These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1914 fasta sequence [TCGTCCACGCCGAGACGAGACGAGACAGTCGGGCGACGGGACAGCAGCTGCAGCCTGCACTGCAGCACAGCCGTCAGCCGCCTCCCCAACCTCCCGCCGCCGCCGCCGCCGCCGCATCCGCATGGAGCCCGACGCCGCAGCGGCCGCGGCCGCCGGCGAGAGGGAGGCGGAGATCGAGAAGGCCTTCCGCGCCCGCCTCCCCGACTTCAGGAAGCAGGCCGACTCCTTAACCCTCGAAGGTGTAAGGAGAGCACTGGAGAAGGACATGGGCTTGG-AGAAACATTCACTTGACGCCCATAAAAAGTTCATAAAGCAATGTGTAGACAAGGTTTTTTCTGGTTCTGATGATGACAATACGAATAATAATGCACCAGAGAAGGATGAAGCTAAAGATGACCGTTCTTCTAAAGAAGAATCAGAAGATGCCCAACCAACATCTGACTCGAACAAAATTTCCTCCAATGCTGATGAGCCGGTGGCAAAATCCAGTGAGACAGATAGAGATCAGGAGGGAGACAAAGATCATAGTTCTGGCAGTGACATTAGTGAAGCTACGATAAAAAATGCTATTGTCAAAAGGGCCTCATATTTTAGAGAGAACTCAGAAACTATTACTTTACAAGGAGTTCGCCGGACTTTAGAAGAAGATCTCAAGC-TTCAGAAGAAAGCTTTGGATGCTTACAAGTCTTTTATTTCGACGGAATTAGACAATATTCTTCAAGAACCTGCAAATGGGACAAAGAAAACTAGTAAAACTGAATCTCATAAGGATTCTGGCCAGAAGACAAGCAAAAACTCTAAGAGAGCTCGTCAAGACTCTGATACTTCTGAAATAAATGATAGCCATTGTGAGAGGGGAGACAGTGATGAGGATGCAAGG-CCAAAAAAGAAAAAGGCTGAAAAGGGCAAAGCTGTAAAAAGGCAGAAAAAAACTACAGTGGAGAAACAACTGTCAAATTCAAAGGCTAAAAAGGTTGCCAAAAAAGATTTAGATAAAAGTAAAGAGCGGAGTGGATCAGAAGAAGATAATTCAAATTCATCA-GCTGAAGAAGATAATAAGAAAAAACGA-CAAGTAGCTCCAGCTTACGGGAAA-CGGGTGGAA-CGGCTGAAGTCAATAATCAAATCTTGTGGAATGAGTATCGCA-CCTA-CTGTGTATCGGAAGG-CAAAGATGGCTCCTGAGAG-CAAGCGTGAAGCCTGTTTGATAAAGGAGTTGGAGGATATACTTGAAAAAGAAGGATTGTCAACAAACCCCTCTGAAAAAGAAA-TTAAAGCAGTCAAGAAAAGAAAGGAAAGAGCAAAGGAACTCGAGGGCATAGATATGAGCAACATTATCACAAGTTCTCGTCGGAGAAGTACATCGAATTTCATACCCCTGCCAACGCCTAAAATAGTAGCTGATAGTGATGAAGATGACGAAGAAGACGCAGAAGATGACAATGATGAGGAGGTGAATGTGGAGGGTGGAGATGAAGGTGACAATGATGTTGGAAAAGCTGGCGATGGATCTGCTGATGATGCTGAGCACGACAGTGATTGATTCTTGCGGTTTCTAAGGTGGAAGCAGGCAATTCTGACCATGCAAGTTCATCTCATGTTGATTTGGCCTAGACGCCTAGTTGGCTGTCCGTGCGTGGATGGAGGCAGTTGTTTAGAAGTTTAACTTATGAGTTTATTCTGTTTATTCGAAACATATTCTTTAGCTCTAGCGTTGGTGAAACATTAGCGCAGATGATTCTTGTAGCTCCCATCTCATTATTATGTATAATATATATCAGGTTTGTTANCTGAATTTTCGANCGTGTANTCCTGTAGACTCTAGTTTGAAAACGGCGTGACANTCCTGTANCGGACAGTTATTTTATTAGTTCATCACTTATAGTGTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK064128 [TCGTCCACGCCGAGACGAGACGAGACAGTCGGGCGACGGGACAGCAGCTGCAGCCTGCACTGCAGCACAGCCGTCAGCCGCCTCCCCAACCTCCCGCCGCCGCCGCCGCCGCCGCATCCGCATGGAGCCCGACGCCGCAGCGGCCGCGGCCGCCGGCGAGAGGGAGGCGGAGATCGAGAAGGCCTTCCGCGCCCGCCTCCCCGACTTCAGGAAGCAGGCCGACTCCTTAACCCTCGAAGGTGTAAGGAGAGCACTGGAGAAGGACATGGGCTTGG AGAAACATTCACTTGACGCCCATAAAAAGTTCATAAAGCAATGTGTAGACAAGGTTTTTTCTGGTTCTGATGATGACAATACGAATAATAATGCACCAGAGAAGGATGAAGCTAAAGATGACCGTTCTTCTAAAGAAGAATCAGAAGATGCCCAACCAACATCTGACTCGAACAAAATTTCCTCCAATGCTGATGAGCCGGTGGCAAAATCCAGTGAGACAGATAGAGATCAGGAGGGAGACAAAGATCATAGTTCTGGCAGTGACATTAGTGAAGCTACGATAAAAAATGCTATTGTCAAAAGGGCCTCATATTTTAGAGAGAACTCAGAAACTATTACTTTACAAGGAGTTCGCCGGACTTTAGAAGAAGATCTCAAGC TTCAGAAGAAAGCTTTGGATGCTTACAAGTCTTTTATTTCGACGGAATTAGACAATATTCTTCAAGAACCTGCAAATGGGACAAAGAAAACTAGTAAAACTGAATCTCATAAGGATTCTGGCCAGAAGACAAGCAAAAACTCTAAGAGAGCTCGTCAAGACTCTGATACTTCTGAAATAAATGATAGCCATTGTGAGAGGGGAGACAGTGATGAGGATGCAAGG CCAAAAAAGAAAAAGGCTGAAAAGGGCAAAGCTGTAAAAAGGCAGAAAAAAACTACAGTGGAGAAACAACTGTCAAATTCAAAGGCTAAAAAGGTTGCCAAAAAAGATTTAGATAAAAGTAAAGAGCGGAGTGGATCAGAAGAAGATAATTCAAATTCATCA GCTGAAGAAGATAATAAGAAAAAACGA CAAGTAGCTCCAGCTTACGGGAAA CGGGTGGAA CGGCTGAAGTCAATAATCAAATCTTGTGGAATGAGTATCGCA CCTA CTGTGTATCGGAAGG CAAAGATGGCTCCTGAGAG CAAGCGTGAAGCCTGTTTGATAAAGGAGTTGGAGGATATACTTGAAAAAGAAGGATTGTCAACAAACCCCTCTGAAAAAGAAA TTAAAGCAGTCAAGAAAAGGAAGGAAAGAGCAAAGGAACTCGAGGGCATAGATATGAGCAACATTATCACAAGTTCTCGTCGGAGAAGTACATCGAATTTCATACCCCTGCCAACGCCTAAAATAGTAGCTGATAGTGATGAAGATGACGAAGAAGACGCAGAAGATGACAATGATGAGGAGGTGAATGTGGAGGGTGGAGATGAAGGTGACAATGATGTTGGAAAAGCTGGCGATGGATCTGCTGATGATGCTGAGCACGACAGTGATTGATTCTTGCGGTTTCTAAGGTGGAAGCAGGCAATTCTGACCATGCAAGTTCATCTCATGTTGATTTGGCCTAGACGCCTAGTTGGCTGTCCGTGCGTGGATGGAGGCAGTTGTTTAGAAGTTTAACTTATGAGTTTATTCTGTTTATTCGAAACATATTCTTTAGCTCTAGCGTTGGTGAAACATTAGCGCAGATGATTCTTGTAGCTCCCATCTCATTATTATGTATAATATATATCAGGT ] [+] EMBL AK108583 [ CACGCCGAGACGAGACGAGACAGTCGGGCGACGGGACAGCAGCTGCAGCCTGCACTGCAGCACAGCCGTCAGCCGCCTCCCCAACCTCCCGCCGCCGCCGCCGCCGCCGCATCCGCATGGAGCCCGACGCCGCAGCGGCCGCGGCCGCCGGCGAGAGGGAGGCGGAGATCGAGAAGGCCTTCCGCGCCCGCCTCCCCGACTTCAGGAAGCAGGCCGACTCCTTAACCCTCGAAGGTGTAAGGAGAGCACTGGAGAAGGACATGGGCTTGG AGAAACATTCACTTGACGCCCATAAAAAGTTCATAAAGCAATGTGTAGACAAGGTTTTTTCTGGTTCTGATGATGACAATACGAATAATAATGCACCAGAGAAGGATGAAGCTAAAGATGACCGTTCTTCTAAAGAAGAATCAGAAGATGCCCAACCAACATCTGACTCGAACAAAATTTCCTCCAATGCTGATGAGCCGGTGGCAAAATCCAGTGAGACAGATAGAGATCAGGAGGGAGACAAAGATCATAGTTCTGGCAGTGACATTAGTGAAGCTACGATAAAAAATGCTATTGTCAAAAGGGCCTCATATTTTAGAGAGAACTCAGAAACTATTACTTTACAAGGAGTTCGCCGGACTTTAGAAGAAGATCTCAAGC TTCAGAAGAAAGCTTTGGATGCTTACAAGTCTTTTATTTCGACGGAATTAGACAATATTCTTCAAGAACCTGCAAATGGGACAAAGAAAACTAGTAAAACTGAATCTCATAAGGATTCTGGCCAGAAGACAAGCAAAAACTCTAAGAGAGCTCGTCAAGACTCTGATACTTCTGAAATAAATGATAGCCATTGTGAGAGGGGAGACAGTGATGAGGATGCAAGG CCAAAAAAGAAAAAGGCTGAAAAGGGCAAAGCTGTAAAAAGGCAGAAAAAAACTACAGTGGAGAAACAACTGTCAAATTCAAAGGCTAAAAAGGTTGCCAAAAAAGATTTAGATAAAAGTAAAGAGCGGAGTGGATCAGAAGAAGATAATTCAAATTCATCA GCTGAAGAAGATAATAAGAAAAAACGA CAAGTAGCTCCAGCTTACGGGAAA CGGGTGGAA CGGCTGAAGTCAATAATCAAATCTTGTGGAATGAGTATCGCA CCTA CTGTGTATCGGAAGG CAAAGATGGCTCCTGAGAG CAAGCGTGAAGCCTGTTTGATAAAGGAGTTGGAGGATATACTTGAAAAAGAAGGATTGTCAACAAACCCCTCTGAAAAAGAAA T ] [+] EMBL CB639370 [ GCACTGCAGCACAGCCGTCAGCCGCCTCCCCAACCTCCCGCCGCCGCCGCCGCCGCCGCATCCGCATGGAGCCCGACGCCGCAGCGGCCGCGGCCGCCGGCGAGAGGGAGGCGGAGATCGAGAA GCCTTCCGCGCCCGCCTTCCCGACTTCATGAAGCAGGCCGACTCCTTAACCCTCGAAGGTGTAAGGAGAGCTCTGGAGAAGGACATGGGCTTGGTACAAACATTCACTTGACGCCCGTCAAAAGTTCATAAAGCAATGTGTAGACAAGGTTTTTTCTGGTTCTGCTGAT ] [+] EMBL AU091756 [ GATCGAGAAGGCCTTCCGCGCCCGCCTCCCCGACTTCAGGAAGCAGGCCGACTCCTTAACCCTCGAAGGTGTAAGGAGAGCACTGGAGAAGGACATGGGCTTGG AGAAACATTCACTTGACGCCCATAAAAAGTTCATAAAGCAATGTGTAGACAAGGTTTTTTCTGGTTCTGATGATGACAATACGAATAATAATGCACCAGAGAAGGATGAAGCTAAAGATGACCGTTCTTCTAAAGAAGAATCAGAAGATGCCCAACCAACATCTGACTCGAACAAAATTTCCTCCAATGCTGATGAGCCGGTGGCAAAATCCAGTGAGACAGATAGAGATCAGGAGGGAGACAAAGATCATAGTTCTGGCAGTGACATTAGTGAAGCTACGATAAAAAATGCTATTGTCAAAAGGGCCTCATATTTTAGAGAGAACTCAGAAACTATTACTTTACAAGGAGTTCGCCGGACTTTAGAAGAAGATCTCAAGC TTCAGAAGAAAGCTTTGGATGCTTACAA ] [-] EMBL BU672815 [ TAGA ATCA GA GGA AC AAGAT ATAG TCT GCAGT ACATTAG GAA CTACGAT AAAATGCTA TGTCAAAA GGCCTCATA TTTAGAGAG ACTCAG AACTATTACTTTAC AGGAGTTCCCCGGACTNTAGAAGAAGATCTCAAGCTTTCAGAAGAAAGCTTTGGATGCTTACAAGTCTTTTATTTCGACGGAATTAGACAATATTCTTCAAGAACCTGCAAATGGGACAAAGAAAACTAGTAAAACTGAATCTCATAAGGATTCTGGCCAGAAGACAAGCAAAAACTCTAAGAGAGCTCGTCAAGACTCTGATACTTCTGAAATAAATGATAGCCATTGTGAGAGGGGAGACAGTGATGAGGATGCAAGGCCCAAAAAAGAAAAAGGCTGAAAAGGGCAAAGCTGTAAAAAGGCAGAAAAAAACTACAGTGGAGAAACAACTGTCAAATTCAAAGGCTAAAAAGGTTGCCAAAAAAGATTTAGATAAAAGTAAAGAGCGGAGTGGATCAGAAGAAGATAATTCAAATTCATCA GCTCAAGAAGATAATAAGAAAAAACGA CAAGTAGCTCCAGCTTACGGGAAA CGGGTGGAA CGGCTGAAGTCAATAATCAAATCTTGTGGAATGAGTATCGCA CCTA CTGTGTATCGGAAGG CAAAGATGGCTCCTGAGAG CAAGCGTGAAGCCTGTTTGATAAAGGAGTTGGAGGATATACTTGAAAAAGAAGGATTGTCTAC AACCCCTCTGAAAAAGAAA TT ] [+] EMBL BM421543 [ CTCGTCAAGACTCTGATACTTCTGAAATAAATGATAGCCCTTGTGAGAGGGGAGACCGTGATGAGGATGCAAGG CCCAAAAAGAAAAAGGCTGAAAAGGGCCAAGCTGTAAAAAGGCAGAAAAAAACTACCGTGGAGAAACCACTGTCCAATTCCAAGGCTAAAAAGGTTGCCCAAAAAGATTTAGATAAAAGTAAAGAGCGGAGTGGATCAGAAGAAGATAATTCAAATTCATCACGCTGAAGAAGATAATAAGAAAAAACGACCCAGTAGCTCCAGCTTACGGGAAACCGGGTGGAA CGGCTGAAGTCAATAATCAAATCTTGTGGAATGAGTATCGCACCCTACCTGTGTATCGGAAGGCCCAAGATGGCTCCTGAGAGCCAAGCGTGAAGCCTGTTTGATAAAGGAGTTGGAGGATATACTTGAAAAAGAAGGATTGTCAACCAACCCCTCTGAAAAAGAAACNTAAANCAGTCANAAAAAAAAAa ] [+] EMBL AU181887 [ AAATTCATCA GCTGAAGAAGATAATAAGAAAAAACGA CAAGTAGCTCCAGCTTACGGGAAA CGGGTGGAACCGGCTGAAGTCAATAATCAAATCTTGTGGAATGAGTATCGCA CCTA CTGTGTATCGGAAGG CAAAGATGGCTCCTGAGAG CAAGCGTGAAGCCTGTTTGATAAAGGAGTTGGAGGATATACTTGAAAAAGAAGGATTGTCAACAAACCCCTCTGAAAAAGAAA TTAAAGCAGTCAAGAAAAGAAAGGAAAGAGCAAAGGAACTCGAGGGCATAGATATGAGCAACATTATCACAAGTTCTCGTCGGAGAAGTACATCGAATTTCATACCCCTGCCAACGCCTAAAATAGTAGCTGATAGTGATGAAGATGACGAAGAAGACGCAGAAGATGACAATGATGAGGAGGTGAATGTGGAGGGTGGAGATGAAGGTGACAAT ] [+] EMBL C28559 [ AAATTCATCA GCTGAAGAAGATAATAAGAAAAAACGA CAAGTAGCTCCAGCTTACGGGAAA CGGGTGGAA CGGCTGAAGTCAATAATCAAATCTTGTGGAATGAGTATCGCA CCTA CTGTGTATCGGAAGG CAAAGATGGCTCCTGAGAG CAAGCGTGAAGCCTGTTTGATAAAGGAGTTGGAGGATATACTTGAAAAAGAAGGATTGTCAACAAACCCCTCTGAAAAAGAAA TTAAAGCAGTCAAGAAAAGAAAGGAAAGAGCAAAGGAACTC ] [+] EMBL AU091757 [ AATGATG TGGAAAAACTGGCGATGGANCTGCTGATGATGCTGAGCACGACAGTGATTGATTCTTGCGGTTTCTAAGGTGGAANCAGGCAATTCTGACCATGCAAGTTCATCTCATGTTGATTTGGCCTANACGCCTAGTTGGCTGTCCGTGCGTGGATGGAGGCAGTTGTTCAGAAGTTTAACTTATGAGTTTANTCTGTTTANTCGAAACATATTCTTTAGCTCTANCGTTGGTGAAACATTAGCGCAGATGATTCTTGTAGCTCCCATCTCATTATTATGTATAATATATANCAGGTTTGTTANCTGAATTTTCGANCGTGTANTCCTGTAGACTCTAGTTTGAAAACGGCGTGACANTCCTGTANCGGACAGTTATTTTATTAGTTCATCACTTATAGTGTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||