACCGCCCGCCGCCCCCCGAGCGG] [+] EMBL AU225155 [GCCGCTGATTAAAAGCCCAATCAAGCAATCATCCCTTTCAAATACAAGAACTACACCGACCAATAATCCCAGAAAAAGAAAAGGAATAAAATTCGCACAAATCCATTACTCATCAAGCAATTTCACTTTCACTTCAAGAACACAACATGAACACAAAAGATGAACAAAAGAACACACATGAACACAAGAGTTTTGCTTCCGCTCCCGTTCGCCGCCGCCGGGCCGTCGCCTTCCCTCCACCACCGCCCGCCGCCCCCCGAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11797#0 ------------------GCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAG 42 consensus_11797#2 --------------------------------------------------------CGAG 4 consensus_11797#1 AGGATCCTATAAATCCTGCGCGGCGAGCAGAGAAGAGAAGAGACGAGCAGCGGTGATGGC 60 consensus_11797#4 ---------------------------GCCGCTGATTAAAAGCCCAATCAAGCAATCATC 33 consensus_11797#3 -------------------------------------GCCGCTGTGGTGGTGGTGTGGCA 23 consensus_11797#0 TTTCCCACCCATGGCATCC--TCCGCCGGCGACCCGCTCCTCTCCGG-CGAGGCCGGCGA 99 consensus_11797#2 TTTCCCACCCATGGCATCC--TCCGCCGGCGACCCGCTCCTCTCCGG-CGAGGCCGGCGA 61 consensus_11797#1 CGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGA 120 consensus_11797#4 CCTTTCAAATACAAGAACT------ACACCGACCAATAATCCCAGAAAAAGAAAAGGAAT 87 consensus_11797#3 TCGGTCGGCCATGGAACCA------CCATCGACCTATCTTCCTCCGTCGCCGGCCATAGG 77 * ** consensus_11797#0 CGGCCGC-CGCAGGTTCGTCCCGTCCACCATAC----GGCTCAAGAC-----------GT 143 consensus_11797#2 CGGCCGC-CGCAGGTTCGTCCCGTCCACCATAC----GGCTCAAGAC-----------GT 105 consensus_11797#1 TGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGC----GGTGGAAAACCTGAGGTTCCGGT 176 consensus_11797#4 AAAATTCGCACAAATCCATT--ACTCATCAAGC----AATTTCACTT------------T 129 consensus_11797#3 CGACAGATCAAGGGTTCATCACGATGATGATGATGTAGATACACGAGAGGAAAGCAAGGG 137 consensus_11797#0 CGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGG-GCACCTACATCCCCATCGTG 202 consensus_11797#2 CGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGG-GCACCTACATCCCCATCGTG 164 consensus_11797#1 CGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCG-GGACGTACATCCCCATCGTG 235 consensus_11797#4 CACTTCAAGAACACAACATGAACACAAAAGATGAACAAAAGAACACACATGAACACAAGA 189 consensus_11797#3 ACCTGAGAATGTTCCTGGACAGCATACGGAACGAGCTGTATTGAGTGATTATTTATGAAT 197 * * ** * * * consensus_11797#0 CTGGCGCTGTCGCTCGC-GTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCT 261 consensus_11797#2 CTGGCGCTGTCGCTCGC-GTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCT 223 consensus_11797#1 CTGTCGCTGGCGCTGTC-CCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCAT 294 consensus_11797#4 GTTTTGCTTCCGCTCCC-GTT-CGCCGCCGCCGGGCCGTCGCCTTC-CCTCCACCACCGC 246 consensus_11797#3 GTTTGGCTGGCGTTTTTTGAGATGATAGTGAAATGGAATTGGAATTACAAAT-CCGTTTG 256 * *** ** * * * ** consensus_11797#0 CTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTC 321 consensus_11797#2 CTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTC 283 consensus_11797#1 CTACAACGCCATCACCGGCCTCCTCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTC 354 consensus_11797#4 CCGCCGCCCCCCGAGCGG------------------------------------------ 264 consensus_11797#3 AGATGAAAAAAAAAGCGG------------------------------------------ 274 * *** consensus_11797#0 CATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGG 381 consensus_11797#2 CATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGG 343 consensus_11797#1 CATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGG 414 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 CCTCGCCGTCGCCGCCATCCTCCTCTTCCTCGGCGTCACCGGCCTCATGACCACCCTCTA 441 consensus_11797#2 CCTTGTCCTCGCGCTCGCC-------------GCGCTACTG--TTCATAATC-CTCGCCA 387 consensus_11797#1 CATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTA 474 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 CCGCCTCCTCCCGCTCCCCGTCGTGCGCGGCGTCCAGCTCTCGCAGGGCCTCTCCTTCGC 501 consensus_11797#2 CCGGCTCCGGCGAC-----GACGAGGACGTCAAC-AGGGACGGCACGGCCCGGCGGCGGC 441 consensus_11797#1 CCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGC 534 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 CTTCACCGCCGTCAAGTACATCCGCTACGTGCAGGACTTCTCCCGTTCCTCCTCTGCTTC 561 consensus_11797#2 GAACGGGAGCGG-AAGCAAAACTCTTGTGTTCATGTGTGTTC----TTTTGTTCATCTTT 496 consensus_11797#1 CATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGG-----CAAGGGCAAGTCC 589 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 CACCTCCGTGCCGCGCCCCCTCCTCGGCCTCGACGGCCTTGTCCTCGCGCTCGCCGCGCT 621 consensus_11797#2 TGTGTTCATGTTGTG-----TTCTTGAAGT-GAAAGTGAAATT-----GCTTGATGAGTA 545 consensus_11797#1 C----TCGGGCGGCGCCCCTGGGTGGGCCTCGACGGCCTCGTGCTCGCCATCGCGGCGGT 645 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 ACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGA-------CGTCAACAGGG 674 consensus_11797#2 ATGGATT----TGTGCGAATTTAATTCCAAAAAAAAAAAAAA-------AAAAA------ 588 consensus_11797#1 CTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGCAGGAGCAGCGTCAGCAGCAGCA 705 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 ACGGCACGAGCCGTCGC--CGTCGCTCCTGCAGCCGCGTCCCGGCGGCGCTAATCGTGTT 732 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 GCAGCAGCAACAGTGGTGGCGTCGTCGGTTGGGTTCCGTTCCTTCGGCTGTGGTGGTGTT 765 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 CGCGCTCGGCTTGGTGCTCTGCTTCGTTCGTGATCCGTCCATCCTGCAGGATCTCCGCTT 792 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 CGTGGTGGGCGTTGCGTTCGCGGTGGCGCGTCACCCAGCGGCGGTGAGGGAGCTGCGCGC 825 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 TGGGCCGGCGCCGTTGGGGCTGGTCAAGATAACCTGGGACGATTTCAAGATCGGGTTCTG 852 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 TGGGCCGTCGCGGATGCGGGTGGTGCACATCTCTCGGGAGGCGTGGAAGCAAGGGTTCAT 885 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 GGAGGGCGCCGTGCCGCAGCTCCCGCTGTCCGTGCTGAACTCGGTGATCGCCGTGTGCAA 912 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 CAAGGGCGCGCTGCCGCAGATCCCGCTGTCGGTGCTCAACTCGGTGGTGGCGGTGTGCAA 945 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 GCTGTCGTCGGACCTGTTCCCGGAACGGGCCGAGCTCTCGCCGGCGCGGGTGTCGGTGAG 972 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 GCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAG---TCGCCGACGTCGGTGTCGGTGAC 1002 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 CGTGGGGCTCATGAATTTCGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGC 1032 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 GATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGC 1062 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 GGGCGGGCTGGCGGGGCAGTACCGGTTCGGCGGCCGGACCGGCGCGTCCGTGGTGTTCCT 1092 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 GGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCT 1122 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 GGCCATCGGCAAGCTGGCGCTCGGGCTGGTGTTCGGCAACTCGTTCGTGACGATCCTGGG 1152 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 GGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGT 1182 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 GCAGTTCCCGATCGGGATACTGGGCGTCATGCTGCTCTTCTCCGGGATCGAGCTCGCCAT 1212 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 CCAGTTCCCCGTCGGTCTTCTCGGCGCGCTGCTGCTGTTCGCCGGAGTGGAGCTCGCGGC 1242 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 GGCGTCGCGCGACATGGGGAGCAAGCAGGAGTCGTTCGTCATGCTGGTCTGCGCCGGCGT 1272 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 GGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGT 1302 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 GTCGCTCACAGGCTCGAGCGCCGCGCTGGGCTTCATCTCCGGAATCGTGCTGTACCTGTT 1332 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 GTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCT 1362 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 GCTACGCCTGAGGGATTTGGAGTGGGATATCAGAGGACTGCTCGGTCGCTGGGCCGCGGG 1392 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 TCTCTACCTCAGGGCCTGCGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTA 1422 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 ACGGCGGCAATCGACCAACGAGGCCAATGAAGATGG-GGCTGGAGATGCTTGATCGAAAT 1451 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 ATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAGCCAAACATTCATAAATAATCA 1482 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 CTTGAGAACATCTGTTGATTTGAGATTTTGAGTGTGGTGTGAATTGTTCGAGCGAATATA 1511 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 CTCAATACAGCTCGTTCCG----------------------------------------- 1501 consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 TATAGTATCAACATGCATAGCGGATAGCCACGAGTGATTGAATTTCTGAATGGAGTAACT 1571 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 ------------------------------------------------------------ consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 CCACATAATCGCCCAAACTTTCAAACCAACTACTCCCTCTGTCCTTAAACATCTTAAATG 1631 consensus_11797#2 ------------------------------------------------------------ consensus_11797#1 ------------------------------------------------------------ consensus_11797#4 ------------------------------------------------------------ consensus_11797#3 ------------------------------------------------------------ consensus_11797#0 TTTGACGCCGTTGGCTTTTTTA 1653 consensus_11797#2 ---------------------- consensus_11797#1 ---------------------- consensus_11797#4 ---------------------- consensus_11797#3 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||