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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 914 fasta sequence
[CTCCATCTGCCAACAAACTCGCTAGCTACCAGGAGAGGACCATTAACGATTTAATACACTGACACACACACACATATGTGCAAGTTCGATCGATACAAGACAGGAAGAGATCACCATGTCTAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGC-CCGGTGCCGGC-----CGGCGGCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGACGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAGATCCGTGTTTTTTTGCCATCTTCATTTTGTTTGTTTTGTGGTTTTCACACGGTTCCATGTGTGATCAGTTGAGGCTAGCTACGGCCATGGATTGGTAAATTGTTAATTAGATTTTGGGATCAGATCTTGCATAG]
[+] EMBL AK059793 [CTCCATCTGCCAACAAACTCGCTAGCTACCAGGAGAGGACCATTAACGATTTAATACACTGACACACACACACATATGTGCAAGTTCGATCGATACAAGACAGGAAGAGATCACCATGTCTAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGC CCGGTGCCGGCGGCGGCGGCGGCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGGCGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAGATCCGTGTTTTTTTGCCATCTTCATTTTGTTTGTTTTGTGGTTTTCACACGGTTCCATGTGTGATCAGTTGAGGCTAGCTACGGCCATGGATTGGTAAATTGTTAATTAGATTTTGGGATCAGATCTTGCATAG]
[+] EMBL AK071528 [ TCTGCCAACAAACTCGCTAGCTACCAGGAGAGGACCATTAACGATTTAATACACTGACACACACACACATATGTGCAAGTTCGATCGATACAAGACAGGAAGAGATCACCATGTCTAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGC CCGGTGCCGGCGGCGGCGGCGGCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGGCGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAGATCCGTG ]
[+] EMBL AU066177 [ AACTCGCTAGCTACCAGGAGAGGACCATTAACGATTTAATACACTGACACACACACACATATGTGCAAGTTCGATCGATACAAGACAGGAAGAGATCACCATGTCTAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGC NTCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGCACCGGTG ]
[+] EMBL CB633179 [ CGCTACCT TCAGGAGAGGACCATTAACGATTTAATACACTGACACACACACACATATGTGCAAGTTCGATCGATACAAGACAGGAAGAGATCACCATGTCTAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGC CCGGT GC CGGCGGCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGACGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGATTGGCATATATATATGTATGTAGCCTACGTAGTTGTAGATCCATGGAATATTACATAGATCCGTGTTTTTTTGCCATCTTCATTTTGTTTGTTTTGAGGTTTTCACACGGTT ]
[+] EMBL AU183949 [ TACACTGACACACACACACATATGTGCAAGTTCGATCGATACAAGACAGGAAGAGATCACCATGTCTAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGC CCGGTGCCGGC ]
[+] EMBL CB631455 [ ACATCTGTGCAAGTTCGATCGATACAAGACAGGAAGAGATCACCATGTCTAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGC CCGGT GC CGGCGGCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGACGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAGATCCGTGTTTTTTTGC ]
[-] EMBL CB633180 [ GTTCGATCGATACAAGACAGGAAGAGATCACCATGTCTAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGC CCGGT GC CGGCGGCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGACGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAGATCCGTGTTTTTTTGCCATCTTCATTTTGTTTGTTTTGTGGTTTTCACACGGTTCCATGTGTGATCAGTTGAGGCTAGCTACGTTCAT GATTGGTAAATTGTTAATTAGA ]
consensusID : consensus_11804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence
[ATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGCCCGGTGCCGGCGGCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGACGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAGATCCGTGTTTTTTTGCCATCTTCATTTTGTTTGTTTTGTGGTTTTCACACGGTTCCATGTGTGATCAGTGGAGGCTAGCTACGGCCATGGATTGGTAAAAAAAAAAAAAAGGA]
[-] EMBL CB631456 [ATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTGCAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGAGGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGCCCGGTGCCGGCGGCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGACGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAGATCCGTGTTTTTTTGCCATCTTCATTTTGTTTGTTTTGTGGTTTTCACACGGTTCCATGTGTGATCAGTGGAGGCTAGCTACGGCCATGGATTGGTAAAAAAAAAAAAAAGGA]
[+] EMBL CF335905 [ CGGTTCCATGTGTGATCAGTTGAGGCTAGCTACGGCCATGGGTTGGTAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11804#0 CTCCATCTGCCAACAAACTCGCTAGCTACCAGGAGAGGACCATTAACGATTTAATACACT 60
consensus_11804#1 ------------------------------------------------------------
consensus_11804#0 GACACACACACACATATGTGCAAGTTCGATCGATACAAGACAGGAAGAGATCACCATGTC 120
consensus_11804#1 ------------------------------------------------------------
consensus_11804#0 TAGCTAGCTAAATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTG 180
consensus_11804#1 -----------ATTAATAAGCTAGCTAGAGCTGGTTGCATGGTTGATTAGCTACGACGTG 49
*************************************************
consensus_11804#0 CAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGA 240
consensus_11804#1 CAGTTGATTAGAGATGGAAGAGATCGCCGGTGGTGGCTCGCCGCCGGCGATGGAGGAGGA 109
************************************************************
consensus_11804#0 GGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGCCCGGTGCCGGCCGGCG 300
consensus_11804#1 GGAGAGGTATGTGGAGGTGGCGTCGAGGTTCTACCGCGTGAAGCCCGGTGCCGGC----G 165
******************************************************* *
consensus_11804#0 GCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCG 360
consensus_11804#1 GCGGCCGCCGTCTCCACTTCCTCGAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCG 225
************************************************************
consensus_11804#0 ACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGG 420
consensus_11804#1 ACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAGCGACGACTGCAGGCAGG 285
************************************************************
consensus_11804#0 AGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGT 480
consensus_11804#1 AGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGT 345
************************************************************
consensus_11804#0 CGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGACGGCGCCGGCGAGGTCTCCGATGATGC 540
consensus_11804#1 CGGCGGCGCCGGCTTCCGCCGAGGCAGCAGCGACGGCGCCGGCGAGGTCTCCGATGATGC 405
************************************************************
consensus_11804#0 ACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGT 600
consensus_11804#1 ACCGCCGGCCGACCATCGCCAACTTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGT 465
************************************************************
consensus_11804#0 GTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAA 660
consensus_11804#1 GTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCCGCTGCGTTCATGATCAA 525
************************************************************
consensus_11804#0 CTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTG 720
consensus_11804#1 CTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTG 585
************************************************************
consensus_11804#0 GATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAG 780
consensus_11804#1 GATTGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAG 645
************************************************************
consensus_11804#0 ATCCGTGTTTTTTTGCCATCTTCATTTTGTTTGTTTTGTGGTTTTCACACGGTTCCATGT 840
consensus_11804#1 ATCCGTGTTTTTTTGCCATCTTCATTTTGTTTGTTTTGTGGTTTTCACACGGTTCCATGT 705
************************************************************
consensus_11804#0 GTGATCAGTTGAGGCTAGCTACGGCCATGGATTGGTAAATTGTTAATTAGATTTTGGGAT 900
consensus_11804#1 GTGATCAGTGGAGGCTAGCTACGGCCATGGATTGGTAAAAAAAAAAAAAAGGA------- 758
********* ***************************** ** *
consensus_11804#0 CAGATCTTGCATAG 914
consensus_11804#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||