These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [TTTTTTTTTTTTTTTTTTTTAGCTAAATGCTTATATTTTGTTACGGATGGAGTATATATTATACATGATTTATTAATATATCAGAACTGGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTTGCCGATCAACCTCACCCATGGTCTTTATACATACTGATGGTAGCTTTTAGGGGACTTTGTTCACTTGAAAGTGTGAATAAAACTAATCTGCAATGGAAACATATAGCGGTAAGACATCTCATTCCTCCTTTTCTTTTTCTTTTGTCTTCTTGGGCAGAAGTGGAACATATCTTTGTAAGTTCTGTTTTTCTTCCATACGAATCAGTTACTTTTCTTAAAACATCACATGAAGTCATCCTAAACTATTTAGAACTGAAATTTTAGCTACCATTGACCTATGCTGTGGCCATTGGACCTTTGGCATGCTATTTTTTGTCCCTTAATTTGGTTTGTCCTCTTAGCTAGAGGCACTATAGCCAGGTTCTCTCTTTAGGAGCACTAATGCATTTTGGGGAAGTAGGGTATCTCTCCTTAGGTGTGCGAATTCAGGCACTAAAAACCATATACTTCTGTTATAGNTTTTTTTCTACAATTGAAATAGTTATTGATAACAGAAATATGCTTAACATGCTACATACATAGTCATAT] [+] EMBL CA761645 [TTTTTTTTTTTTTTTTTTTTAGCTAAATGCTTATATTTTGTTACGGATGGAGTATATATTATACATGATTTATTAATATATCAGAACTGGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTTGCCGATCAACCTCACCCATGGTCTTTATACATACTGATGGTAGCTTTTAGGGGACTTTGTTCACTTGAAAGTGTGAATAAAACTAATCTGCAATGGAAACATATAGCGGTAAGACATCTCATTCCTCCTTTTCTTTTTCTTTTGTCTTCTTGGGCAGAAGTGGAACATATCTTTGTAAGTTCTGTTTTTCTTCCATACGAATCAGTTACTTTTCTTAAAACATCACATGAAGTCATCCTAAACTATTTAGAACTGAAATTTTAGCTACCATTGACCTATGCTGTGGCCATTGGACCTTTGGCATGCTATTTTTTGTCCCTTAATTTGGTTTGTCCTCTTAGCTAGAGGCACTATAGCCAGGTTCTCTCTTTAGGAGCACTAATGCATTTTGGGGAAGTAGGGTATCTCTCCTTAGGTGTGCGAATTCAGGCACTAAAAACCATATACTTCTGTTATAGNTTTTTTTCTACAATTGAAATAGTTATTGATAACAGAAATATGCTTAACATGCTACATACATAGTCATAT] consensusID : consensus_11824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 524 fasta sequence [TTTTTTAAGAGAAATATATAGAGTGATCTATACGTTTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCA-TGCAGTAGCTACTACTGTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGA-TGGAGTATATATTATACATGATTTATTAATATATCAGAACT-GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTT-GCCGATCAACCTCACCATTTTGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTTCGCCTTGCCGGTATCCGCCGCCGCCGCCTCCTCCTCGTCG-A-CCTCTTGTGCTGGGGCAGGTAGTCCATGGCGTCTATGTA] [-] EMBL CA765179 [TTTTTTAAGAGAAATATATAGAGTGATCTATACGTTTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCAGTGCAGTAGCTACTACTGTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTA ] [-] EMBL BI804141 [ TTTTTAAGAGAAATATATAGAGTGATCTATACGTTTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCA TGCAGTAGCTACTACTGTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTT GCCGATCAACCTCACCATTTTGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTTCG CTTGCCGGTATCCGCCGCCGCCGCCTCCTCCTCGTCG A CCTCTTGTGCTGGGGCAGGTAGT CATGGCGTCTATGTA] [-] EMBL BI803785 [ TTTTTAAGAGAAATATATAGAGTGATCTATACGTGTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCA TGCAGTAGCTACTACTGTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGAGTGGAGTATATATTATACATGATTTATTAATATATCAGAACTGGGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTG GCCGATCAACCTCACCATTTGGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCG GTCGGCTATGCGGCTGTGGCCGTGCTG GTCTCCTCCTCTTTCCCGTGCTCCTTCGCCTTGCCGGTATCCGCCGACG CG CTCCTCCTCGTCGAA CCTCTTGTGCTGGGGCAGGTAGTCCATGG GTCTATGTA] [-] EMBL BI803838 [ TTTTTAAGAGAAATATATAGAGTGATCTATACGTTTCTTACCACACTG CACTTATTCAAAACACGTACGCC TGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCA TGCAGTAGCTACTAC GTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATA TTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAAC GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTT GCCGATCAACCTCACCA TTTGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGG TGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTTCGCCTTGCCGGTATCCG CG CG CG CTCCTCCTCGTCG A CCTCTTGTGCTGGGGCAGGTAGTCCATGGC TCTATG ] [-] EMBL BI800947 [ tttttttttTAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTTGGCCGATCAACCTCACCA TTTGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTTCGCCTTGCCGGTATCCGCCGCCGCCGCCTCCTCCTCGTCG ACCCTCTTGTGCTGGGGCAG ] [-] EMBL CA765720 [ ttaaAGCTTAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTA ] [+] EMBL OSA298284 [ TAAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTT GCCGATCAACCTCACCATTTTGACCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTT ] [-] EMBL CB096223 [ AAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTATTTTTATCCCCCTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11824#0 TTTTTTTTTTTTTTTTTTTTAGCTAAATGCTTATATTTTGTTACGGATGGAGTATATATT 60 consensus_11824#1 ---------------------------------TTTTTTAAGAGAAATATATAGAGTGAT 27 * **** * ** * * * consensus_11824#0 ATACATGATTTATTAATATATCAGAACTGGTATACGACGCCCTTATTTTTATCCTCCTGG 120 consensus_11824#1 CTATACG-TTTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGG-----CTAG 81 ** * * *** *** * * *** * * ** * ** ** * consensus_11824#0 TCACGATCCTTAAAGGTATCCTCCTTGCCGAT-CAACCTCACCCATGGTCTTTATACATA 179 consensus_11824#1 GAGGGAGCACTGAACACATATGGCGTATGCATGCAGTAGCTACTACTGTCCCAAAATATA 141 ** * * ** ** * * ** ** * * * *** * * *** consensus_11824#0 CTGA-TGGTAGCTTTTAGGGGACTTTGTTCACTTGAAAGTGTGAATAAAACTAATCTGCA 238 consensus_11824#1 GCAACTTTTAGCT---AAATGCTTATATTTTGTTACGGATG-GAGTATATATTATACATG 197 * * ***** * * * * ** ** ** ** ** * * ** consensus_11824#0 ATGGAAACATATAGCGGTAA-GACATCTCATTCCTCCTTTTCTTTTTCTTTTGTCTTCTT 297 consensus_11824#1 ATTTATTAATATATCAGAACTGGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGAT 257 ** * ***** * * * * ** * ** *** * * * *** * consensus_11824#0 GGGCAGAAGTGGAACATATCTTTGTAAGTTCTGTTTTTCTTCCATACGAATCAGTTACTT 357 consensus_11824#1 CCTTAAAGGTATCCTCCTTGCCGATCAACCTCACCATTTTGTC-CACCGCCTTCTCCCCA 316 * * ** * * * ** * * ** * * consensus_11824#0 TTCTTAAAACATCACATGAAGTCATCCTAAACTATTTAGAACTGAA----ATTTTAGCTA 413 consensus_11824#1 GTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCG 376 ** ** * ** *** * ** * **** ** consensus_11824#0 CCATTGACCTATGCTGTGGCCATTGGACCTTTGGCATGCTATTTTTTGTCCCTTAATTTG 473 consensus_11824#1 ACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCG 436 * * ** ** *** ** * * * * * **** * * *** * * consensus_11824#0 -GTTTGTCCTCTTAGCTAG-AGGCACTATAGCCAGGTTCTCTCTTTAGGAGCACTAATGC 531 consensus_11824#1 TGCTCCTTCGCCTTGCCGGTATCCGCCGCCGCC-GCCTCCTCCTCGTCGACCTCTTGTGC 495 * * * * * * ** * * * * *** * ** ** ** * ** *** consensus_11824#0 ATTTTGGGGAAGTAGGGTATCTCTCCTTAGGTGTGCGAATTCAGGCACTAAAAACCATAT 591 consensus_11824#1 ---TGGGGCAGGTAGTCCATGGCGTCT-ATGTA--------------------------- 524 * *** * **** ** * ** * ** consensus_11824#0 ACTTCTGTTATAGNTTTTTTTCTACAATTGAAATAGTTATTGATAACAGAAATATGCTTA 651 consensus_11824#1 ------------------------------------------------------------ consensus_11824#0 ACATGCTACATACATAGTCATAT 674 consensus_11824#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||