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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2117 fasta sequence
[CATCCGCCGCGGCGCCGCCACACTGCCGTAGCCCTCACGCACGTGGAGGGCGACACATCGGCGCACACCGCCGGCTCTCCGCCTCGCACAACGGAGCGAGGGCGTGGTGTGCGTGCCCGCCGGCCGCCGCTAGCTCCCCACTTCACGCCCCTCTCTTTGCCTCGCCTTCTCTTCTTCCCACTCTTCTCGTGCTCTCGCCGGCTTTTCTCCTCCGTCGTCGTTGGCCCATCGATGGTAGTTCGTCCCCAATCAAGTGCCATTGTGGCAACGTCTATACAAAGCATCATCTCGACGGTCTGCGAGCTTGAGCTCGAGATGCGGTGTTTCCCCATCTCATGCGAATCATTTGGGCCTTGTGAATCTCAACTCCCGAAGTGTCCAGGGTGAATGAGTGTATCCGTCTCCATCGTCAGCCTGCTGATACTCAGACAATGCTGATCTACCATCCCTCCTTTCAAGTTTCGTAGTTCAGGTCAACATTCATGACTTCGACAAACAGTCTGCCACCTTCATCAGCTCAGCCACTGGGGCCATCACCATCTCCTACATCATGAGGATATGCACAATGTGCTTTGTACAGAGGGATCGTGATCTAGGTGTTTGCAAAGAGCATGCGTGAGGGCTATATACCATTAGAGGAGCTCTTACAGACAATGCACAGACAATATAGTATTTCAAGCATCAGGTAGGCTTTCAGTCATTTACGAATTAGCATTTTTCTTTGTGTGTTTGCTCTCAGTACCCACTTGGTTCTTCATGTAGATTCTAGACGATTTAGGTTTGGCACTAATAGAACTAGACTTTCAGTTAAATGGATGATTTATATGCAGGAAGATCCAATTTGCTTGATACCCTATTATCTGTGTACCATTTTCAGTACTTTTGTTGTACGACTGTTATACCTATCCTGACAATGTTATAGATCATTGGATCAAATGGACTAGATCCTTCTTTACACTTTTAATTCTCTTAGCTGGTAGATCATTGAATGGTTAATATGGTCAATTATAGGTTGTATGCTAACATGGTGTATATTTGTCTGCAGGATTTTTTTTCTTCCCTTTACCCATCATCATTCTCTGCGGTGAGGTATTGTTTTTTATTTCTATTTTACTCATCCAGGCCTTCTGCAATAACTATTTTGATGAAACAATTGTAGTTTCCACAATTATATTCAGCTCTTTGTCTTTTAAAACTGAATTACTAGCTGTGAGCTCAGAATAGCAAAGTATTTGTTGTCGAAAATAGAGATGATTTCCTACAGCCCACTAAGGAGTGATAGCAGGATAGATGTGGCTCTTATGTATTATGGTGATTCACCTTGAACTAAAAAAAATATTTGTCTAGACAATTAATGCCTCCTATTTGCATCAATGAATAGTCAGTTTAAATGCATTGGGTATATTCGCCCAGTTCATTGTATTGCCAGTTGTTTCTGAATGTTACTTATTTAGTTTTTCAAAATATGTAGAGTAAATGACACCATAGTGAAAATTTTCCAATTCAACCATATGCTCATCCATTTTCTTCCCTTAAACGTGGAAAACACTTTTACTGGCAGTTGCACTTCAAAGTTTTAGCGAGAAAAGTTATTTCAGTATCTCAACTTGGCCGTTCCTTTTCACCATATAGTTGATAGCTTGATATTATAGAGAGATAACAGAACTCGCCAAAAGCGTTATAATTTTGATTGAATGCAAGATAACTGTAGTATACTTCCCTATGGGATTGTAAAATTCATCATTGCTTAATCTGTCAACCTTCAAATCATTGTCATCGGCAAGCATAGACTAATCTTCTTTTGTTTTACTGTTATAGGACTACTAGGGAGGGAGTTTCTGCGGTAATATATGCAACACCAAGCATATCCGATATACTTCCCGTCAGTGCAGGAGAGTAGTTTAGAGGTTGCATAAGTGCATGTCATTGCTGGAGTGTACCAGTATAAAATGTGCTGAAATTATTTCGTAGCTAATAAAGTAAATTTACAACCTTTTGTTTATACGGGTTACTGGTAATTAGTAAGTCTCTCTGACGTGTTCCGGCTGTTATGCTTAATTCCATGTCCAGTTTGTAGTTCTGTTGGACCTTCAAGCAATTATATATTGGTTGTTCGG]
[+] EMBL AK103063 [CATCCGCCGCGGCGCCGCCACACTGCCGTAGCCCTCACGCACGTGGAGGGCGACACATCGGCGCACACCGCCGGCTCTCCGCCTCGCACAACGGAGCGAGGGCGTGGTGTGCGTGCCCGCCGGCCGCCGCTAGCTCCCCACTTCACGCCCCTCTCTTTGCCTCGCCTTCTCTTCTTCCCACTCTTCTCGTGCTCTCGCCGGCTTTTCTCCTCCGTCGTCGTTGGCCCATCGATGGTAGTTCGTCCCCAATCAAGTGCCATTGTGGCAACGTCTATACAAAGCATCATCTCGACGGTCTGCGAGCTTGAGCTCGAGATGCGGTGTTTCCCCATCTCATGCGAATCATTTGGGCCTTGTGAATCTCAACTCCCGAAGTGTCCAGGGTGAATGAGTGTATCCGTCTCCATCGTCAGCCTGCTGATACTCAGACAATGCTGATCTACCATCCCTCCTTTCAAGTTTCGTAGTTCAGGTCAACATTCATGACTTCGACAAACAGTCTGCCACCTTCATCAGCTCAGCCACTGGGGCCATCACCATCTCCTACATCATGAGGATATGCACAATGTGCTTTGTACAGAGGGATCGTGATCTAGGTGTTTGCAAAGAGCATGCGTGAGGGCTATATACCATTAGAGGAGCTCTTACAGACAATGCACAGACAATATAGTATTTCAAGCATCAGGTAGGCTTTCAGTCATTTACGAATTAGCATTTTTCTTTGTGTGTTTGCTCTCAGTACCCACTTGGTTCTTCATGTAGATTCTAGACGATTTAGGTTTGGCACTAATAGAACTAGACTTTCAGTTAAATGGATGATTTATATGCAGGAAGATCCAATTTGCTTGATACCCTATTATCTGTGTACCATTTTCAGTACTTTTGTTGTACGACTGTTATACCTATCCTGACAATGTTATAGATCATTGGATCAAATGGACTAGATCCTTCTTTACACTTTTAATTCTCTTAGCTGGTAGATCATTGAATGGTTAATATGGTCAATTATAGGTTGTATGCTAACATGGTGTATATTTGTCTGCAGGATTTTTTTTCTTCCCTTTACCCATCATCATTCTCTGCGGTGAGGTATTGTTTTTTATTTCTATTTTACTCATCCAGGCCTTCTGCAATAACTATTTTGATGAAACAATTGTAGTTTCCACAATTATATTCAGCTCTTTGTCTTTTAAAACTGAATTACTAGCTGTGAGCTCAGAATAGCAAAGTATTTGTTGTCGAAAATAGAGATGATTTCCTACAGCCCACTAAGGAGTGATAGCAGGATAGATGTGGCTCTTATGTATTATGGTGATTCACCTTGAACTAAAAAAAATATTTGTCTAGACAATTAATGCCTCCTATTTGCATCAATGAATAGTCAGTTTAAATGCATTGGGTATATTCGCCCAGTTCATTGTATTGCCAGTTGTTTCTGAATGTTACTTATTTAGTTTTTCAAAATATGTAGAGTAAATGACACCATAGTGAAAATTTTCCAATTCAACCATATGCTCATCCATTTTCTTCCCTTAAACGTGGAAAACACTTTTACTGGCAGTTGCACTTCAAAGTTTTAGCGAGAAAAGTTATTTCAGTATCTCAACTTGGCCGTTCCTTTTCACCATATAGTTGATAGCTTGATATTATAGAGAGATAACAGAACTCGCCAAAAGCGTTATAATTTTGATTGAATGCAAGATAACTGTAGTATACTTCCCTATGGGATTGTAAAATTCATCATTGCTTAATCTGTCAACCTTCAAATCATTGTCATCGGCAAGCATAGACTAATCTTCTTTTGTTTTACTGTTATAGGACTACTAGGGAGGGAGTTTCTGCGGTAATATATGCAACACCAAGCATATCCGATATACTTCCCGTCAGTGCAGGAGAGTAGTTTAGAGGTTGCATAAGTGCATGTCATTGCTGGAGTGTACCAGTATAAAATGTGCTGAAATTATTTCGTAGCTAATAAAGTAAATTTACAACCTTTTGTTTATACGGGTTACTGGTAATTAGTAAGTCTCTCTGACGTGTTCCGGCTGTTATGCTTAATTCCATGTCCAGTTTGTAGTTCTGTTGGACCTTCAAGCAATTATATATTGGTTGTTCGG]
consensusID : consensus_118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1010 fasta sequence
[GGCGCCGCCACACTGCCGTAGCCCTCACGCACGTGGAGGGCGACACATCGGCGCACACCGCCGGCTCTCCGCCTCGCACAACGGAGCGAGGGCGTGGTGTGCGTGCCCGCCGGCCGCCGCTAGCTCCCCACTTCACGCCCCTCTCTTTGCCTCGCCTTCTCTTCTTCCCACTCTTCTCGTGCTCTCGCCGGCTTTTCTCCTCCGTCGTCGTTGGCCCATCGATGGTAGTTCGTCCCCAATCAAGTGCCATTGTGGCAACGTCTATACAAAGCATCATCTCGACGGTCTGCGAGCTTGAGCTCGAAATGCGGTGTTTCCCCATCTCATGCGAATCATTTGGGCCTTGTGAATCTCAACTCCCGAAGTGTCCAGGGTGAATGAGTGTATCCGTCTCCATCGTCAGCCTGCTGATACTCAGACAATGCTGATCTACCATCCCTCCTTTCAAGTTTCGTAGTTCAGGTCAACATTCATGACTTCGACAAACAGTCTGCCACCTTCATCAGCTCAGCCACTGGGGCCATCACCATCTCCTACATCATGAGGATATGCACAATGTGCTTTGTACAGAGGGATCGTGATCTAGGTGTTTGCAAAGAGCATGCGTGAGGGCTATATACCATTAGAGGAGCTCTTACAGACAATGCACAGACAATATAGTATTTCAAGCATCAGGATTTTTTTTCTTCCCTTTACCCATCATCATTCTCTGCGGTGAGGACTACTAGGGAGGGAGTTTCTGCGGTAATATATGCAACACCAAGCATATCCGATATACTTCCCGTCAGTGCAGGAGAGTAGTTTAGAGGTTGCATAAGTGCATGTCATTGCTGGAGTGTACCAGTATAAAATGTGCTGAAATTATTTCGTAGCTAATAAAGTAAATTTACAACCTTTTGTTTATACGGGTTACTGGTAATTAGTAAGTCTCTCTGACGTGTTCCGGCTGTTATGCTTAATTCCATGTCCAGTTTGTAGTTCTGTTGGACCTTCAAGCAATTATATTGGTT]
[+] EMBL AK059743 [GGCGCCGCCACACTGCCGTAGCCCTCACGCACGTGGAGGGCGACACATCGGCGCACACCGCCGGCTCTCCGCCTCGCACAACGGAGCGAGGGCGTGGTGTGCGTGCCCGCCGGCCGCCGCTAGCTCCCCACTTCACGCCCCTCTCTTTGCCTCGCCTTCTCTTCTTCCCACTCTTCTCGTGCTCTCGCCGGCTTTTCTCCTCCGTCGTCGTTGGCCCATCGATGGTAGTTCGTCCCCAATCAAGTGCCATTGTGGCAACGTCTATACAAAGCATCATCTCGACGGTCTGCGAGCTTGAGCTCGAAATGCGGTGTTTCCCCATCTCATGCGAATCATTTGGGCCTTGTGAATCTCAACTCCCGAAGTGTCCAGGGTGAATGAGTGTATCCGTCTCCATCGTCAGCCTGCTGATACTCAGACAATGCTGATCTACCATCCCTCCTTTCAAGTTTCGTAGTTCAGGTCAACATTCATGACTTCGACAAACAGTCTGCCACCTTCATCAGCTCAGCCACTGGGGCCATCACCATCTCCTACATCATGAGGATATGCACAATGTGCTTTGTACAGAGGGATCGTGATCTAGGTGTTTGCAAAGAGCATGCGTGAGGGCTATATACCATTAGAGGAGCTCTTACAGACAATGCACAGACAATATAGTATTTCAAGCATCAGGATTTTTTTTCTTCCCTTTACCCATCATCATTCTCTGCGGTGAGGACTACTAGGGAGGGAGTTTCTGCGGTAATATATGCAACACCAAGCATATCCGATATACTTCCCGTCAGTGCAGGAGAGTAGTTTAGAGGTTGCATAAGTGCATGTCATTGCTGGAGTGTACCAGTATAAAATGTGCTGAAATTATTTCGTAGCTAATAAAGTAAATTTACAACCTTTTGTTTATACGGGTTACTGGTAATTAGTAAGTCTCTCTGACGTGTTCCGGCTGTTATGCTTAATTCCATGTCCAGTTTGTAGTTCTGTTGGACCTTCAAGCAATTATATTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_118#0 CATCCGCCGCGGCGCCGCCACACTGCCGTAGCCCTCACGCACGTGGAGGGCGACACATCG 60
consensus_118#1 ----------GGCGCCGCCACACTGCCGTAGCCCTCACGCACGTGGAGGGCGACACATCG 50
**************************************************
consensus_118#0 GCGCACACCGCCGGCTCTCCGCCTCGCACAACGGAGCGAGGGCGTGGTGTGCGTGCCCGC 120
consensus_118#1 GCGCACACCGCCGGCTCTCCGCCTCGCACAACGGAGCGAGGGCGTGGTGTGCGTGCCCGC 110
************************************************************
consensus_118#0 CGGCCGCCGCTAGCTCCCCACTTCACGCCCCTCTCTTTGCCTCGCCTTCTCTTCTTCCCA 180
consensus_118#1 CGGCCGCCGCTAGCTCCCCACTTCACGCCCCTCTCTTTGCCTCGCCTTCTCTTCTTCCCA 170
************************************************************
consensus_118#0 CTCTTCTCGTGCTCTCGCCGGCTTTTCTCCTCCGTCGTCGTTGGCCCATCGATGGTAGTT 240
consensus_118#1 CTCTTCTCGTGCTCTCGCCGGCTTTTCTCCTCCGTCGTCGTTGGCCCATCGATGGTAGTT 230
************************************************************
consensus_118#0 CGTCCCCAATCAAGTGCCATTGTGGCAACGTCTATACAAAGCATCATCTCGACGGTCTGC 300
consensus_118#1 CGTCCCCAATCAAGTGCCATTGTGGCAACGTCTATACAAAGCATCATCTCGACGGTCTGC 290
************************************************************
consensus_118#0 GAGCTTGAGCTCGAGATGCGGTGTTTCCCCATCTCATGCGAATCATTTGGGCCTTGTGAA 360
consensus_118#1 GAGCTTGAGCTCGAAATGCGGTGTTTCCCCATCTCATGCGAATCATTTGGGCCTTGTGAA 350
************** *********************************************
consensus_118#0 TCTCAACTCCCGAAGTGTCCAGGGTGAATGAGTGTATCCGTCTCCATCGTCAGCCTGCTG 420
consensus_118#1 TCTCAACTCCCGAAGTGTCCAGGGTGAATGAGTGTATCCGTCTCCATCGTCAGCCTGCTG 410
************************************************************
consensus_118#0 ATACTCAGACAATGCTGATCTACCATCCCTCCTTTCAAGTTTCGTAGTTCAGGTCAACAT 480
consensus_118#1 ATACTCAGACAATGCTGATCTACCATCCCTCCTTTCAAGTTTCGTAGTTCAGGTCAACAT 470
************************************************************
consensus_118#0 TCATGACTTCGACAAACAGTCTGCCACCTTCATCAGCTCAGCCACTGGGGCCATCACCAT 540
consensus_118#1 TCATGACTTCGACAAACAGTCTGCCACCTTCATCAGCTCAGCCACTGGGGCCATCACCAT 530
************************************************************
consensus_118#0 CTCCTACATCATGAGGATATGCACAATGTGCTTTGTACAGAGGGATCGTGATCTAGGTGT 600
consensus_118#1 CTCCTACATCATGAGGATATGCACAATGTGCTTTGTACAGAGGGATCGTGATCTAGGTGT 590
************************************************************
consensus_118#0 TTGCAAAGAGCATGCGTGAGGGCTATATACCATTAGAGGAGCTCTTACAGACAATGCACA 660
consensus_118#1 TTGCAAAGAGCATGCGTGAGGGCTATATACCATTAGAGGAGCTCTTACAGACAATGCACA 650
************************************************************
consensus_118#0 GACAATATAGTATTTCAAGCATCAGG-TAGGCTTTCAGTCATTTACGAATTAGCATTTTT 719
consensus_118#1 GACAATATAGTATTTCAAGCATCAGGATTTTTTTTCTTCCCTTTACCCATCATCATTCTC 710
************************** * **** * ***** ** * **** *
consensus_118#0 CTTTGTGTGTTTGCTCTCAGTACCCACTTGGTTCTTCATGTAGATTCTAGACGATTTAGG 779
consensus_118#1 TGCGGTGAGGAC-TACTAGGGAGGGAGTTTCTGCGGTA-ATATATGCAACACCAAGCATA 768
*** * ** * * * ** * * * ** ** * * ** * *
consensus_118#0 TTTGGCACTAATAGAACTAGACTTTCAGTTAAATGGATGATTTATATGCAGGAAGATCCA 839
consensus_118#1 TCCGATAT-------ACTTCCCGTCAGTGCAGGAGAGTAGTTTAGAGGTTGCATAAGTGC 821
* * * *** * * * * * **** * * * * *
consensus_118#0 ATTTGCTTGATACCCTATTATCTGTGTACCATTTTCAGTACTTTTGTTGTACGACTGTTA 899
consensus_118#1 ATGTCATTGCTGGAGTGT-ACCAGTATAAAATGTGCTGAAATTATTTCGTA--GCTAATA 878
** * *** * * * * * ** ** ** * * * * ** * * *** ** **
consensus_118#0 TACCTATCCTGACAATGTTATAGATCATTGGATCAAATGGACTAGATCCTTCTTTACACT 959
consensus_118#1 AAGTAAATTT-ACAACCTTTTGTTTATACGGGTTACTGGTAATTAGTAAGTCT-----CT 932
* * * **** ** * * ** * * * * * * *** **
consensus_118#0 TTTAATTCTCTTAGCTGGTAGATC--ATTGAATGGTTAATATGGTCAATTATAGGTTGTA 1017
consensus_118#1 CTGACGTGTTCCGGCTGTTATGCTTAATTCCATGTCCAGTTTG--TAGTTCT--GTTGGA 988
* * * * **** ** *** *** * * ** * ** * **** *
consensus_118#0 TGCTAACATGGTGTATATTTGTCTGCAGGATTTTTTTTCTTCCCTTTACCCATCATCATT 1077
consensus_118#1 CCTTCAAGCAAT-TATATTGGTT------------------------------------- 1010
* * * ****** **
consensus_118#0 CTCTGCGGTGAGGTATTGTTTTTTATTTCTATTTTACTCATCCAGGCCTTCTGCAATAAC 1137
consensus_118#1 ------------------------------------------------------------
consensus_118#0 TATTTTGATGAAACAATTGTAGTTTCCACAATTATATTCAGCTCTTTGTCTTTTAAAACT 1197
consensus_118#1 ------------------------------------------------------------
consensus_118#0 GAATTACTAGCTGTGAGCTCAGAATAGCAAAGTATTTGTTGTCGAAAATAGAGATGATTT 1257
consensus_118#1 ------------------------------------------------------------
consensus_118#0 CCTACAGCCCACTAAGGAGTGATAGCAGGATAGATGTGGCTCTTATGTATTATGGTGATT 1317
consensus_118#1 ------------------------------------------------------------
consensus_118#0 CACCTTGAACTAAAAAAAATATTTGTCTAGACAATTAATGCCTCCTATTTGCATCAATGA 1377
consensus_118#1 ------------------------------------------------------------
consensus_118#0 ATAGTCAGTTTAAATGCATTGGGTATATTCGCCCAGTTCATTGTATTGCCAGTTGTTTCT 1437
consensus_118#1 ------------------------------------------------------------
consensus_118#0 GAATGTTACTTATTTAGTTTTTCAAAATATGTAGAGTAAATGACACCATAGTGAAAATTT 1497
consensus_118#1 ------------------------------------------------------------
consensus_118#0 TCCAATTCAACCATATGCTCATCCATTTTCTTCCCTTAAACGTGGAAAACACTTTTACTG 1557
consensus_118#1 ------------------------------------------------------------
consensus_118#0 GCAGTTGCACTTCAAAGTTTTAGCGAGAAAAGTTATTTCAGTATCTCAACTTGGCCGTTC 1617
consensus_118#1 ------------------------------------------------------------
consensus_118#0 CTTTTCACCATATAGTTGATAGCTTGATATTATAGAGAGATAACAGAACTCGCCAAAAGC 1677
consensus_118#1 ------------------------------------------------------------
consensus_118#0 GTTATAATTTTGATTGAATGCAAGATAACTGTAGTATACTTCCCTATGGGATTGTAAAAT 1737
consensus_118#1 ------------------------------------------------------------
consensus_118#0 TCATCATTGCTTAATCTGTCAACCTTCAAATCATTGTCATCGGCAAGCATAGACTAATCT 1797
consensus_118#1 ------------------------------------------------------------
consensus_118#0 TCTTTTGTTTTACTGTTATAGGACTACTAGGGAGGGAGTTTCTGCGGTAATATATGCAAC 1857
consensus_118#1 ------------------------------------------------------------
consensus_118#0 ACCAAGCATATCCGATATACTTCCCGTCAGTGCAGGAGAGTAGTTTAGAGGTTGCATAAG 1917
consensus_118#1 ------------------------------------------------------------
consensus_118#0 TGCATGTCATTGCTGGAGTGTACCAGTATAAAATGTGCTGAAATTATTTCGTAGCTAATA 1977
consensus_118#1 ------------------------------------------------------------
consensus_118#0 AAGTAAATTTACAACCTTTTGTTTATACGGGTTACTGGTAATTAGTAAGTCTCTCTGACG 2037
consensus_118#1 ------------------------------------------------------------
consensus_118#0 TGTTCCGGCTGTTATGCTTAATTCCATGTCCAGTTTGTAGTTCTGTTGGACCTTCAAGCA 2097
consensus_118#1 ------------------------------------------------------------
consensus_118#0 ATTATATATTGGTTGTTCGG 2117
consensus_118#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||