These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [TTTTTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATTCGGGGTAGGCCTTTCTTGGCCTCCTCAAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGT] [+] EMBL CF338011 [TTTTTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATTCGGGGTAGGCCTTTCTTGGCCTCCTCAAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGT] consensusID : consensus_1184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 103 fasta sequence [GGAATAGCTTGGGGTATCTAGCATCAGAATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGTGTGCTCAAGGAGCTCGAGGAGGCC] [+] EMBL BU673738 [GGAATAGCTTGGGGTATCTAGCATCAGAATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGTGTGCTCAAGGAGCTCGAGGAGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1184#0 TTTTTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCG 60 consensus_1184#1 ------------------------------------------------------------ consensus_1184#0 GAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACA 120 consensus_1184#1 ------------------------------------------------------------ consensus_1184#0 TAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAG 180 consensus_1184#1 ------------------------------------------------------------ consensus_1184#0 CCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATC 240 consensus_1184#1 ------------------------------------------------------------ consensus_1184#0 TTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATGAAGCTAATC 300 consensus_1184#1 -------------------------------------------------------GGAAT 5 * consensus_1184#0 AACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATTCGGGGTAGGC 360 consensus_1184#1 AGCTTGGGGTATCTAGCATCA--GAATTGGACCATGTGG---AAGCTGCCCATGTTCGGC 60 * ** * ** * * ** ** ** ** *** * * * *** consensus_1184#0 CTTTCTTGGCCTCCTCAAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGG 420 consensus_1184#1 TGCACCGATGCCACCCAGTGTGCTCAAGGAGCTCGAGGAGGCC----------------- 103 * * * ** * ** ** * ** * * * consensus_1184#0 GCAGCTTCCACATGGTCCAATACCTGCCATCGT 453 consensus_1184#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||