These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 775 fasta sequence [TAGTCTTCTACTGACCGACCAGTTGAGATAATTTGAGAAATATCCATTGCAATCTATTTTAATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCTGAGCATCACCCACACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAAGTTGGGGGATAATTGGGAAGTGCCCCTGCNCNTGTTGC-TTAGTAATGTTAAAC-TTGGCCATTTTATGGATTCCCGGAAATTTNGATNTCCCATANCTCTAACCCCTNCCCAAATCCGCCCAAACCCNTGCCAATTCCTGCGCCCGGGGGNTCCTTATTCTAAACCGCCCCCCCGCGGNGAACCCCCCTTTNTTCCCTTANTGANGGTTAATTCAANCTGGNTTATCNGGGNCAACTGTTTCCGTTTNAATTTTTCCCCCCNTNCCCCACTTTAACCGAACNTAATNTTANCCGGGGGCCANNATGACCANCCCTATGTTGNCCCGCCCTCCTTCGGAACTTTGCCNNNTTAAACCNCCCCCGGGAGGGGTGTTTTGGCCCCCCCCCCCCNA] [-] EMBL CB679972 [TAGTCTTCTACTGACCGACCAGTTGAGATAATTTGAGAAATATCCATTGCAATCTATTTTAATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCTTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCTGAGCATCACCCACACCATCTCCAACACGAACGCCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAA ] [+] EMBL BE229257 [ AATATCCATTGCAATCTATTTTAATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAAATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTATTCGGCGACGGCGAGGCAGGAGGAAAGCCAGCCGCTGAGCATCACCCACACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCCAATCACACCAAAAAGAACTAGAAACGAAGTTGGGGGATAATTGGGAAGTGCCCCTGCNCNTGTTGC TTAGTAATGTTAAAC TTGGCCATTTTATGGATTCCCGGAAATTTNGATNTCCCATANCTCTAACCCCTNCCCAAATCCGCCCAAACCCNTGCCAATTCCTGCGCCCGGGGGNTCCTTATTCTAAACCGCCCCCCCGCGGNGAACCCCCCTTTNTTCCCTTANTGANGGTTAATTCAANCTGGNTTATCNGGGNCAACTGTTTCCGTTTNAATTTTTCCCCCCNTNCCCCACTTTAACCGAACNTAATNTTANCCGGGGGCCANNATGACCANCCCTATGTTGNCCCGCCCTCCTTCGGAACTTTGCCNNNTTAAACCNCCCCCGGGAGGGGTGTTTTGGCCCCCCCCCCCCNA] [-] EMBL CA752847 [ cgggcagGTGCAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCGGGAGGAGAGCCAGCCGCTGAGCATCACCCACACCATCTCCAACACGAACACCTCCA CCTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAAGTT GGGGATAATTGGGAAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTT ] consensusID : consensus_11810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 727 fasta sequence [TTTTTTTTTTGAGATAATTTGAGAAATATCCATTGCAATCTATTTTAATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCTGAGCATCA--CCCACACCATCTCCAACACG-AACACCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAACTAGGGAAGAACAGAAAATCGTTAGCTTATGATCATTTCCATCTGATACCAGCACAAGCTAGGAGAAGCTGATATACAGTGCTCCAAATTCTAAGCGAGAGTTTTTTTAAAAAAAATTTATTTTGCAGCAAAATGAAACAGAAAAACTAACAGACTAAGCAAAATAAAGCAGAGAATTCAACAGGGTAGAGAGCCTTACGTTGGGGATAATTGGGAAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTTTATGGAGTACCTGGAAATTTGGATCTCACATAGCTCTAAGCAGAAGGGGGGATAAGGAATTGCAGGGGTTTTTCTACTCCTTCAGTCCAGTCA] [+] EMBL CF279773 [TTTTTTTTTTGAGATAATTTGAGAAATATCCATTGCAATCTATTTTAATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAATCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCTGAGCATCA CCCACACCATCTCCAACACG AACACCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAACTAGGGAAGAACAGAAAATCGTTAGCTTATGATCATTTC ] [-] EMBL AK120788 [ CATTGCAATCTATTTTAATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCTGAGCATCA CCCACACCATCTCCAACACG AACACCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAACTAGGGAAGAACAGAAAATCGTTAGCTTATGATCATTTCCATCTGATACCAGCACAAGCTAGGAGAAGCTGATATACAGTGCTCCAAATTCTAAGCGAGAGTTTTTTTAAAAAAAATTTATTTTGCAGCAAAATGAAACAGAAAAACTAACAGACTAAGCAAAATAAAGCAGAGAATTCAACAGGGTAGAGAGCCTTACGTTGGGGATAATTGGGAAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTTTATGGAGTACCTGGAAATTTGGATCTCACATAGCTCTAAGCAG ] [-] EMBL CF279772 [ AACCAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCTGAGCATCAACCCCACACCATCTCCAACACGAAACACCTTCCCACTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAACTAGGGAAGAACAGAAAATCGTTAGCTTATGATCATTTCCATCTGATACCAGCACAAGCTAGGAGAAGCTGATATACAGTGCTCCAAATTCTAAGCGAGAGTTTTTTTAAAAAAAATTTATTTTGCAGCAAAATGAAACAGAAAAACTAACAGACTAGGCAAAATAAAGCAGAGAATTCAACAGGGTAGAGAGCCTTACGTTGGGGATAATTGGGAAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTTTATGGAGTACCTGGAAATTTGGATCTCACATAGCTCTAAGCAGAAGGGGGGATAAGGAATTGCAGGGGTTTTTCTACTCCTTCAGTCCAGTCA] consensusID : consensus_11810#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 493 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTAATTTGAGAAATATCCATTGCAATCTATTTTAATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCTAGCCG--GAGACGTC-CTCGCACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGGTTGGGGATAATTGGGAAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTTTATGGAGTACCTGGAAATTTGGATCTCACATAGCTCTAAGCAGAAGGGGGGATAAGGAATT] [-] EMBL BE229367 [TTTTTTTTTTTTTTTTTTTTTTTTTAATTTGAGAAATATCCATTGCAATCTATTTTAATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCTAGCCG GAGACGTC CTCG ] [-] EMBL CF305344 [ TGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACAATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCATGGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACTCTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCCGAGA ATCACCCACACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGGTTGGGGATAATTGGGAAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTTTATGGAGTACCTGGAAATTTGGATCTCACATAGCTCTAAGCAGAAGGGGGGATAAGGAATT] consensusID : consensus_11810#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [GTCACCACNNNGNCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCTGAGCATCACCCACACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAAGTTGGGGATAATTGGGAAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTTTATGGAGTACCTGGAAATTTGGATCTCACATAGCTCTAAGCAGAAGGGGG] [-] EMBL CF196365 [GTCACCACNNNGNCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCTGAGCATCACCCACACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATCACACCAAAAAGAGCTAGAAACGAAGTTGGGGATAATTGGGAAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTTTATGGAGTACCTGGAAATTTGGATCTCACATAGCTCTAAGCAGAAGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11810#0 TAGTCTTCTACTGACCGACCAGTTGAGATAATTTGAGAAATATCCATTGCAATCTATTTT 60 consensus_11810#3 ------------------------------------------------------------ consensus_11810#2 ----TTTTTTTTTTTTTTTTTTTTTTTTTAATTTGAGAAATATCCATTGCAATCTATTTT 56 consensus_11810#1 --------------TTTTTTTTTTGAGATAATTTGAGAAATATCCATTGCAATCTATTTT 46 consensus_11810#0 AATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACA 120 consensus_11810#3 ------------------------------------------------------------ consensus_11810#2 AATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACA 116 consensus_11810#1 AATTTGCCTCAAATCATGTCGTACAAAAAAAAATTAAAATAACATTCGGATATATACACA 106 consensus_11810#0 ATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCAT 180 consensus_11810#3 ------------------------------------------------------------ consensus_11810#2 ATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCAT 176 consensus_11810#1 ATTGCAATGTGTATAAATGCTCACAAACACACAAAGAAACCAAACAACAAATGCAGGCAT 166 consensus_11810#0 GGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACT 240 consensus_11810#3 ---------------------------------------------------GTCACCACN 9 consensus_11810#2 GGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACT 236 consensus_11810#1 GGAAGATGATTTATATCCAGTTCGTCCAAAGAAATTCTAGCCGGAGACGTCGTCACCACT 226 ******** consensus_11810#0 CTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCT 300 consensus_11810#3 NNGNCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCT 69 consensus_11810#2 CTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCTAGCCGGA 296 consensus_11810#1 CTGCCTGAGCGCCGTGGCGACGTAGTCGGCGACGGCGAGGCAGGAGGAGAGCCAGCCGCT 286 * ************************************************ ***** consensus_11810#0 GAGCATCACCCACACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATC 360 consensus_11810#3 GAGCATCACCCACACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATC 129 consensus_11810#2 GA-CGTC-CTCGCACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATC 354 consensus_11810#1 GAGCATCACCCACACCATCTCCAACACGAACACCTCCACCCTCCAAAGCACCATCAAATC 346 ** * ** * * ************************************************ consensus_11810#0 ACACCAAAAAGAGCTAGAAACGAAGTTGGGGGATAATTGGGAAGTG----CCCCTGCNCN 416 consensus_11810#3 ACACCAAAAAGAGCTAGAAACGAAGTTGGGG-ATAATTGGGAAGTG----CCCTTGCTCT 184 consensus_11810#2 ACACCAAAAAGAG-----------GTTGGGG-ATAATTGGGAAGTG----CCCTTGCTCT 398 consensus_11810#1 ACACCAAAAAGAGCTAGAAACGA-ACTAGGGAAGAACAGAAAATCGTTAGCTTATGATCA 405 ************* * *** * ** * ** * * ** * consensus_11810#0 TGTTGCTT-AGTAAT-GTTAAACTT-GGCCATTTT-ATGGATT-C-CCGGAAATTTNGAT 470 consensus_11810#3 TGTTGCTTTAGTAGT-GTAGAACTTTGGCCATTTTTATGGAGTAC-CTGGAAATTTGGAT 242 consensus_11810#2 TGTTGCTTTAGTAGT-GTAGAACTTTGGCCATTTTTATGGAGTAC-CTGGAAATTTGGAT 456 consensus_11810#1 TTTCCATCTGATACCAGCACAAGCTAGGAGAAGCTGATATACAGTGCTCCAAATTCTAAG 465 * * * ** * ** * ** * * ** * * ***** * consensus_11810#0 NTCCCATANCTCTAACCCCTNCCCAAATCCGCCCAAACCCNTGCC---AATTCCTGCGCC 527 consensus_11810#3 CTCACATAGCTCTAAGCAGAAGGGGG---------------------------------- 268 consensus_11810#2 CTCACATAGCTCTAAGCAGAAGGGGGGATAAGGAATT----------------------- 493 consensus_11810#1 CGAGAGTTTTTTTAAAAAAAATTTATTTTGCAGCAAAATGAAACAGAAAAACTAACAGAC 525 * * *** consensus_11810#0 CGGGGGNTCCTTATTCTAAACCGCCCCCCCGCGGNGAACCCCCCTTTNTTCCCTTANTGA 587 consensus_11810#3 ------------------------------------------------------------ consensus_11810#2 ------------------------------------------------------------ consensus_11810#1 TAAGCAAAATAAAGCAGAGAATTCAACAGGGTAGAGAGCCTTACGTTGGGGATAATTGGG 585 consensus_11810#0 NGGTTAATTCAANCTGGNTTATCNGGGNCAACTGTTTCCGTTTNAATTTTTCCCCCCNTN 647 consensus_11810#3 ------------------------------------------------------------ consensus_11810#2 ------------------------------------------------------------ consensus_11810#1 AAGTGCCCTTGCTCTTGTTGCTTTAGTAGTGTAGAACTTTGGCCATTTTTATGGAGTACC 645 consensus_11810#0 CCCCACTTTA-ACCGAACNTAATNTTANCCGGGGGCCANNATGACCANCCCTATGTTGNC 706 consensus_11810#3 ------------------------------------------------------------ consensus_11810#2 ------------------------------------------------------------ consensus_11810#1 TGGAAATTTGGATCTCACATAGCTCTAAGCAGAAGGGGGGATAAGGAATTGCAGGGGTTT 705 consensus_11810#0 CCGCCCTCCTTCGGAACTTTGCCNNNTTAAACCNCCCCCGGGAGGGGTGTTTTGGCCCCC 766 consensus_11810#3 ------------------------------------------------------------ consensus_11810#2 ------------------------------------------------------------ consensus_11810#1 TTCTACTCCTTCAGTCCAGTCA-------------------------------------- 727 consensus_11810#0 CCCCCCCNA 775 consensus_11810#3 --------- consensus_11810#2 --------- consensus_11810#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||