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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1037 fasta sequence
[AGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCGCCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGA-CGG-CCG-AGAAGGCCGGCTACATCATCCCT-GTC-GAGATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTC-AAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCT-CAAGAGAAGTTG-CCAGATTTGAACTG-CAAGAGCATTGACTCGG-CCATGAGAATTATAGCGGGCA-CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA-CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC-GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA-CAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAAAAGCATGCCTGTTGTTTGTTTCAAAAAAAAAAAA]
[+] EMBL AU222814 [AGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCGCCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGA CGG CCG AGAAGGCCGGCTACATCATCCCT GTC GAGATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCC ]
[+] EMBL AK065033 [ TTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCGCCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGA CGG CCG AGAAGGCCGGCTACATCATCCCT GTC GAGATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTC AAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCT CAAGAGAAGTTG CCAGATTTGAACTG CAAGAGCATTGACTCGG CCATGAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA CAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTC ]
[+] EMBL AB042934 [ CCTCGTCTCGCCCCGCTCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCGCCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGA CGG CCG AGAAGGCCGGCTACATCATCCCT GTC GAGATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTC AAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCT CAAGAGAAGTTG CCAGATTTGAACTG CAAGAGCATTGACTCGG CCATGAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTG TCCTAGTGCTTGAATC TTTTCCCTCC G ]
[+] EMBL AU088704 [ AAGACCGGCCCGAAGAAGCCCGGCTACATCANCCCTGGTCGGAGATCACCGTTTTCGATGATAAAAG TTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCTCCAAGAGAAGTTG CCAGATTTGAACTG CAAGAGCATTGACTCGG CCATGAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA CAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAATTGCATGCCTGTTGTTTGTTTCAAAAAAAAAAAA]
[+] EMBL BM419417 [ GCCTCAGTCCTTCTCCTC AAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCT CAAGAGAAGTTG CCAGATTTGAACTG CAAGAGCATTGACTCGG CCATGAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA CAAGCTGTAATCATTTACATCC AACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAAAAaaa ]
[+] EMBL AU222815 [ C AAGGCGGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGNAAAAGTAACAGCAGATCAAGTACGTACAATAGCT CAAGAGAAGTTG CCAGATTTGAACAG CAAGAGCATTGACTCGG CCATNAGAATTATAGCGGGCA CTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCA CCTTANTGATGGCCACCTGTAGATTTTACCTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCCAGTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCA CAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAaaaa ]
[+] EMBL BM420567 [ AGAAGTTGCCCAGATTTGAACTGCCAAGAGCATTGACTCGGCCCATGAGAATTATACCGGGCACCTGCTGCTAATATGGGAATCGAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCACCCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCC GTGGTCAGTTTGAGAGCAAACAGACCATCTACTTTTCACCAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTGCACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGTGCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAAAA ]
consensusID : consensus_11834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCTGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCNCACCGTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCTCCTTCCTCCGGCCGANGCNGCCGCNGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGNGCCATGGCGTCACCCAAGCCCGGGGGCAAGCCAAGAAAGTGGTGGGCCTCATAAAGTTGGCGTTGGAGGCGGGAAGGCACGNGGCGTCGCGGTCGGCCCCGNGTTGGTGCAAGGGTGTGACATCATGTCTTCTGAAGGAGACAATGCAAGAGGCCGAGAAGCCGGTACATCATCCTGTCGANTCACCGTGTTCGATGTAAAAGTTACCTTATTTTGAGC]
[+] EMBL OSS13334A [TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCTGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCNCACCGTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCTCCTTCCTCCGGCCGANGCNGCCGCNGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGNGCCATGGCGTCACCCAAGCCCGGGGGCAAGCCAAGAAAGTGGTGGGCCTCATAAAGTTGGCGTTGGAGGCGGGAAGGCACGNGGCGTCGCGGTCGGCCCCGNGTTGGTGCAAGGGTGTGACATCATGTCTTCTGAAGGAGACAATGCAAGAGGCCGAGAAGCCGGTACATCATCCTGTCGANTCACCGTGTTCGATGTAAAAGTTACCTTATTTTGAGC]
consensusID : consensus_11834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCNGNCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCGCTCCTTCCTCCGGCGACGCGCCGCGCTCGCTGCCCCCTCGCGAGGGCGTCGCGNAGGCATGCGCACCAAGCCGGGGAAGCNAGAAGTGTGGGCTATAAGTGCGTGAGGCGGAGCACGCGCGCGCGTCGCCCGGT]
[+] EMBL OSS13382A [TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGCTCCAAGCGCGCNGNCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACCGTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCGCTCCTTCCTCCGGCGACGCGCCGCGCTCGCTGCCCCCTCGCGAGGGCGTCGCGNAGGCATGCGCACCAAGCCGGGGAAGCNAGAAGTGTGGGCTATAAGTGCGTGAGGCGGAGCACGCGCGCGCGTCGCCCGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11834#0 ------------AGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGC 48
consensus_11834#1 TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGC 60
consensus_11834#2 TAGGGAAGGAAGAGCAGAGAGAGCAAAGCTCCCGCCGTTCATCTCCTCGTCTCGCCCCGC 60
************************************************
consensus_11834#0 TCCAAGCGCGCCGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACC 108
consensus_11834#1 TCCAAGCGCGCTGCCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCNCACC 120
consensus_11834#2 TCCAAGCGCGCNGNCATGGCCACCACCTCCTTGTCCCTGCATGGCGTCCCATCCCCCACC 120
*********** * ***************************************** ****
consensus_11834#0 GCCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGCCTCCTTCCTCCGGCCGACGCCG 168
consensus_11834#1 GTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCCCGC-TCCTTCCTCCGGCCGANGCNG 179
consensus_11834#2 GTCACCAAGCTCTCCTCCTCCTTTCTCGGCGCCCC-GC-TCCTTCCTCCGGC-GACGC-G 176
* ********************************* ** ************* ** ** *
consensus_11834#0 CCGCCGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGGGCCATGGCGCCACCCAAG 228
consensus_11834#1 CCGCNGCTCGCTGCCCCCTCGCGGAGGGCGCTCGCCGTCAGNGCCATGGCGTCACCCAAG 239
consensus_11834#2 CCGC-GCTCGCTGCCCCCTCGCGAGGG-----CGTCGCGNAGGC----ATGCGCACCAAG 226
**** ****************** ** ** ** ** * *****
consensus_11834#0 CCCGGGGGCAAGCCCAAGAAAGTGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAG 288
consensus_11834#1 CCCGGGGGCAAGCC-AAGAAAGTGGTGGGCCTCATAAAGTTGGCGTTGGAGGC-GGGAAG 297
consensus_11834#2 CC---GGGGAAGCN---AGAAGTG-TGGGCT--ATAA-----GTGCGTGAGGCGGAGCAC 272
** *** **** ***** ***** **** * * ***** * * *
consensus_11834#0 GCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAGGGTGTGAACATCATGTCC 348
consensus_11834#1 GC-ACGN-GGCGTCGC-GGTCGGCCCCGNG-TTGGTGC-AAGGGTGTGA-CATCATGTC- 350
consensus_11834#2 GC-GCGC--GCGTCGC---CCGGT------------------------------------ 290
** ** *** *** ***
consensus_11834#0 TTCTGCAAGGAGTACAATGCCAAGACGGCCGAGAAGGCCGGCTACATCATCCCTGTCGAG 408
consensus_11834#1 TTCTG-AAGGAG-ACAATGC-AAGA-GGCCGAGAAG-CCGG-TACATCATCC-TGTCGAN 403
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 ATCACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTC 468
consensus_11834#1 -TCACCGTGTTCGATG-TAAAAGTT---ACCTTATTTTGAGC------------------ 440
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 CTTCTCCTCAAGGCAGCAGGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTT 528
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 GGAAAAGTAACAGCAGATCAAGTACGTACAATAGCTCAAGAGAAGTTGCCAGATTTGAAC 588
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 TGCAAGAGCATTGACTCGGCCATGAGAATTATAGCGGGCACTGCTGCTAATATGGGAATC 648
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 GAGGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTG 708
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 GCACCCATGAATCACCTTACTGATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCA 768
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 ATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCCGTGGTCAGTTTGAGAGCAAACAGA 828
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 CCATCTACTTTTCACAAGCTGTAATCATTTACATCCAAACTGTAGATGGTTTTCATGCTG 888
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 CACCTATTTGGTGGAGTTTCCACATTTTTTCTTGTGAAGTCCCTATGATACACCACATGT 948
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 GCACATAGCTCAGCTTGTCAAACCTGAGTAAGATCTTACTGTTCCTGTTGCCCAAAAGCA 1008
consensus_11834#1 ------------------------------------------------------------
consensus_11834#2 ------------------------------------------------------------
consensus_11834#0 TGCCTGTTGTTTGTTTCAAAAAAAAAAAA 1037
consensus_11834#1 -----------------------------
consensus_11834#2 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||