These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2758 fasta sequence [TCCAGCAGTCAACGATCAAGTGTCCTTTGAGCAGGAGCACGCTGAAGAAGAACGGCGGTTTAATAAATTTAGATGTTTAATTGAACAAATCCAAATAACAGGAGCCAGATCAACAGCAGTGGATTTTTACTCTGAGCTATGTTCACAAGCTGATCAGATAATGGAGAAAATCGAGAGGCACTTCAAAAATGAGGAAACAAAGGTACTTCCTCAAGCTAGGATTCATTTTTCATCAGAGAAACAAAGGGAACTTTTATATAAGAGTCTCTGTGTCATACCGTTGAAGTTATTGGAGCGTGTTTTACCGTGGTTTGTATCGAAGCTGAATGATCAGGATGCAGAAGCTTTTCTTCAGAATATGTTTTTGGCAGCACCTTCCTCTGAAGCTGCATTGGTCACTCTTCTCTCTGGTTGGGCATGCAAAGGTCGCTCAAAGGGCACCTCTAACTCTGGAAAATTCATATGCTTGACACCAAGGGCACTGAGCAGCCCATTGGATGAAAATGGGTTTAAAGACTGCCAGTTATGTCCATGTTCTTTACAATCAGATATTTGTTCTAGGCCAGCCAAGAAATGGAATGACACAGAATCTAGTAACATAAGCAACTGCTCACAAACGGCTGATATAGCATTGACATGTAAAAACAGACCTTGTCACATTCCTGGGTTAAGGGTAGAAATTAGCAATCTTGCTGTCAATTCGTTTGCTTCTGCAGAGTCCTTCCGATCGCTGTCTCTCAATTATTCTGCTCCTTCATTGTATTCAAGTCTTTTTTCATGGGAGACAGATGCAGCCTTTTCTGGCCCAGATAACATTTCAAGGCCAATTGACACAATATTCAAATTTCATAAGGCAATTCGCAAAGATTTGGAGTTCTTAGATGTGGAATCTAGAAAGCTCATAGATGGGGATGAATCTTCCCTTCGCCAATTCATCGGAAGGTTTCGTTTACTGTGGGGTCTTTATAGAGCACACAGCAATGCTGAAGATGAAATTGTATTTCCTGCTCTTGAATCGAAAGAGACACTGCACAATGTCAGCCACTCATATACTCTTGACCACAAGCAGGAAGAAGAATTATTTAAAGATATATCCACTATTCTTTTTGAGCTTTCACAATTGCATGCTGATTTGAAGCATCCTCTTGGTGGTGCTGATGCAGTTGGAGCGAACCACATTCATCCATATAATAGGATCGATTGGTCCAAAAAGAATAATGAACTTTTGACAAAGCTTCAAGGAATGTGCAAGTCTATCCGGGTTACTCTGTCTAATCATGTCCATAGAGAAGAACTTGAATTGTGGCCACTATTTGATAAACATTTTTCTGTAGAGGAGCAGGATAAGATTGTAGGCCGTATAATTGGAAGTACAGGAGCTGAGGTTCTGCAGTCAATGTTACCCTGGGTTACATCAGCGCTTAGTCTAGATGAACAGAACAATATGCTGGACACATGGAGGCAAGTAACTAAGAATACAATGTTTGATGAATGGCTAAATGAATGGTGGAAGAGATCACCTACTTCTTCTGGCCCTTCAAGCGATGCCTCCCATCCAGAAGAAGATCATTTCCAGGAAAAGTTCGATCAGAGTGAACAGATGTTTAAGCCTGGTTGGAAGGACATCTTCCGAATGAACCAGAGTGAGCTTGAGGCTGAGATACGAAAGGTTTCTCGTGATTCTACTCTTGACCCAAGGAGGAAGGCTTATCTAATCCAAAATCTCATGACCAGCCGCTGGATAGCTGCTCAGCAGAAATCGCCCCAACCTCAGTCAGAAGATCGCAATGGATGTACAGTATTACCTGGATGTTGTCCTTCATACCGAGATCCAGAGAATCAGATTTTTGGCTGTGAGCATTACAAAAGGAAATGCAAACTTGTTGCTGCATGCTGCAATAAACTGTTCACATGCAGGTTTTGTCATGATAAAGTTAGTGACCATACAATGGAAAGGAAAGCAACGGTGGAAATGATGTGCATGCAATGCCTGAAAGTTCAACCAGTTGGTCCAAATTGCCAGACCCCTTCTTGCAATGGGCTATCCATGGCAAAGTATTATTGCAGCGTATGCAAGTTTTTTGACGATGAAAGGAGTGTGTACCATTGCCCCTTTTGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTTCCATTGCATGAAGTGCAACTGTTG-CCT-GGGCATGAAATTGATAGAGCATAAATGTCGAGAAAAGATG-CTAGAGATGAATTGCCCAATCTGCTGCGACTT-CCTATTTACATCGAGTGCAGCAGTTAAAGGTCTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCGTACACCTGTAGTCACTACA-CCTGCCCAATCTGCTCTAAATCCTT-GGGAGATAT-GACAGTATACTTTGGCATGC-TTGATGGCTTGCT-GGCCGCAGAAGAGCTT-CCTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTCTCGGTTCCATTGGCTGTATCACAAATGCGGCTTCTGCGGTTCATATAACACTAGAGTTATCAAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCAGGCGAGATTTTCCCTCTCATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGAAATCCATGCGTCATGCGTGCTCTTGTGTGTTGCTGCGATTAAAAAGTCATAGGAGATGCTAATGGTGGGCGCTTAAAAAAAAAA] [+] EMBL AK068028 [TCCAGCAGTCAACGATCAAGTGTCCTTTGAGCAGGAGCACGCTGAAGAAGAACGGCGGTTTAATAAATTTAGATGTTTAATTGAACAAATCCAAATAACAGGAGCCAGATCAACAGCAGTGGATTTTTACTCTGAGCTATGTTCACAAGCTGATCAGATAATGGAGAAAATCGAGAGGCACTTCAAAAATGAGGAAACAAAGGTACTTCCTCAAGCTAGGATTCATTTTTCATCAGAGAAACAAAGGGAACTTTTATATAAGAGTCTCTGTGTCATACCGTTGAAGTTATTGGAGCGTGTTTTACCGTGGTTTGTATCGAAGCTGAATGATCAGGATGCAGAAGCTTTTCTTCAGAATATGTTTTTGGCAGCACCTTCCTCTGAAGCTGCATTGGTCACTCTTCTCTCTGGTTGGGCATGCAAAGGTCGCTCAAAGGGCACCTCTAACTCTGGAAAATTCATATGCTTGACACCAAGGGCACTGAGCAGCCCATTGGATGAAAATGGGTTTAAAGACTGCCAGTTATGTCCATGTTCTTTACAATCAGATATTTGTTCTAGGCCAGCCAAGAAATGGAATGACACAGAATCTAGTAACATAAGCAACTGCTCACAAACGGCTGATATAGCATTGACATGTAAAAACAGACCTTGTCACATTCCTGGGTTAAGGGTAGAAATTAGCAATCTTGCTGTCAATTCGTTTGCTTCTGCAGAGTCCTTCCGATCGCTGTCTCTCAATTATTCTGCTCCTTCATTGTATTCAAGTCTTTTTTCATGGGAGACAGATGCAGCCTTTTCTGGCCCAGATAACATTTCAAGGCCAATTGACACAATATTCAAATTTCATAAGGCAATTCGCAAAGATTTGGAGTTCTTAGATGTGGAATCTAGAAAGCTCATAGATGGGGATGAATCTTCCCTTCGCCAATTCATCGGAAGGTTTCGTTTACTGTGGGGTCTTTATAGAGCACACAGCAATGCTGAAGATGAAATTGTATTTCCTGCTCTTGAATCGAAAGAGACACTGCACAATGTCAGCCACTCATATACTCTTGACCACAAGCAGGAAGAAGAATTATTTAAAGATATATCCACTATTCTTTTTGAGCTTTCACAATTGCATGCTGATTTGAAGCATCCTCTTGGTGGTGCTGATGCAGTTGGAGCGAACCACATTCATCCATATAATAGGATCGATTGGTCCAAAAAGAATAATGAACTTTTGACAAAGCTTCAAGGAATGTGCAAGTCTATCCGGGTTACTCTGTCTAATCATGTCCATAGAGAAGAACTTGAATTGTGGCCACTATTTGATAAACATTTTTCTGTAGAGGAGCAGGATAAGATTGTAGGCCGTATAATTGGAAGTACAGGAGCTGAGGTTCTGCAGTCAATGTTACCCTGGGTTACATCAGCGCTTAGTCTAGATGAACAGAACAATATGCTGGACACATGGAGGCAAGTAACTAAGAATACAATGTTTGATGAATGGCTAAATGAATGGTGGAAGAGATCACCTACTTCTTCTGGCCCTTCAAGCGATGCCTCCCATCCAGAAGAAGATCATTTCCAGGAAAAGTTCGATCAGAGTGAACAGATGTTTAAGCCTGGTTGGAAGGACATCTTCCGAATGAACCAGAGTGAGCTTGAGGCTGAGATACGAAAGGTTTCTCGTGATTCTACTCTTGACCCAAGGAGGAAGGCTTATCTAATCCAAAATCTCATGACCAGCCGCTGGATAGCTGCTCAGCAGAAATCGCCCCAACCTCAGTCAGAAGATCGCAATGGATGTACAGTATTACCTGGATGTTGTCCTTCATACCGGGATCCAGAGAATCAGATTTTTGGCTGTGAGCATTACAAAAGGAAATGCAAACTTGTTGCTGCATGCTGCAATAAACTGTTCACATGCAGGTTTTGTCATGATAAAGTTAGTGACCATACAATGGAAAGGAAAGCAACGGTGGAAATGATGTGCATGCAATGCCTGAAAGTTCAACCAGTTGGTCCAAATTGCCAGACCCCTTCTTGCAATGGGCTATCCATGGCAAAGTATTATTGCAGCGTATGCAAGTTTTTTGACGATGAAAGGAGTGTGTACCATTGCCCCTTTTGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTTCCATTGCATGAAGTGCAACTGTTG CCT GGGCATGAAATTGATAGAGCATAAATGTCGAGAAAAGATG CTAGAGATGAATTGCCCAATCTGCTGCGACTT CCTATTTACATCGAGTGCAGCAGTTAAAGGTCTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCGTACACCTGTAGTCACTACA CCTGCCCAATCTGCTCTAAATCCTT GGGAGATAT GACAGTATACTTTGGCATGC TTGATGGCTTGCT GGCCGCAGAAGAGCTT CCTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTCTCGGTTCCATTGGCTGTATCACAAATGCGGCTTCTGCGGTTCATATAACACTAGAGTTATCAAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCAGGCGAGATTTTCCCTCTCATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGA ] [+] EMBL CA766179 [ TAAAGATATATCCACTATTCTTTTTGAGCTTT ACAATTGCATGCTGATTTGAAGCATCCTCTTGGTGGTGCTGATGCAGTTGGAGCGAACCACATTCATCCATATAATAGGATCGATTGGTCCAAAAAGAATAATGAACTTTTGACAAAGCTTCAAGGAATGTGCAAGTCTATCCGGGTTACTCTGTCTAATCATGTCCATAGAGAAGAACTTGAATTGTGGCCACTATTTGATAAACATTTTTCTGTAGAGGAGCAGGATAAGATTGTAGGCCGTATAATTGGAAGTACAGGAGCTGAGGTTCTGCAGTCAATGTTACCCTGGGTTACATCAGCACTTAGTCTAGATGAACAGAACAATATGCTGGACACATGGAGGCAAGTAACTAAGAATACAATGTTTGATGAATGGCTAAATGAATGGTGGAAGAGATCACCTACTTCTTCTGGCCCTTCAAGCGATGCCTCCCATCCAGAAGAAGATCATTTCCAGGAAAAGTTCGATCAGAGTGAACAGATGTTTAAGCCTGGTTGGAAGGACATCTTCCGAATGAACCAGAGTGAGCTTGAGGCTGAGATACGAAAGGTTTCTCGTGATTCTACTCTTGACCCAAGGAGGAAGGCTTATCTAATCCAAAATCTCATGACCAGCCGCTGGATAGCTGCTCAGCAGAAATCGCCCCAACCTCAGTCAGAAGATCGCAATGGATGTACAGTATTACCTGGATGNTGGCCTTCATACCGAGATCCAGAGAATCAGATTTTTGGCTGNGAGCATTACAAAA ] [+] EMBL AY224508 [ GGAAGAGATCACCTACTTCTTCTGGCCCTTCAAGCGATGCCTCCCATCCAGAAG GATCATTTCCAGGAAAAGTTCGATCAGAGTGAACAGATGTTTAAGCCTGGTTGGAAGGACATCTTCCGAATGAACCAGAGTGAGCTTGAGGCTGAGATACGAAAGGTTTCTCGTGATTCTACTCTTGACCCAAGGAGGAAGGCTTATCTAATCCAAAATCTCATGACCAGCCGCTGGATAGCTGCTCAGCAGAAATCGCCCCAACCTCAGTCAGAAGATCGCAATGGATGTACAGTATTACCTGGATGTTGTCCTTCATACCGAGATCCAGAGAATCAGATTTTTGGCTGTGAGCATTACAAAAGGAAATGCAAACTTGTTGCTGCATGCTGCAATAAACTGTTCACATGCAGGTTTTGTCATGATAAAGTTAGTGACCATACAATGGAAAGGAAAGCAACGGTGGAAATGATGTGCATGCAATGCCTGAAAGTTCAACCAGTTGGTCCAAATTGCCAGACCCCTTCTTGCAATGGGCTATCCATGGCAAAGTATTATTGCAGCGTATGCAAGTTTTTTGACGATGAAAGGAGTGTGTACCATTGCCCCTTTGGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTTCCATTGCATGAAGTGCAACTGTTG CCT GGGCATGAAATTGATAGAGCATAAATGTCGAGAAAAGATG CTAGAGATGAATTGCCCAATCTGCTGCGACTT CCTATTTACATCGAGTGCAGCAGTTAAAGGTCTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCGTACACCTGTAGTCACTACA CCTGCCCAATCTGCTCTAAATCCTT GGGAGATAT GACA TATACTTTGGCATGC TTGATGGCTTGCT GGCCGCAGAAGAGCTT CCTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTCTCGGTTCCATTGGCTGTATCACAAATGCGGCTTCTGCGGTTCATATAACACTAGAGTTATCAAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCAGGCGAGATTTTCCCTCTCATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGAAATCCATGCGTCATGCGTGCTCTTGTGTGTTGCTGCGATT ] [-] EMBL CB679735 [ GTCATGATAAAGTTAGTGNCCATACAATGGAAAGGAAAGCAACGGTGGAAATGATGTGCATGCAATGCCTGAAAGTTCAACCAGTTGGTCCAAATTGCCAGACCCCTTCTTGCAATGGGCTATCCATGGCAAAGTATTATTGCAGCGTATGCAAGTTTTTTGACGATGAAAGGAGTGTGTACCATTGCCCCTTTTGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTTCCATTGCATGAAGTGCAACTGTTG CCT GGGCATGAAATTGATAGAGCATAAATGTCGAGAAAAGATG CTAGAGATGAATTGCCCAATTTGCTGCGACTT CCTATTTACATCGAGTGCAGCAGTTAAAGGTTTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCGTACACCTGTAGTCACTACA CCTGCCCAATTTGCTTTAAATCCTT GGGAGATAT GACAGTATACTTTGGCATGC TTGATGGCTTGCT GGCCGCAGAAGAGCTT CCTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTTTCGGTTCCATTGGCTGTATCACAAATGCGGCTTTTGCGGTTCATATAACACTAGAGTTATCAAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCAGGCGAGATTTTCCCTCTCATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGAAATCCATGAAGGATGCGTGCTCTTGTGTGTTGCTGAAAAAAAAA ] [+] EMBL OSR01781A [ AGTGTGTACCATTGCCCCTTTTGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTTCCATTGCATGAAGTGCAACTGTTG CCT GGGCATGAAATTGATAGAGCATAAATGTCGAGAAAAGATG CTAGAGATGAATTGCCCAATCTGCTGCGACTT CCTATTTACATCGAGTGCAGCAGTTAAAGGTCTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCGTACACCTGTAGTCACTACA CCTGCCCAATCTGCTCTAAATCCTT GGGAGATAT GACAGTATACTTTGGCATGC TTGATGGCTTGCT GGCCGCAGAAGAGCTT CCTGAGGGATACCGGGnc ] [+] EMBL AU031648 [ gaAAGTNCAACTGTTGCCCTGGGGCATGAAATTGATGGANCATAAATGTCGAGAAAAGATGNCTAGAGATGAATNCCCCAATCTGCTGCGACTTCCCTATTTACATCGAGTGCAGCAGTTAAAGGTCTACCTTGTGNCCATTTCATGCATTCAGCTTGCTTTCAGGCGTACCCCTGTAGTCACTACACCCTGCCCAATCTGCTCTAAANCCTTGGGGAGATATGGNCAGTATACTTTGGCATGCTTTGATGGCTTGCTGGGCCGCAGAAGAGCTTCCCTGAGGAATCCCGGGACCGGTNCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTCTCGGTTCCATTGGCTGTATCACAAATGCGGCTTCTGCGGTTCATATAACACTAGAGTTATCAAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCAGGCGAGATTTTCCCTCTCATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGAAATCCATGCGTCATGCGTGCTCTTGTGTGTTGCTGCGATTAACAAGTCATAGGAGATGCTAATGGTGGGCGCTTAAAAAAAAAA] consensusID : consensus_11813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [AGAGGNCGAGACAAGAGTGTGTACCATTGCCCCTTTTGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTTCCATTGCATGAAGTGCAACTGTTGCCTGGGCATGAAATTGATAGAGCATAAATGTCGAGAAAAGATGCTAGAGATGAATTGCCCAATTTGCTGCGACTTCCTATTTACATCGAGTGCAGCAGTTAAAGGTTTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGGGTACACCTGTAGTCCCTACACCTGTCCAATTTGCTTTAAATCCTTGGGAGATATGACAGTATACTTTGGCATGCTTGATGGCTTGCTGGCCCCCGAAGAGCTCCCTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAAAAAAGGAAGGTCTCGGTTCCATTGGCTGTATCACAAATGCGGCTTTTGCGGTTCATATAACCCTAGAGTTATCAAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCAGGCGAGATTTTCCCTCTTATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGAAATCCCTGCGTCATGCGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA763132 [AGAGGNCGAGACAAGAGTGTGTACCATTGCCCCTTTTGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTTCCATTGCATGAAGTGCAACTGTTGCCTGGGCATGAAATTGATAGAGCATAAATGTCGAGAAAAGATGCTAGAGATGAATTGCCCAATTTGCTGCGACTTCCTATTTACATCGAGTGCAGCAGTTAAAGGTTTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGGGTACACCTGTAGTCCCTACACCTGTCCAATTTGCTTTAAATCCTTGGGAGATATGACAGTATACTTTGGCATGCTTGATGGCTTGCTGGCCCCCGAAGAGCTCCCTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAAAAAAGGAAGGTCTCGGTTCCATTGGCTGTATCACAAATGCGGCTTTTGCGGTTCATATAACCCTAGAGTTATCAAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCAGGCGAGATTTTCCCTCTTATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGAAATCCCTGCGTCATGCGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11813#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CGACATCATCTGATTCTTCAGAAGAGGCATCCTCTGCTCCAGAAGATAGTCATTTACAGGACAAGATTGACCAGAATGATCAGATGTTCAAGCCTGGATGGAAGGACATATTTCGAATGAACCAGAGTGAACTTGAGGCTGAGGTGCGAAAGGTTTCACGAGATCCTACACTTGACCCAAGGCGGAAGGCCTATCTTATCCAAAATCTCATGACCAGTCGCTGGATAGCTGCTCAGCAGAAGCTACCAGAGCCAAAATCAGAAGAGTGTAGTGAAGGTGCCGGTATCCCTGGATGTGCTCCTTCATATCGAGACCAGGAGAAGCAAATATTTGGTTGTGAGCACTACAAAAGGAACTGCAAGCTTGTTGCTGCATGCTGCAACAAGCTGTTCACTTGCAGATTCTGCCATGATAAAATTAGTGATCATACGATGGAAAGGAAAGCGACACAGGAGATGATGTGCATGGTATGCTTAAAAGTTCAACCTGTTGGTCCAAATTGTCAAACTCCGTCTTGCAATGGGCTATCCATGGCAAAGTATTACTGTAACATCTGCAAATTTTTTGATGATGAAAGGACTGTTTATCATTGCCCATTTTGTAATTTGTGC] [+] EMBL CF316433 [CGACATCATCTGATTCTTCAGAAGAGGCATCCTCTGCTCCAGAAGATAGTCATTTACAGGACAAGATTGACCAGAATGATCAGATGTTCAAGCCTGGATGGAAGGACATATTTCGAATGAACCAGAGTGAACTTGAGGCTGAGGTGCGAAAGGTTTCACGAGATCCTACACTTGACCCAAGGCGGAAGGCCTATCTTATCCAAAATCTCATGACCAGTCGCTGGATAGCTGCTCAGCAGAAGCTACCAGAGCCAAAATCAGAAGAGTGTAGTGAAGGTGCCGGTATCCCTGGATGTGCTCCTTCATATCGAGACCAGGAGAAGCAAATATTTGGTTGTGAGCACTACAAAAGGAACTGCAAGCTTGTTGCTGCATGCTGCAACAAGCTGTTCACTTGCAGATTCTGCCATGATAAAATTAGTGATCATACGATGGAAAGGAAAGCGACACAGGAGATGATGTGCATGGTATGCTTAAAAGTTCAACCTGTTGGTCCAAATTGTCAAACTCCGTCTTGCAATGGGCTATCCATGGCAAAGTATTACTGTAACATCTGCAAATTTTTTGATGATGAAAGGACTGTTTATCATTGCCCATTTTGTAATTTGTGC] consensusID : consensus_11813#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [TGCGACTTCCTATTTACACTCGAGTCCACCAGTTAAAGGTCTACCTTGTGCCCTTTCATNGCATTCAGCTTGCTTTCAGGCGTACACCTGTAGTCACTACACCTGTCCNATCTGCTCTAAATCCCTTGGGAGATATGACAGTATACTTTGGCATGCTTGATGGCTTGCTGGCCGCCGAAGAGCTTCCTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTCTCGGTTCCCTTGGCTGTATCACCAATGCGGCTTCTGCGGTTCATATAACACCTAGAGTTATCCCAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCACGGCGAGATTTTCCCTCTCATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGAAATCCATGCGTCATGCGTGCTCTTGTGTGTTAAAAAAAAAA] [+] EMBL BM420331 [TGCGACTTCCTATTTACACTCGAGTCCACCAGTTAAAGGTCTACCTTGTGCCCTTTCATNGCATTCAGCTTGCTTTCAGGCGTACACCTGTAGTCACTACACCTGTCCNATCTGCTCTAAATCCCTTGGGAGATATGACAGTATACTTTGGCATGCTTGATGGCTTGCTGGCCGCCGAAGAGCTTCCTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTCTCGGTTCCCTTGGCTGTATCACCAATGCGGCTTCTGCGGTTCATATAACACCTAGAGTTATCCCAGATTGATAGAGCTGATTGTTCAACATCAGATTAACCACGGCGAGATTTTCCCTCTCATATTCGAAATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACTTAAAGAAATCCATGCGTCATGCGTGCTCTTGTGTGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TCCAGCAGTCAACGATCAAGTGTCCTTTGAGCAGGAGCACGCTGAAGAAGAACGGCGGTT 60 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TAATAAATTTAGATGTTTAATTGAACAAATCCAAATAACAGGAGCCAGATCAACAGCAGT 120 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 GGATTTTTACTCTGAGCTATGTTCACAAGCTGATCAGATAATGGAGAAAATCGAGAGGCA 180 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 CTTCAAAAATGAGGAAACAAAGGTACTTCCTCAAGCTAGGATTCATTTTTCATCAGAGAA 240 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 ACAAAGGGAACTTTTATATAAGAGTCTCTGTGTCATACCGTTGAAGTTATTGGAGCGTGT 300 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TTTACCGTGGTTTGTATCGAAGCTGAATGATCAGGATGCAGAAGCTTTTCTTCAGAATAT 360 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 GTTTTTGGCAGCACCTTCCTCTGAAGCTGCATTGGTCACTCTTCTCTCTGGTTGGGCATG 420 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 CAAAGGTCGCTCAAAGGGCACCTCTAACTCTGGAAAATTCATATGCTTGACACCAAGGGC 480 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 ACTGAGCAGCCCATTGGATGAAAATGGGTTTAAAGACTGCCAGTTATGTCCATGTTCTTT 540 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 ACAATCAGATATTTGTTCTAGGCCAGCCAAGAAATGGAATGACACAGAATCTAGTAACAT 600 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 AAGCAACTGCTCACAAACGGCTGATATAGCATTGACATGTAAAAACAGACCTTGTCACAT 660 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TCCTGGGTTAAGGGTAGAAATTAGCAATCTTGCTGTCAATTCGTTTGCTTCTGCAGAGTC 720 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 CTTCCGATCGCTGTCTCTCAATTATTCTGCTCCTTCATTGTATTCAAGTCTTTTTTCATG 780 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 GGAGACAGATGCAGCCTTTTCTGGCCCAGATAACATTTCAAGGCCAATTGACACAATATT 840 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 CAAATTTCATAAGGCAATTCGCAAAGATTTGGAGTTCTTAGATGTGGAATCTAGAAAGCT 900 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 CATAGATGGGGATGAATCTTCCCTTCGCCAATTCATCGGAAGGTTTCGTTTACTGTGGGG 960 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TCTTTATAGAGCACACAGCAATGCTGAAGATGAAATTGTATTTCCTGCTCTTGAATCGAA 1020 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 AGAGACACTGCACAATGTCAGCCACTCATATACTCTTGACCACAAGCAGGAAGAAGAATT 1080 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 ATTTAAAGATATATCCACTATTCTTTTTGAGCTTTCACAATTGCATGCTGATTTGAAGCA 1140 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TCCTCTTGGTGGTGCTGATGCAGTTGGAGCGAACCACATTCATCCATATAATAGGATCGA 1200 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TTGGTCCAAAAAGAATAATGAACTTTTGACAAAGCTTCAAGGAATGTGCAAGTCTATCCG 1260 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 GGTTACTCTGTCTAATCATGTCCATAGAGAAGAACTTGAATTGTGGCCACTATTTGATAA 1320 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 ACATTTTTCTGTAGAGGAGCAGGATAAGATTGTAGGCCGTATAATTGGAAGTACAGGAGC 1380 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TGAGGTTCTGCAGTCAATGTTACCCTGGGTTACATCAGCGCTTAGTCTAGATGAACAGAA 1440 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 CAATATGCTGGACACATGGAGGCAAGTAACTAAGAATACAATGTTTGATGAATGGCTAAA 1500 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TGAATGGTGGAAGAGATCACCTACTTCTTCTGGCCCTTCAAGCGATGCCTCCCATCCAGA 1560 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 AGAAGATCATTTCCAGGAAAAGTTCGATCAGAGTGAACAGATGTTTAAGCCTGGTTGGAA 1620 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 GGACATCTTCCGAATGAACCAGAGTGAGCTTGAGGCTGAGATACGAAAGGTTTCTCGTGA 1680 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TTCTACTCTTGACCCAAGGAGGAAGGCTTATCTAATCCAAAATCTCATGACCAGCCGCTG 1740 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 GATAGCTGCTCAGCAGAAATCGCCCCAACCTCAGTCAGAAGATCGCAATGGATGTACAGT 1800 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 ATTACCTGGATGTTGTCCTTCATACCGAGATCCAGAGAATCAGATTTTTGGCTGTGAGCA 1860 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TTACAAAAGGAAATGCAAACTTGTTGCTGCATGCTGCAATAAACTGTTCACATGCAGGTT 1920 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 TTGTCATGATAAAGTTAGTGACCATACAATGGAAAGGAAAGCAACGGTGGAAATGATGTG 1980 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ------------------------------------------------------------ consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 CATGCAATGCCTGAAAGTTCAACCAGTTGGTCCAAATTGCCAGACCCCTTCTTGCAATGG 2040 consensus_11813#2 ------------------------------------------------------------ consensus_11813#1 ----------------------------------------AGAGGNCGAGACAAGAGTGT 20 consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 GCTATCCATGGCAAAGTATTATTGCAGCGTATGCAAGTTTTTTGACGATGAAAGGAGTGT 2100 consensus_11813#2 ----------------------------------------------------------CG 2 consensus_11813#1 GTACCATTGCCCCTTTTGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTT 80 consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 GTACCATTGCCCCTTTTGCAATTTGTGTCGTCTTGGGCAAGGATTGGGTATTGATTTTTT 2160 consensus_11813#2 ACATCATCTGATTCTTCAGAAGAGGCATCCTCTGCTCCAGAAGATAGTCATTTACAGGAC 62 consensus_11813#1 CCATTGCATGAAGTGCAACTGTTGCCTGGGCATGAA---ATTGATAGAGCATAAATGTCG 137 consensus_11813#3 ------------------------------------------------------------ consensus_11813#0 CCATTGCATGAAGTGCAACTGTTGCCTGGGCATGAA---ATTGATAGAGCATAAATGTCG 2217 consensus_11813#2 AAGATTGACCAGAATGATCAGATGTTCAAGCCTGGATGGAAGGACATATTTCGAATGAAC 122 consensus_11813#1 AGAAAAGATGCTAGAGATGAATTGCCCAATTTGCTGCGACTTCCTATTTACA-TCGAGTG 196 consensus_11813#3 ----------------------------------TGCGACTTCCTATTTACACTCGAGTC 26 consensus_11813#0 AGAAAAGATGCTAGAGATGAATTGCCCAATCTGCTGCGACTTCCTATTTACA-TCGAGTG 2276 consensus_11813#2 CAGAGTGAACTTGAGGCTGAGGTGCGAAAGGTTTCACGAGATCC----TACACTTGACCC 178 *** *** **** * ** consensus_11813#1 CAGCAGTTAAAGGTTTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGGGTACA 256 consensus_11813#3 CACCAGTTAAAGGTCTACCTTGTGCCCTTTCATNGCATTCAGCTTGCTTTCAGGCGTACA 86 consensus_11813#0 CAGCAGTTAAAGGTCTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCGTACA 2336 consensus_11813#2 AAG--GCGGAAGGCCTATCTTAT-CCAAAATCTCATGACCAGTCGCTGGATAGCTGCTCA 235 * * **** ** *** * * *** ** * ** consensus_11813#1 CCTGTAGTCCCTACACCTGTCCAATTTGCTTTAAATCC-TTGGGAGATATGACAGTATAC 315 consensus_11813#3 CCTGTAGTCACTACACCTGTCCNATCTGCTCTAAATCCCTTGGGAGATATGACAGTATAC 146 consensus_11813#0 CCTGTAGTCACTACACCTGCCCAATCTGCTCTAAATCC-TTGGGAGATATGACAGTATAC 2395 consensus_11813#2 GCAGAAGCTACCAGAGCCAA--AATCAG----AAGAGT-GTAGTGAAGGTGCCGGTATCC 288 * * ** * * * * ** * ** * * * ** * **** * consensus_11813#1 TTTGGCATGCTTGATGGCTTGCTGGCCCCCGAAGA-----GCTCCCTGAGGAATACCGGG 370 consensus_11813#3 TTTGGCATGCTTGATGGCTTGCTGGCCGCCGAAGA-----GCTTCCTGAGGAATACCGGG 201 consensus_11813#0 TTTGGCATGCTTGATGGCTTGCTGGCCGCAGAAGA-----GCTTCCTGAGGAATACCGGG 2450 consensus_11813#2 CTGGATGTGCTCCTTCATATCGAGACCAGGAGAAGCAAATATTTGGTTGTGAGCACTACA 348 * * **** * * * ** * * * ** ** consensus_11813#1 ACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAAAAAAGGAAGGTCTCGGTTC--CA 428 consensus_11813#3 ACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTCTCGGTTC--CC 259 consensus_11813#0 ACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGAAAAGGAAGGTCTCGGTTC--CA 2508 consensus_11813#2 AAAGGAACTGCAAGCTTGTTGCTGCATGCTGCAACAAGCTGTTCACTTGCAGATTCTGCC 408 * ** * * * ** * ** * * * * * *** * consensus_11813#1 TTGGCTGTATCACAAATGCGGCTTTTGCGGTTCATATAAC-CCTAGAGTTATCA-AGATT 486 consensus_11813#3 TTGGCTGTATCACCAATGCGGCTTCTGCGGTTCATATAACACCTAGAGTTATCCCAGATT 319 consensus_11813#0 TTGGCTGTATCACAAATGCGGCTTCTGCGGTTCATATAAC-ACTAGAGTTATCA-AGATT 2566 consensus_11813#2 ATGATAAAATTAGTGATCATACGATGGAAAGGAAAGCGACACAGGAGATGATGT--GCAT 466 ** ** * ** * * * ** * ** * * consensus_11813#1 GATAGAGCTGATTGTTCAACATCAGATTAACCA-GGCGAGATTTTCCCTCTTATATTCGA 545 consensus_11813#3 GATAGAGCTGATTGTTCAACATCAGATTAACCACGGCGAGATTTTCCCTCTCATATTCGA 379 consensus_11813#0 GATAGAGCTGATTGTTCAACATCAGATTAACCA-GGCGAGATTTTCCCTCTCATATTCGA 2625 consensus_11813#2 GGTATGCTTAAAAGTTCAACCT--GTTGGTCCAAATTGTCAAACTCCGTCTTGCAATGGG 524 * ** * * ******* * * * *** * * *** *** * * * consensus_11813#1 AATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACT--TAAAGAAATCCCTGC 603 consensus_11813#3 AATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACT--TAAAGAAATCCATGC 437 consensus_11813#0 AATTCCTTTTGAATATATATATTGTTGTAAATATACATCAACT--TAAAGAAATCCATGC 2683 consensus_11813#2 CTATCCATGGCAAAGTAT-TACTGTAACATCTGCAAATTTTTTGATGATGAAAGGACTGT 583 *** * ** *** ** *** * * * ** * * * **** ** consensus_11813#1 GTCATGCGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 640 consensus_11813#3 GTCATGCGTGCTCTTGTGTGTTAAAAAAAAAA---------------------------- 469 consensus_11813#0 GTCATGCGTGCTCTTGTGTGTTGCTGCGATTAAAAAGTCATAGGAGATGCTAATGGTGGG 2743 consensus_11813#2 TTATCATTGCCCATTTTGTAATTTGTGC-------------------------------- 611 * * consensus_11813#1 --------------- consensus_11813#3 --------------- consensus_11813#0 CGCTTAAAAAAAAAA 2758 consensus_11813#2 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||