cluster # 11801

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Oryza sativa
cluster # 11801 cluster # 11801 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11801#0 length = 1570 sequences # 5

consensus_11801#1 length = 1244 sequences # 3
consensus_11801#2 length = 653 sequences # 1

consensusID : consensus_11801#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1570
fasta sequence

                              [GAAGACGGCACGAGGAAGGCCGCCGCGCCCCCTTAAACCTCACCTAGCTAGAGCCTAGAACCAGCGCGCCCACGGCAACGAAGCCCACACAAACCACCCTTCTTCTTCTTCTTCTTCGGCGGCGGCGGCGGCGGCGATGGCGAGGCCGAGGAGGCGAGGAGGCGCCGGCGCGTGGGTGGCGGCGGTTCTTGCTGCGGCGCTGCAGGTTCTTGCGGTGTCCGCCGCGGGGAAGTACAGGGCGGTGTTCAATTTCGGGGACTCGCTGGTGGACGCCGGCAACCTGGTCACGGACGGCATCCCGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTACTTCGGCTACCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGCGCAAGAGTTCGGCCTGCCGCTGCTGCCCCCTTCCAAGGCCAAGAACGCCAGCTTCGCGCGGGGCGCCAACTTCGCCATCACCGGCGCCACCGCGCTCGACACCGACTTCTTCGAGAGGCGCGGCCTCGGCAAGACGGTCTGGAACTCCGGCTCCCTCTTCACCCAAATCCAGTGGCTGCGCGACATCAAGCCCTCCTTCTGCAGCTCCACCCAAGATTGCAAGGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAGTTCGGCGGGAACGACTACAATGCGCCGCTCTTCGCGGGGAAGGACCTCAGGGAGGCCTACAATTTGATGCCTCATGTCGTTCAGGGCATATCCGATGGCGTTGAGCAACTGATTGCCGAGGGCGCGAGGGACTTGATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTCCGGTGTACTTGACCATGTACAAAGAGCCCAAGGAGGGGTATGGTTCGCGTAGCAGTTGCCTGAAGCGGTTCAATACGTTCTCATGGGTGCACAATTCGATGCTCAAGCGAGCGCTAGCAAAGCTCCGTGCCAAGCATCCTGGGGTGAGGATCATTTACGGGGATTATTTCACGCCGGTTGTCCAATTCTTGCTTCAGCCCGAAAAGTTTGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCCGACCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGTTGCATGGCCCATTCGGGGATCAACCTATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCATCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTATGAGTAAAAAA-AG-GTGTATTGCACAAAG-TGGTTAACATATGATACAGAGTTTCTTTGTGTGTAGCATCTGCTTATCTAATTAAAAACCAGTATNGGTTCCTAAAAAAAAAAAAGA]

[+] EMBL CB652231             [GAAGACGGCACGAGGAAGGCCGCCGCGCCCCCTTAAACCTCACCTAGCTAGAGCCTAGAACCAGCGCGCCCACGGCAACGAAGCCCACACAAACCACCCTTCTTCTTCTTCTTCTTCGGCGGCGGCGGCGGCGGCGATGGCGAGGCCGAGGAGGCGAGGAGGCGCCGGCGCGTGGGTGGCGGCGGTTCTTGCTGCGGCGCTGCAGGTTCTTGCGGTGTCCGCCGCGGGGAAGTACAGGGCGGGGTTCAATTTCGGGGACTCGCTGGTGGACGCCGGCAACCTGGTCACGGACGGCATCACGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTACTTCGGCTACCCCACCGGCCGCTGCTCCGACGGCCGCCTCATCGTCGACTTCATCGCGCAAGAGTTCGGGCTGCCGCTGCTGCCCCCTTCCAAGGCCAAGAACGCCAGCTTCGCACGGGGCGCCAACTGCGCCATCACCGGAGCCACCGCGCTCGACACCGACTTCTTCGAGAGGCGCGGCCTCTGCAAGACGGTCTGGAACTCCGGCTCCCTCTTCACCCAAATCCAGTGGCTGCGCGACATCAAGCCCTCCTTCTGCAGCTCCACCCAAGATTGCAAGGATTTCTTCGCCAAGTCCCTGTTCGTCGACAGCGAGTTCGGCGGGAACGACTACAATGCGCCGCTCTTCGCGGGGAAGGACCTCAGGGAGGCCTACAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK059898             [                                                                                                 CCTTCTTCTTCTTCTTCTTCGGCGGCGGCGGCGGCGGCGATGGCGAGGCCGAGGAGGCGAGGAGGCGCCGGCGCGTGGGTGGCGGCGGTTCTTGCTGCGGCGCTGCAGGTTCTTGCGGTGTCCGCCGCGGGGAAGTACAGGGCGGTGTTCAATTTCGGGGACTCGCTGGTGGACGCCGGCAACCTGGTCACGGACGGCATCCCGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTACTTCGGCTACCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGCGCAAGAGTTCGGCCTGCCGCTGCTGCCCCCTTCCAAGGCCAAGAACGCCAGCTTCGCGCGGGGCGCCAACTTCGCCATCACCGGCGCCACCGCGCTCGACACCGACTTCTTCGAGAGGCGCGGCCTCGGCAAGACGGTCTGGAACTCCGGCTCCCTCTTCACCCAAATCCAGTGGCTGCGCGACATCAAGCCCTCCTTCTGCAGCTCCACCCAAGATTGCAAGGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAGTTCGGCGGGAACGACTACAATGCGCCGCTCTTCGCGGGGAAGGACCTCAGGGAGGCCTACAATTTGATGCCTCATGTCGTTCAGGGCATATCCGATGGCGTTGAGCAACTGATTGCCGAGGGCGCGAGGGACTTGATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTCCGGTGTACTTGACCATGTACAAAGAGCCCAAGGAGGGGTATGGTTCGCGTAGCAGTTGCCTGAAGCGGTTCAATACGTTCTCATGGGTGCACAATTCGATGCTCAAGCGAGCGCTAGCAAAGCTCCGTGCCAAGCATCCTGGGGTGAGGATCATTTACGGGGATTATTTCACGCCGGTTGTCCAATTCTTGCTTCAGCCCGAAAAGTTTGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCCGACCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGTTGCATGGCCCATTCGGGGATCAACCTATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCATCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTATGAGTAAAAAA AG GTGTATTGCACAAAG TGGTTAACATATGATACAGAGTTTCTT                                                            ]
[+] EMBL CB652480             [                                                                                                                                                     GGAGGCGCTTAAGCTCCGGCGCGTGGTTGGCGGCGGTTCTTGCTGCGGCGCTGCAGGTTCTTGCGGTGTCCGCCGCGGGGAAGTACAGGGCGGTGTTCAATTTCGGGGACTCGCTGGTGGACGCCGGCAACCTGGTCACGGACGGCATCCCGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTACTTCGGCTACCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGCGCAAGAGTTCGGCCTGCCGCTGCTGCCCCCTTCCAAGGCCAAGAACGCCAGCTTCGCGCGGGGCGCCAACTTCGCCATCACCGGCGCCACCGCGCTCGACACCGACTTCTTCGAGAGGCGCGGCCTCGGCAAGACGGTCTGGAACTCCGGCTCCCTCTTCACCCAAATCCAGTGGCTGCGCGACATCAAGCCCTCCTTCTGCAGCTCCACCCAAGATTGCAAGGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAGTTCGGCGGGAACGACTACAATGCGCCGCTCTTCGCGGGGAAGGACCTCAGGGAGGCCTACAATTTGATGCCTCATGTCGTTCAGGGCATATCCGATGGCGTTGAGCAACTGATTGCCGAGGGCGCGAGGGACTTGATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTCCGGTGTACTTGACCATGTACAAAGAGCCCAAGGAGGGGTATGGTTCGCGTAGCAGTTGCCTGAAGCGGTTCAATACGTTCTCATGGGTGCACAATTCGATGCctc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB652232             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGCGAGGGACTTGATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTCCGGTGTACTTGACCATGTACAAAGAGCCCAAGGAGGGGTATGGTTCGCGTAGCAGTTGCCTGAAGCGGTTCAATACGTTCTCATGGGTGCACAATTCGATGCTCAAGCGAGCGCTAGCAAAGCTCCGTGCCAAGCATCCTGGGGTGAGGATCATTTACGGGGATTATTTCACGCCGGTTGTCCAATTCTTGCTTCAGCCCGAAAAGTTTGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCCGACCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGTTGCATGGCCCATTCGGGGATCAACCTATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCATCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTATGAGTAAAAAA AGNGTGTATTGCACAAAG TGGTTAACATATGATACAGAGTTTCTTTGTGTGTAGCATCTGCTTATCTAATTAAAAACCAGTATNGGTTCCTAAAAAAAAAAAAGA]
[-] EMBL CB663894             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCCGGTGTACTTGACCATGTACAAAGAGCCCAAGGAGGGGTATGGTTCGCGTAGCAGTTGCCTGAAGCGGTTCAATACGTTCTCATGGGTGCACAATTCGATGCTCAAGCGAGCGCTAGCAAAGCTCCGTGCCAAGCATCCTGGGGTGAGGATCATTTACGGGGATTATTTCACGCCGGTTGTCCAATTCTTGCTTCAGCCCGAAAAGTTTGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCCGACCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGTTGCATGGCCCATTCGGGGATCAACCTATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCATCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTATGAGTAAAAAACAG GTGTATTGCACAAAGCTGGTTAACATATGATACAGAGTTTCTTTGTGTGTAGCATCTGCTTATCTAATTAAAAACCAcgt                       ]




>consensus_11801#0
GAAGACGGCACGAGGAAGGCCGCCGCGCCCCCTTAAACCTCACCTAGCTAGAGCCTAGAA
CCAGCGCGCCCACGGCAACGAAGCCCACACAAACCACCCTTCTTCTTCTTCTTCTTCGGC
GGCGGCGGCGGCGGCGATGGCGAGGCCGAGGAGGCGAGGAGGCGCCGGCGCGTGGGTGGC
GGCGGTTCTTGCTGCGGCGCTGCAGGTTCTTGCGGTGTCCGCCGCGGGGAAGTACAGGGC
GGTGTTCAATTTCGGGGACTCGCTGGTGGACGCCGGCAACCTGGTCACGGACGGCATCCC
GGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTACTTCGGCTACCCCACCGG
CCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGCGCAAGAGTTCGGCCTGCCGCT
GCTGCCCCCTTCCAAGGCCAAGAACGCCAGCTTCGCGCGGGGCGCCAACTTCGCCATCAC
CGGCGCCACCGCGCTCGACACCGACTTCTTCGAGAGGCGCGGCCTCGGCAAGACGGTCTG
GAACTCCGGCTCCCTCTTCACCCAAATCCAGTGGCTGCGCGACATCAAGCCCTCCTTCTG
CAGCTCCACCCAAGATTGCAAGGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAGTT
CGGCGGGAACGACTACAATGCGCCGCTCTTCGCGGGGAAGGACCTCAGGGAGGCCTACAA
TTTGATGCCTCATGTCGTTCAGGGCATATCCGATGGCGTTGAGCAACTGATTGCCGAGGG
CGCGAGGGACTTGATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTCCGGTGTACTTGAC
CATGTACAAAGAGCCCAAGGAGGGGTATGGTTCGCGTAGCAGTTGCCTGAAGCGGTTCAA
TACGTTCTCATGGGTGCACAATTCGATGCTCAAGCGAGCGCTAGCAAAGCTCCGTGCCAA
GCATCCTGGGGTGAGGATCATTTACGGGGATTATTTCACGCCGGTTGTCCAATTCTTGCT
TCAGCCCGAAAAGTTTGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGG
GACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATG
TGCCGACCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGG
ACATATCGCGCGAGGTTGGTTGCATGGCCCATTCGGGGATCAACCTATCGTACAGAATTC
TTGAGCTCCTAGTTGTTTTGTCCATCGTACCTCTAGGGTATCAGAATAGCACAGCAAATT
GGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCA
GGTAAAAAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCA
TCAGGTGAGGTGGTATGAGTAAAAAAAGGTGTATTGCACAAAGTGGTTAACATATGATAC
AGAGTTTCTTTGTGTGTAGCATCTGCTTATCTAATTAAAAACCAGTATNGGTTCCTAAAA
AAAAAAAAGA

consensusID : consensus_11801#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1244
fasta sequence

                              [GCAACAGCAGCATGGTTGTCCTTTATTTTCTTGAGCTGATTTCATCAAATTATTATTTATTTTCATGACATTCATGATAGTGATAGTATTTTGTCCTGACTTCATGTTGATAAGGAGGGAATACATCCTTGCTCATATAAGCAGGATATGCATTTATTCCAAGAAATAGACCTATGGTTTTTTCTTGTCCAAGTGGATACAGGGAGTTGGTACCTGACTTTTTTGCTCTAAATCCAGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCTGACCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGTTGCATGGCCCA-TTCGGGGATCAACCAATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCA-TCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTATGAGTAAAAAAAGGTGTATTG-CACAAAGTGGTTAACATATGATACAGAGTTTCTTTGTGTGTAGCATCTGCTTATCTAATTAAAAACCAGTATGGTTCCTAACTTGCAACTTTGTCTGAATATATTGCGTGCCTTAGTTTACTTTTTACATAAAGTGGCCGCCAGAAGTATCTATTCTCTACATTGGCATGGTTCCTGGGAGAAGAATCTGAAATACTATAAAAATTGGCAGTGGGTTGGATTGTGGGACTTATGCGTTTCATGCTGTGCAGTTGAAAGTTGGAGACCTGAACCTGATCTGTATGGTCCCTTTATTATATTCCATGCTTGTTTGCCATATGTTGAACAGCTTTGCAGGTCCCAGATTAGTGGGAAGACAAGAAGCTTCAGCTTGCAGACTAGCGTGGATCCCACTATTTCTGTAAGTGATTAGCTGTGTAGAAGCTTCTGTTTATGCAAAACAAAGTGGAGTTATCATGATGACCTGGCAAGTAATGTTTTTATTCCTGAAGAGTCGAGGCATATGGCATGACAGATATGTGCTGTATATGAATAGTGCATTTTTAATTGGAAGATGATGTAAACCAAA]

[+] EMBL AK120456             [GCAACAGCAGCATGGTTGTCCTTTATTTTCTTGAGCTGATTTCATCAAATTATTATTTATTTTCATGACATTCATGATAGTGATAGTATTTTGTCCTGACTTCATGTTGATAAGGAGGGAATACATCCTTGCTCATATAAGCAGGATATGCATTTATTCCAAGAAATAGACCTATGGTTTTTTCTTGTCCAAGTGGATACAGGGAGTTGGTACCTGACTTTTTTGCTCTAAATCCAGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCCGACCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGTTGCATGGCCCA TTCGGGGATCAACCTATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCA TCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTATGAGTAAAAAAAGGTGTATTG CACAAAGTGGTTAACATATGATACAGAGTTTCTTTGTGTGTAGCATCTGCTTATCTAATTAAAAACCAGTATGGTTCCTAACTTGCAACTTTGTCTGAATATATTGCGTGCCTTAGTTTACTTTTTACATAAAGTGGCCGCCAGAAGTATCTATTCTCTACATTGGCATGGTTCCTGGGAGAAGAATCTGAAATACTATAAAAATTGGCAGTGGGTTGGATTGTGGGACTTATGCGTTTCATGCTGTGCAGTTGAAAGTTGGAGACCTGAACCTGATCTGTATGGTCCCTTTATTATATTCCATGCTTGTTTGCCATATGTTGAACAGCTTTGCAGGTCCCAGATTAGTGGGAAGACAAGAAGCTTCAGCTTGCAGACTAGCGTGGATCCCACTATTTCTGTAAGTGATTAGCTGTGTAGAAGCTTCTGTTTATGCAAAACAAAGTGGAGTTATCATGATGACCTGGCAAGTAATGTTTTTATTCCTGAAGAGTCGAGGCATATGGCATGACAGATATGTGCTGTATATGAATAGTGCATTTTTAATTGGAAGATGATGTAAACCAAA]
[-] EMBL CB625685             [          CATGGTTGTCCTTTATTTTCTTGAGCTGATTTCATCAAATTATTATTTATTTTCATGACATTCATGATAGTGATAGTATTTTGTCCTGACTTCATGTTGATAAGGAGGGAATACATCCTTGCTCATATAAGCAGGATATGCATTTATTCCAAGAAATAGACCTATGGTTTTTTCTTGTCCAAGCGGATACAGGGAGTTGGTACCTGACTTTTTTGCTCTAAATCCAGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCTGACCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGTTGCATGGCCCA TTCGGGGATCAACCAATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCA TCGTACCTCTAGGTTATCAAAATAcc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM420090             [                                                                                                                                                                                                                                                  TAC AACCATT CCTAGACCAT CTGTGGTGCTCCT GGACGGGACCTTACAATTTCAATCTGAC GCCCAATGCGGTGAGCCTGGTGCC CTGCATGTGCTGACCCCCAGACACACTGGAGCTGGGATGGTATTCACTTGACCGA GCCGCATATGGACATATCGCGCGAGGTTGGTTGCATGGCCCACTTCGGGGATCAACCCATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCACTCGTACCTCTAGGGTATCAGAATAGCCCAGCCAATTGGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCCGGTAAAAAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAA CCTGATTTTGTTCATTCATCA GTGAGTTGTTATGAGTAAAAAAAGGTGTATTGCCACCAAGTGGTTAACATATGATACAGAGTTTCTTTGTGTGTA CATCTGCTTATCTAATTAAAAACCCGTATGGTTCCTca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_11801#1
GCAACAGCAGCATGGTTGTCCTTTATTTTCTTGAGCTGATTTCATCAAATTATTATTTAT
TTTCATGACATTCATGATAGTGATAGTATTTTGTCCTGACTTCATGTTGATAAGGAGGGA
ATACATCCTTGCTCATATAAGCAGGATATGCATTTATTCCAAGAAATAGACCTATGGTTT
TTTCTTGTCCAAGTGGATACAGGGAGTTGGTACCTGACTTTTTTGCTCTAAATCCAGGAT
TTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTACAATTTCA
ATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCTGACCCCAAGACACACT
GGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGT
TGCATGGCCCATTCGGGGATCAACCAATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTG
TCCATCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGGTTGTTTCC
ATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAAAAGTTGAG
ATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTATGAGT
AAAAAAAGGTGTATTGCACAAAGTGGTTAACATATGATACAGAGTTTCTTTGTGTGTAGC
ATCTGCTTATCTAATTAAAAACCAGTATGGTTCCTAACTTGCAACTTTGTCTGAATATAT
TGCGTGCCTTAGTTTACTTTTTACATAAAGTGGCCGCCAGAAGTATCTATTCTCTACATT
GGCATGGTTCCTGGGAGAAGAATCTGAAATACTATAAAAATTGGCAGTGGGTTGGATTGT
GGGACTTATGCGTTTCATGCTGTGCAGTTGAAAGTTGGAGACCTGAACCTGATCTGTATG
GTCCCTTTATTATATTCCATGCTTGTTTGCCATATGTTGAACAGCTTTGCAGGTCCCAGA
TTAGTGGGAAGACAAGAAGCTTCAGCTTGCAGACTAGCGTGGATCCCACTATTTCTGTAA
GTGATTAGCTGTGTAGAAGCTTCTGTTTATGCAAAACAAAGTGGAGTTATCATGATGACC
TGGCAAGTAATGTTTTTATTCCTGAAGAGTCGAGGCATATGGCATGACAGATATGTGCTG
TATATGAATAGTGCATTTTTAATTGGAAGATGATGTAAACCAAA

consensusID : consensus_11801#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [TCTTCTTCTTCGGCGGCGGCGGCGGCGGCGATGGCGAGGCCGAGGAGGCGAGGAGGCGCCGGCGCGTGGGTGGCGGCGGTTCTTGCTGCGGCGCTGCAGGTTCTTGCGGTGTCCGCCGCGGGGAAGTACAGGGCGGTGTTCAATTTCGGGGACTCGCTGGTGGACGCCGGCAACCTGGTCACGGACGGCATCCCGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTACTTCGGCTACCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGCGCAAGAGTTCGGCCTGCCGCTGCTGCCCCCTTCCAAGGCCAAGAACGCCAGCTTCGCGCGGGGCGCCAACTTCGCCATCACCGGCGCCACCCAAATCCAGTGGCTGCGCGACATCAAGCCCTCCTTCTGCAGCTCCACCCAAGATTGCAAGGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAGTTCGGCGGGAACGACTACAATGCGCCGCTCTTCGCGGGGAAGGACCTCAGGGAGGCCTACAATTTGATGCCTCATGTCGTTCAGGGCATATCCGATGGCGTTGAGCAACTGATTGCCGAGGGCGCGAGGGACTTGATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTTCCGT]

[+] EMBL CB663893             [TCTTCTTCTTCGGCGGCGGCGGCGGCGGCGATGGCGAGGCCGAGGAGGCGAGGAGGCGCCGGCGCGTGGGTGGCGGCGGTTCTTGCTGCGGCGCTGCAGGTTCTTGCGGTGTCCGCCGCGGGGAAGTACAGGGCGGTGTTCAATTTCGGGGACTCGCTGGTGGACGCCGGCAACCTGGTCACGGACGGCATCCCGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTACTTCGGCTACCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGCGCAAGAGTTCGGCCTGCCGCTGCTGCCCCCTTCCAAGGCCAAGAACGCCAGCTTCGCGCGGGGCGCCAACTTCGCCATCACCGGCGCCACCCAAATCCAGTGGCTGCGCGACATCAAGCCCTCCTTCTGCAGCTCCACCCAAGATTGCAAGGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAGTTCGGCGGGAACGACTACAATGCGCCGCTCTTCGCGGGGAAGGACCTCAGGGAGGCCTACAATTTGATGCCTCATGTCGTTCAGGGCATATCCGATGGCGTTGAGCAACTGATTGCCGAGGGCGCGAGGGACTTGATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTTCCGT]




>consensus_11801#2
TCTTCTTCTTCGGCGGCGGCGGCGGCGGCGATGGCGAGGCCGAGGAGGCGAGGAGGCGCC
GGCGCGTGGGTGGCGGCGGTTCTTGCTGCGGCGCTGCAGGTTCTTGCGGTGTCCGCCGCG
GGGAAGTACAGGGCGGTGTTCAATTTCGGGGACTCGCTGGTGGACGCCGGCAACCTGGTC
ACGGACGGCATCCCGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTACTTC
GGCTACCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGCGCAAGAG
TTCGGCCTGCCGCTGCTGCCCCCTTCCAAGGCCAAGAACGCCAGCTTCGCGCGGGGCGCC
AACTTCGCCATCACCGGCGCCACCCAAATCCAGTGGCTGCGCGACATCAAGCCCTCCTTC
TGCAGCTCCACCCAAGATTGCAAGGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAG
TTCGGCGGGAACGACTACAATGCGCCGCTCTTCGCGGGGAAGGACCTCAGGGAGGCCTAC
AATTTGATGCCTCATGTCGTTCAGGGCATATCCGATGGCGTTGAGCAACTGATTGCCGAG
GGCGCGAGGGACTTGATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTTCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11801#0      ------------------------------------------------------------
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      GCAACAGCAGCATGGTTGTCCTTTATTTTCTTGAGCTGATTTCATCAAATTATTATTTAT 60
                                                                                   

consensus_11801#0      ------------------------------------------------------------
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      TTTCATGACATTCATGATAGTGATAGTATTTTGTCCTGACTTCATGTTGATAAGGAGGGA 120
                                                                                   

consensus_11801#0      ------GAAGACGGCACGAGGAAGGCCGCCGCGCCCCCTTAAACCTCACCTAGCTAGAGC 54
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ATACATCCTTGCTCATATAAGCAGGATATGCATTTATTCCAAGAAATAGACCTATGGTTT 180
                                                                                   

consensus_11801#0      CTAGAACCAGCGCGCCCACGGCAACGAAGCCCACACAAACCACCCTTCTTCTTCTTCTTC 114
consensus_11801#2      ----------------------------------------------------TCTTCTTC 8
consensus_11801#1      TTTCTTGTCCAAGTGGATACAGGGAGTTGGTACCTGACTTTTTTGCTCTAAATCCAGGAT 240
                                                                           **      

consensus_11801#0      TTCGGCGGCGGCGGCGGCGGCGATG--GCGAGGCCGAGGAGGCGAGGAGGCGCCGGCGCG 172
consensus_11801#2      TTCGGCGGCGGCGGCGGCGGCGATG--GCGAGGCCGAGGAGGCGAGGAGGCGCCGGCGCG 66
consensus_11801#1      TTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACG-GGACCTTACAATTTC 299
                       **      *    **   *   ***  * *  **    * * ** ***     *      

consensus_11801#0      TGGGTGGCGGCGGTTCTTGCTGCGGC-GCTGCAGGTTCTTGCGGTGTCCGC----CGCGG 227
consensus_11801#2      TGGGTGGCGGCGGTTCTTGCTGCGGC-GCTGCAGGTTCTTGCGGTGTCCGC----CGCGG 121
consensus_11801#1      AATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCTGACCCCAAGACACAC 359
                           ** ****       * ** * * * ***   * * ** * ** ** *    * *  

consensus_11801#0      GGAAGTACAGGGCGGTGTTCAATTTCGGGGACTCGCTGGTGGACGC----CGGCAACCTG 283
consensus_11801#2      GGAAGTACAGGGCGGTGTTCAATTTCGGGGACTCGCTGGTGGACGC----CGGCAACCTG 177
consensus_11801#1      TGGAGC-TGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTG 418
                        * **    **  *** **** **    *    ***   *****      **  *   **

consensus_11801#0      GTCACGGACGGCATCCCGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTAC 343
consensus_11801#2      GTCACGGACGGCATCCCGGACTACCTCGCCACCGCGCGCCCGCCCTACGGCCAGACCTAC 237
consensus_11801#1      GTTGCATGGCCCATTCGGGG--ATCAACCAATCGTACAGAATTCTTGAGCTCCTAGTTGT 476
                       **  *      *** * **   * *   * * **  *      * *  *  *  *  *  

consensus_11801#0      TTCGGCTACCCCACCGGCCGCTGCTCCGA------CGGCCGCCTCG-TCGTCGACTTCAT 396
consensus_11801#2      TTCGGCTACCCCACCGGCCGCTGCTCCGA------CGGCCGCCTCG-TCGTCGACTTCAT 290
consensus_11801#1      TTTGTCCATCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGGTTGT 536
                       ** * * * *  ***    *    ** **      * **    * * **    *  *  *

consensus_11801#0      CGCGCAAGAGTTCGGCCTGCCGCTGCTGC--CCCCTTCCAA---GGCCAAGAACGCCAGC 451
consensus_11801#2      CGCGCAAGAGTTCGGCCTGCCGCTGCTGC--CCCCTTCCAA---GGCCAAGAACGCCAGC 345
consensus_11801#1      TTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAAAAGT 596
                         *   * ****     *    ** ** *    * ** * *   **  ** **    ** 

consensus_11801#0      TTCGCGCGGGGCGCC---AACTTCGCCATCACCGGCGCCACCGCGCTCGACACCGACTTC 508
consensus_11801#2      TTCGCGCGGGGCGCC---AACTTCGCCATCACCGGCGCCACC------------------ 384
consensus_11801#1      TGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTAT 656
                       *  *   * *  * *   ** *    *** *       **                    

consensus_11801#0      TTCGAGAGGCGCGGCCTCGGCAAGACGGTCTGGAACTCCGGCTCCCTCTTCACCCAAATC 568
consensus_11801#2      ------------------------------------------------------CAAATC 390
consensus_11801#1      GAGTAAAAAAAGGTGTATTGCACAAAGTGGTTAACATATGATACAGAGTTTCTTTGTGTG 716
                                                                                 * 

consensus_11801#0      CAGTGGCTGCGCGAC--ATCAAGCCC-----TCCTTCTGCAGCTCCACCCAAGATTGCAA 621
consensus_11801#2      CAGTGGCTGCGCGAC--ATCAAGCCC-----TCCTTCTGCAGCTCCACCCAAGATTGCAA 443
consensus_11801#1      TAGCATCTGCTTATCTAATTAAAAACCAGTATGGTTCCTAACTTGCAACTTTGTCTGAAT 776
                        **   ****    *  ** **   *     *  ***   *  * ** *   *  ** * 

consensus_11801#0      GGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAGTTCGGCGGGAACGACTA--CAAT 679
consensus_11801#2      GGATTTCTTCGCCAAGTCCCTGTTCGTCGTCGGCGAGTTCGGCGGGAACGACTA--CAAT 501
consensus_11801#1      ATATTGCGTGCCTTAGTTTACTTTTTACAT-AAAGTGGCCGCCAGAAGTATCTATTCTCT 835
                         *** * *  *  ***     **   * *    * *  ** * * *    ***  *  *

consensus_11801#0      GCGCCGCT----CTTCGCGGGGAAGGACCTCAGGGAGGCCTACAATTTGATGCCTCATGT 735
consensus_11801#2      GCGCCGCT----CTTCGCGGGGAAGGACCTCAGGGAGGCCTACAATTTGATGCCTCATGT 557
consensus_11801#1      ACATTGGCATGGTTCCTGGGAGAAGAATCTGAAATACTATAAAAATTGGCAGTGGGTTGG 895
                        *   *       * *  ** **** * ** *   *     * **** *  *     ** 

consensus_11801#0      CGTTCAGGGCATATCCGATG-GCGTTGAGCAACTGATTGCCGAGGGCGCGAGG--GACTT 792
consensus_11801#2      CGTTCAGGGCATATCCGATG-GCGTTGAGCAACTGATTGCCGAGGGCGCGAGG--GACTT 614
consensus_11801#1      ATTGTGGGACTTATGCGTTTCATGCTGTGCAGTTGAAAGTTGGAGACCTGAACCTGATCT 955
                         *   ** * *** ** *    * ** ***  ***  *  *  * *  **    **  *

consensus_11801#0      GATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTCCGGTGTACTTGACCATGTACAAAGA 852
consensus_11801#2      GATTGTGCCCGGAGTGATGCCATCCGGTTGCTTTTCCGT--------------------- 653
consensus_11801#1      GTATGGTCCCTTTATTATATTCCATGCTTG-TTTGCCATATGTTGAACAGCTTTGCAGGT 1014
                       *  **  ***    * **       * *** *** *  *                     

consensus_11801#0      GCCCAAGGAGGGGTATGGTTCGCGTAGCAGTTGCCTGAAGCGGTTCAATACGTTCTCATG 912
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      CCCAGATTAGTGGGAAGACAAGAAGCTTCAGCTTGCAGACTAGCGTGGATCCCACTATTT 1074
                                                                                   

consensus_11801#0      GGTGCACAATTCGATGCTCAAGCGAGCGCTAGCAAAGCTCCGTGCCAAGCATCCTGGGGT 972
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      CTGTAAGTGATTAGCTGTGTAGAAGCTTCTGTTTATGCAAAACAAAGTGGAGTTATCATG 1134
                                                                                   

consensus_11801#0      GAGGATCATTTACGGGGATTATTTCACGCCGGTTGTCCAATTCTTGCTTCAGCCCGAAAA 1032
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ATGACCTGGCAAGTAATGTTTTTATTCCTGAAGAGTCGAGGCATATGGCATGACAGATAT 1194
                                                                                   

consensus_11801#0      GTTTGGATTTTACAAACAATTGCCTAGAGCATGCTGTGGTGCTCCTGGGACGGGACCTTA 1092
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      GTGCTGTATATGAATAGTGCATTTTTAATTGGAAGATGATGTAAACCAAA---------- 1244
                                                                                   

consensus_11801#0      CAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCCGACCCCAA 1152
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ------------------------------------------------------------
                                                                                   

consensus_11801#0      GACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCG 1212
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ------------------------------------------------------------
                                                                                   

consensus_11801#0      AGGTTGGTTGCATGGCCCATTCGGGGATCAACCTATCGTACAGAATTCTTGAGCTCCTAG 1272
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ------------------------------------------------------------
                                                                                   

consensus_11801#0      TTGTTTTGTCCATCGTACCTCTAGGGTATCAGAATAGCACAGCAAATTGGATCAGAAAGG 1332
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ------------------------------------------------------------
                                                                                   

consensus_11801#0      TTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAAAAAGAA 1392
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ------------------------------------------------------------
                                                                                   

consensus_11801#0      AAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTG 1452
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ------------------------------------------------------------
                                                                                   

consensus_11801#0      GTATGAGTAAAAAAAGGTGTATTGCACAAAGTGGTTAACATATGATACAGAGTTTCTTTG 1512
consensus_11801#2      ------------------------------------------------------------
consensus_11801#1      ------------------------------------------------------------
                                                                                   

consensus_11801#0      TGTGTAGCATCTGCTTATCTAATTAAAAACCAGTATNGGTTCCTAAAAAAAAAAAAGA 1570
consensus_11801#2      ----------------------------------------------------------
consensus_11801#1      ----------------------------------------------------------