These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1113 fasta sequence [CCAAAGGAACTTGTTTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCCGCCA-T-ATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACGCTG-ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGC-TGGCCGACGTGATGAAGTCGCGCGCGGTGAAGGCCGAAGGCACGAGCATGTCGTCGACGCTCGACACGTGCAAGGGCGCCTACTCGTCGCTGGCCGACGCGCTGCAGAAGGCGCGCGACACGATCAAGAGCGGCGGCAGCCACGACGACCTGATGACCGAGCTGTCGTCCGCCTCCACCTTCTCCACCGACTGCGGGGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTA-CAACGACACGTACTGCATGTACTGCGCACACTCTG-CCTTTTCATGTACGT-ATACGTGT-GTACT-AGC-GTAC-ATGGTG-TCTG-TATGTACACTGG-TCATGGGGAGAATGGGGAGAGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATATATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAAAAAGAAAAAGTGTTGTAGTTGAGTCCGGGATATATTTGTGCATCAGTGCATGGGAGGTTGATCGCCCAGAAAGGTATATATAATGTACTTCCTTATTAAATACAAGTTACTACATAAAAA] [+] EMBL AK069992 [CCAAAGGAACTTGTTTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCCGCCA T ATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACGCTG ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGC TGGCCGACGTGATGAAGTCGCGCGCGGTGAAGGCCGAAGGCACGAGCATGTCGTCGACGCTCGACACGTGCAAGGGCGCCTACTCGTCGCTGGCCGACGCGCTGCAGAAGGCGCGCGACACGATCAAGAGCGGCGGCAGCCACGACGACCTGATGACCGAGCTGTCGTCCGCCTCCACCTTCTCCACCGACTGCGGGGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTA CAACGACACGTACTGCATGTACTGCGCACACTCTG CCTTTTCATGTACGT ATACGTGT GTACT AGC GTAC ATGGTG TCTG TATGTACACTGG TCATGGGGAGAATGGGGAGAGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATATATAGGCGTCTTGGTCTT ] [+] EMBL AU088630 [ TGTTTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCCGCCA T ATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACG TGAACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGC ] [+] EMBL AU094075 [ TTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCCGCCATT ATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACGNTG ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAA ] [-] EMBL C98707 [ TTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATG CGCAN T ATGCCAAGAGGTGCACTACAAGGCGCTGTG GGCACNCTG ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGCTTGCCCGACGTGATGAAGTCGCGCGCGGTGAAAGCC ] [+] EMBL OSR16241A [ ATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCC CAN TNATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACGTTG ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGC TGGNCGACGTGATGAAGTCGCGCGCGGTGAAGGCCGAAGa ] [+] EMBL AU184217 [ TCCNCCTTNTCCACCGACTGCGGGGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTACCACCGACACGTACTGCATGTACTGCGCACACTCTGCCCTTTTCATGTACGTAATACGTGTGGTACTAANCGGTACAATGGTGNTCTGNTATNTNCACTGGNTCATGGGAAAAATGGGGAAAGCATNCAGTGCGTATGTTTTTATCAATATTTCTCGCANCGGCATATATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAAAAA ] [+] EMBL C98705 [ TCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTA CAACGACACGTACTGCATGTACTGCGCACACTCTG CCTTTTCATGTACGT ATACGTGT GTACT AGC GTAC ATGGTG TCTG TATGTACACTGG TCATGGGGAGAATGGGGAGAGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATATATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAGAAAGAAAAAGTGTTGTAGTTGAGTCCGGGATATATTTGTGCATCAGTGCATGGGAGGTTGATCGCCCAGAAAGGTATATATAATGTACTTCCTTATTAAATACAAGTTACTACATAAAAA] consensusID : consensus_11838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [TTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCGCAGTATGCCAAGAGGTATAGCTAATTAAGGATCGACCAGTGAGCACTACTACACACACTACACCGACATAGGTACGCACGACGCATCGAAATTAACCCGCATGCCATTTATATATGCGTGCGTGCATTGGCATGACATATGATGCAGGTGCACTACAAGGCGCTGTNNGGCACGT] [+] EMBL C72619 [TTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCGCAGTATGCCAAGAGGTATAGCTAATTAAGGATCGACCAGTGAGCACTACTACACACACTACACCGACATAGGTACGCACGACGCATCGAAATTAACCCGCATGCCATTTATATATGCGTGCGTGCATTGGCATGACATATGATGCAGGTGCACTACAAGGCGCTGTNNGGCACGT] consensusID : consensus_11838#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [GNTATTTTCTTTTTCGGTAGCTACTTTNTACATCTTTTTAATTTGGNTCACGTATTATCCTTTTCAATTCCACGACCGACGACCAATGTNCCNACACCTCGCCGCCCTGATCCTGTCCGCGGTNGTNTTGGCGGCGTCCACAAGCTCCGGCGTCGTCNATGCCCGTCCTGTCCACACCGGCCCGTACCACGTGGTCATCAGAACCGCCGCCAAGCCCAGCNGTCGCCTGATCGGGCTCGGCGGCAATGNCGCATTATGCNAAGAGGTGCACTACAAGGNGCTGTGCGGCAC] [+] EMBL C93603 [GNTATTTTCTTTTTCGGTAGCTACTTTNTACATCTTTTTAATTTGGNTCACGTATTATCCTTTTCAATTCCACGACCGACGACCAATGTNCCNACACCTCGCCGCCCTGATCCTGTCCGCGGTNGTNTTGGCGGCGTCCACAAGCTCCGGCGTCGTCNATGCCCGTCCTGTCCACACCGGCCCGTACCACGTGGTCATCAGAACCGCCGCCAAGCCCAGCNGTCGCCTGATCGGGCTCGGCGGCAATGNCGCATTATGCNAAGAGGTGCACTACAAGGNGCTGTGCGGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11838#0 CCAAAGGAACTTGTTTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTAT 60 consensus_11838#2 ------------------GNTATTTTCTTTTTCGGTAGCTACTTTNTACATCTTTTTAAT 42 consensus_11838#1 ------------------------------TTCGGTAGCTACTTTCTACATCTCTCTTAT 30 *************** ******* * * ** consensus_11838#0 TTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGC 120 consensus_11838#2 TTGGNTCACGTATTATCCTTTTCAATTCCACGACCGACGACCAATGTNCCNACACCTCGC 102 consensus_11838#1 TTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGC 90 **** ***************** *********************** ** ********* consensus_11838#0 CGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGC 180 consensus_11838#2 CGCCCTGATCCTGTCCGCGGTNGTNTTGGCGGCGTCCACAAGCTCCGGCGTCGTCNATGC 162 consensus_11838#1 CGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGC 150 ****************** ** ** ****************************** **** consensus_11838#0 CCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCG 240 consensus_11838#2 CCGTCCTGTCCACACCGGCCCGTACCACGTGGTCATCAGAACCGCCGCCAAGCCCAGCNG 222 consensus_11838#1 CCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCG 210 ****************************** *************************** * consensus_11838#0 TCGCCTGATCGGGCTCGGCGGCAATGCCGCCATATGCCAAGAGGTGCACTACAAGGCGCT 300 consensus_11838#2 TCGCCTGATCGGGCTCGGCGGCAATGNCGCATTATGCNAAGAGGTGCACTACAAGGNGCT 282 consensus_11838#1 TCGCCTGATCGGGCTCGGCGGCAATGC-GCAGTATGCCAAGAGGTATA--GCTAATTAAG 267 ************************** ** ***** ******* * * * consensus_11838#0 GTGCGGCACGCTGACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGC 360 consensus_11838#2 GTGCGGCAC--------------------------------------------------- 291 consensus_11838#1 GATCGAC-CAGTGA--GCACTACTACACACACT-ACACCGACATAGGTAC-GCACGACGC 322 * ** * * consensus_11838#0 GTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGCTGGCCGACGTGATGAA 420 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ATCGAAATTAACCCGCATGCCATTTATATATGCGTGCGTGCATTGGCATGACAT-ATGAT 381 consensus_11838#0 GTCGCGCGCGGTGAAGGCCGAAGGCACGAGCATGTCGTCGACGCTCGACACGTGCAAGGG 480 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 G-CAGGTGCACTACAAGGCGCTGTNNGGCACGT--------------------------- 413 consensus_11838#0 CGCCTACTCGTCGCTGGCCGACGCGCTGCAGAAGGCGCGCGACACGATCAAGAGCGGCGG 540 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 CAGCCACGACGACCTGATGACCGAGCTGTCGTCCGCCTCCACCTTCTCCACCGACTGCGG 600 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 GGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGT 660 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 CAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGAT 720 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 GGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGC 780 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 TGCAGGCGAGCGTGCAAGGCTACAACGACACGTACTGCATGTACTGCGCACACTCTGCCT 840 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 TTTCATGTACGTATACGTGTGTACTAGCGTACATGGTGTCTGTATGTACACTGGTCATGG 900 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 GGAGAATGGGGAGAGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATAT 960 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 ATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAAAAAGAAAAAGTGTTGTAGTTGAGTCCG 1020 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 GGATATATTTGTGCATCAGTGCATGGGAGGTTGATCGCCCAGAAAGGTATATATAATGTA 1080 consensus_11838#2 ------------------------------------------------------------ consensus_11838#1 ------------------------------------------------------------ consensus_11838#0 CTTCCTTATTAAATACAAGTTACTACATAAAAA 1113 consensus_11838#2 --------------------------------- consensus_11838#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||