Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11843 cluster # 11843       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11843#0 length = 1891 sequences # 3  
consensus_11843#1 length = 1852 sequences # 2  
consensus_11843#2 length = 1819 sequences # 3  
consensus_11843#3 length = 352 sequences # 1  

consensusID : consensus_11843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1891
fasta sequence
                              [CAGCTCGCTTTGCAATTCCACCAACTAAAATCAAACCACCAAAACACAACACAGGGACGTATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTGGCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTGTTCGTCAAGTCGTTCGTGCAGGCGCAGCATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTGTTTGTCGGCATTGCGGTGGGCGCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTGTTCGGCAAC-TGGCTGCAGGTGGGCAACGACCTGAACCACCGGTTCCTCGCGGCGA-TGTCGGC-ACGGT-ACGGTCCCGTGTTCCGTCTGCGGCTGGGCGTGCGCAACCTGGTGGTGGTGTCGGACCCGAAGCTGGCGACGGAGGTGCTGCACACGCAGGGCGTGGAGTTCGGCTCCCGCCCGCGCAACGTCGTCTTCGACATCTTCACCGCCAACGGCGCCGACATGGTGTTCACCGAGTACGGCGACCACTGGCGACGCATGCGCCGCGTCATGACGCTGCCGTTCTTCACGGCGCGCGTCGTGCAGCAGTACAAGGCCATGTGGGAGGCCGAGATGGACGCCGTCGTGGACGACGTGCGCGGCGACGCGGTGGCGCAGGGCACCGGCTTCGTGGTGCGACGCAGGCTGCAGCTCATGCTGTACAACATCATGTACCGGATGATGTTCGACGCGCGGTTCGAGTCGGTGGACGACCCCATGTTCATCGAGGCCACCAGGTTCAACTCCGAGCGCAGCCGCCTCGCGCAGAGCTTCGAGTACAACTACGGCGACTTCATCCCCATCCTCCGTCCCTTCTTGCGGGGGCTACCTCAACAAGTGCCGTGACCTCCAGAGCAGGAGGCTCGCCTTCTTCAACAACAACTACGTCGAGAAGAGAAGGAAGGTGATGGACACTCCGGGAGACAGGAACAAGCTCCGGTGCGCGATCGACCATATCCTTGAGGCGGAGAAGAACGGCGAGCTGACGGCGGAGAACGTGATCTACATCGTGGAGAACATCAACGTGGCCGCCATCGAGACGACGCTCTGGTCCATCGAGTGGGCGCTGGCCGAGGTCGTCAACCACCCGGCGGTGCAGAGCAAGGTCCGCGCCGAGATCAACGACGTGCTCGGCGACGACGAGCCCATCACCGAGTCCAGCATCCACAAGCTGACTTACCTGCAGGCCGTGATCAAGGAGACGCTGCGGCTGCACTCCCCGATCCCGCTGCTGGTGCCGCACATGAACCTGGAGGAGGCCAAGCTCGGCGGGTACACCATCCCCAAGGGATCCAAGGTGGTGGTGAACGCGTGGTGGCTGGCCAACAACCCGGCGCTGTGGGAGAACCCCGAGGAGTTCCGGCCTGAGCGGTTCTTGGAGAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGCCCTTCGGCGTGGGCCGCCGCAGCTG-CCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCATCGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGACGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTTCCACCCCATCTCTGCCTGAACTCATCGAATCCC-TTGAATCAAGTTCGTGCCATCAGTCGATAAATCCAATTAAAATTTTTGTTTGTTTATAAAATTGCAGAAGAATAGGTTATAAATGACAGCTTACAGCATGTTTTCAGTTTTGTTTCCTAAAGAGTGTAATTTGAAAAGTGAAATGGAATTGTCATCCAACTAGTGTGAGAAAGTGCTC]

[+] EMBL AK072588             [CAGCTCGCTTTGCAATTCCACCAACTAAAATCAAACCACCAAAACACAACACAGGGACGTATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTGGCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTGTTCGTCAAGTCGTTCGTGCAGGCGCAGCATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTGTTTGTCGGCATTGCGGTGGGCGCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTGTTCGGCAAC TGGCTGCAGGTGGGCAACGACCTGAACCACCGGTTCCTCGCGGCGA TGTCGGC ACGGT ACGGTCCCGTGTTCCGTCTGCGGCTGGGCGTGCGCAACCTGGTGGTGGTGTCGGACCCGAAGCTGGCGACGGAGGTGCTGCACACGCAGGGCGTGGAGTTCGGCTCCCGCCCGCGCAACGTCGTCTTCGACATCTTCACCGCCAACGGCGCCGACATGGTGTTCACCGAGTACGGCGACCACTGGCGACGCATGCGCCGCGTCATGACGCTGCCGTTCTTCACGGCGCGCGTCGTGCAGCAGTACAAGGCCATGTGGGAGGCCGAGATGGACGCCGTCGTGGACGACGTGCGCGGCGACGCGGTGGCGCAGGGCACCGGCTTCGTGGTGCGACGCAGGCTGCAGCTCATGCTGTACAACATCATGTACCGGATGATGTTCGACGCGCGGTTCGAGTCGGTGGACGACCCCATGTTCATCGAGGCCACCAGGTTCAACTCCGAGCGCAGCCGCCTCGCGCAGAGCTTCGAGTACAACTACGGCGACTTCATCCCCATCCTCCGTCCCTTCTTGCGGGGGCTACCTCAACAAGTGCCGTGACCTCCAGAGCAGGAGGCTCGCCTTCTTCAACAACAACTACGTCGAGAAGAGAAGGAAGGTGATGGACACTCCGGGAGACAGGAACAAGCTCCGGTGCGCGATCGACCATATCCTTGAGGCGGAGAAGAACGGCGAGCTGACGGCGGAGAACGTGATCTACATCGTGGAGAACATCAACGTGGCCGCCATCGAGACGACGCTCTGGTCCATCGAGTGGGCGCTGGCCGAGGTCGTCAACCACCCGGCGGTGCAGAGCAAGGTCCGCGCCGAGATCAACGACGTGCTCGGCGACGACGAGCCCATCACCGAGTCCAGCATCCACAAGCTGACTTACCTGCAGGCCGTGATCAAGGAGACGCTGCGGCTGCACTCCCCGATCCCGCTGCTGGTGCCGCACATGAACCTGGAGGAGGCCAAGCTCGGCGGGTACACCATCCCCAAGGGATCCAAGGTGGTGGTGAACGCGTGGTGGCTGGCCAACAACCCGGCGCTGTGGGAGAACCCCGAGGAGTTCCGGCCTGAGCGGTTCTTGGAGAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGCCCTTCGGCGTGGGCCGCCGCAGCTG CCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCATCGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGACGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTTCCACCCCATCTCTGCCTGAACTCATCGAATCCC TTGAATCAAGTTCGTGCCATCAGTCGATAAATCCAATTAAAATTTTTGTTTGTTTATAAAATTGCAGAAGAATAGGTTATAAATGACAGCTTACAGCATGTTTTCAGTTTTGTTTCCTAAAGAGTGTAATTTGAAAAGTGAAATGGAATTGTCATCCAACTAGTGTGAGAAAGTGCTC]
[+] EMBL AU093333             [                                                        ACGTATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTGGCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTNTTCGTCAAGTCGTTCGTGCAGGCGCA NATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTNTTTGTCGGCATTGCGGTGGGCGCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTNTTCGGCAACTTGGCTGCAGGTGGGCAACGACCTNAACCACCGGTTCCTCGCGGCGATTNTCGGCAACGGTAACGGTTCCc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU058037             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGNCCTTNGGCGTGGGCCGCCGCAGCTGNCCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCATCGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGACGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTTCCACCCCATCTCTGCCTGAACTCATCGAATCCCTTTGAATCAAGTTCGTGCCATCAGTCGATAAATCCAATTAAAATTTTTGTTTGTTTATAAAATTGCAGAAGAATAGGTTATAAATGACAGCTTACAGCATGTTTTCAGTTTTGTTTCCTAAAGAGTGTAATTTGAAAAGTGAAATGGAATTGTCATCCAACTAaaaaaaaa        ]


>consensus_11843#0 CAGCTCGCTTTGCAATTCCACCAACTAAAATCAAACCACCAAAACACAACACAGGGACGT ATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTG GCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTGTTCGTCAAGTCGTTCGTGCAGGCG CAGCATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTGTTTGTCGGCATTGCGGTGGGC GCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTG TTCGGCAACTGGCTGCAGGTGGGCAACGACCTGAACCACCGGTTCCTCGCGGCGATGTCG GCACGGTACGGTCCCGTGTTCCGTCTGCGGCTGGGCGTGCGCAACCTGGTGGTGGTGTCG GACCCGAAGCTGGCGACGGAGGTGCTGCACACGCAGGGCGTGGAGTTCGGCTCCCGCCCG CGCAACGTCGTCTTCGACATCTTCACCGCCAACGGCGCCGACATGGTGTTCACCGAGTAC GGCGACCACTGGCGACGCATGCGCCGCGTCATGACGCTGCCGTTCTTCACGGCGCGCGTC GTGCAGCAGTACAAGGCCATGTGGGAGGCCGAGATGGACGCCGTCGTGGACGACGTGCGC GGCGACGCGGTGGCGCAGGGCACCGGCTTCGTGGTGCGACGCAGGCTGCAGCTCATGCTG TACAACATCATGTACCGGATGATGTTCGACGCGCGGTTCGAGTCGGTGGACGACCCCATG TTCATCGAGGCCACCAGGTTCAACTCCGAGCGCAGCCGCCTCGCGCAGAGCTTCGAGTAC AACTACGGCGACTTCATCCCCATCCTCCGTCCCTTCTTGCGGGGGCTACCTCAACAAGTG CCGTGACCTCCAGAGCAGGAGGCTCGCCTTCTTCAACAACAACTACGTCGAGAAGAGAAG GAAGGTGATGGACACTCCGGGAGACAGGAACAAGCTCCGGTGCGCGATCGACCATATCCT TGAGGCGGAGAAGAACGGCGAGCTGACGGCGGAGAACGTGATCTACATCGTGGAGAACAT CAACGTGGCCGCCATCGAGACGACGCTCTGGTCCATCGAGTGGGCGCTGGCCGAGGTCGT CAACCACCCGGCGGTGCAGAGCAAGGTCCGCGCCGAGATCAACGACGTGCTCGGCGACGA CGAGCCCATCACCGAGTCCAGCATCCACAAGCTGACTTACCTGCAGGCCGTGATCAAGGA GACGCTGCGGCTGCACTCCCCGATCCCGCTGCTGGTGCCGCACATGAACCTGGAGGAGGC CAAGCTCGGCGGGTACACCATCCCCAAGGGATCCAAGGTGGTGGTGAACGCGTGGTGGCT GGCCAACAACCCGGCGCTGTGGGAGAACCCCGAGGAGTTCCGGCCTGAGCGGTTCTTGGA GAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGCCCTT CGGCGTGGGCCGCCGCAGCTGCCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCAT CGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGA CGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTT CCACCCCATCTCTGCCTGAACTCATCGAATCCCTTGAATCAAGTTCGTGCCATCAGTCGA TAAATCCAATTAAAATTTTTGTTTGTTTATAAAATTGCAGAAGAATAGGTTATAAATGAC AGCTTACAGCATGTTTTCAGTTTTGTTTCCTAAAGAGTGTAATTTGAAAAGTGAAATGGA ATTGTCATCCAACTAGTGTGAGAAAGTGCTC



consensusID : consensus_11843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1852
fasta sequence
                              [TTCCTCGAGCACTGTTGGCCTACTGGAAAAGCAGAGCAGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGACACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTGCAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]

[+] EMBL AK104994             [TTCCTCGAGCACTGTTGGCCTACTGGAAAAGCAGAGCAGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGACACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTGCAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL CA754722             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGACACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTGCAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCANATCAATCATGTGCTGCGTTATCCTATTGCAC                                                                                                                                                                                               ]


>consensus_11843#1 TTCCTCGAGCACTGTTGGCCTACTGGAAAAGCAGAGCAGCGCATCTGCATCCAAAACCAA ACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTC GTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAG CTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAAC TGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTC GGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGAC CTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTG GTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCAC TGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAG AACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCC GCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGAC ATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAG CTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGT GACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTC AAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATG GAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGC GAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAG ACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAG TCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGAC CTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCG ATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATC CCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGG GTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCG CACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATC ATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTG CTGCCGCCGCCCGGGATGGACAAGGTGGACACCACCGAGAAGCCCGGCCAGTTCAGCAAC CAGATCCTCAAGCACGCCACCGTCGTCTGCAAGCCCATCGACGCCTAGGTCGATCGATCG ACCTACTCAAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTT TGTTTGGGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTG TTGTAGGTTTACTTAACTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTA ATCTATACTGCCCAAACATTGCAAAAAAAAAAAAAAAAAAAAAAGGCCACAT



consensusID : consensus_11843#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1819
fasta sequence
                              [AGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGA-CAAGGTGGACA-CC-ACC-GAGAAGCC-C-GG--CCAGTTC-AGCAA--CCAGATCC-TCAAGCAC-GC--CACCGTCG-TCTGCAAGCC-CATCGACGCCTAGGTCGATCGATCGACCTACTC-AAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATATATCATTTCTGGCTATTTACACTTCATCAA]

[+] EMBL AK100598             [AGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGA CAAGGTGGACA CC ACC GAGAAGCC C GG  CCAGTTC AGCAA  CCAGATCC TCAAGCAC GC  CACCGTCG TCTGCAAGCC CATCGACGCCTAGGTCGATCGATCGACCTACTC AAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATATATCATTTCTGGCTATTTACACTTCATCAA]
[+] EMBL BI802565             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GATGGATCAAGGTGGACATCCAACCTGAGAAGCCACAGGCACCAGTTCAAGCAAACCCAGATCCGTCAAGCACAGCCACACCGTCGTTCTGCAAGCCACATCGACGCCTAGGTCGATCGATCGACCTACTCAAAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTT TTTGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACaaaaa                                            ]
[+] EMBL AU097529             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATATATCATTTCTGGCTATTTACACTTCAaaaa]


>consensus_11843#2 AGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGG CGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGG TGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCG CCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACC TGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACC TGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGT TCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGG TGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCT TCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGG TGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGT TGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCG TGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGC AGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCT ACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCG TCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACA TCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGA ACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGC TGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCG GCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGG AGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACG GCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCC TCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGG AGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCG GCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCC GCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGACACCACCG AGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTGCAAGCCCA TCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTTATCCTATT GCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTT CTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTT GGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATATATCATTTCTG GCTATTTACACTTCATCAA



consensusID : consensus_11843#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence
                              [TTTTTCTTTTAAGTGTAAATAGCCAGNAACTGATATATTTGCAATGTCTGGGCAGTATAGATTACCAATACTTAAGTTTGAACCAACAAGTATANGCAAACAAAACAAGATATGCAGACCTACATCAACAGGTGNCTGCCTCACAGNGCATACATACCCCGCCGGTGNGCTCAGGCTCAAGCTCAGCCTCAGCGCTCGNCAAGTACAGTAGACTCCAAGCCCAGTCAATGGNTGCAACCGGGCACACGGCTCACGCGCGNGTACGCTTTCCAATTCGTCACATCTGTCTTCATGCCAGGTACACCACATGAGCTCTTGGCTCGTGGTTCTACTCATGTTGGATAACTGCAAT]

[+] EMBL D43193               [TTTTTCTTTTAAGTGTAAATAGCCAGNAACTGATATATTTGCAATGTCTGGGCAGTATAGATTACCAATACTTAAGTTTGAACCAACAAGTATANGCAAACAAAACAAGATATGCAGACCTACATCAACAGGTGNCTGCCTCACAGNGCATACATACCCCGCCGGTGNGCTCAGGCTCAAGCTCAGCCTCAGCGCTCGNCAAGTACAGTAGACTCCAAGCCCAGTCAATGGNTGCAACCGGGCACACGGCTCACGCGCGNGTACGCTTTCCAATTCGTCACATCTGTCTTCATGCCAGGTACACCACATGAGCTCTTGGCTCGTGGTTCTACTCATGTTGGATAACTGCAAT]


>consensus_11843#3 TTTTTCTTTTAAGTGTAAATAGCCAGNAACTGATATATTTGCAATGTCTGGGCAGTATAG ATTACCAATACTTAAGTTTGAACCAACAAGTATANGCAAACAAAACAAGATATGCAGACC TACATCAACAGGTGNCTGCCTCACAGNGCATACATACCCCGCCGGTGNGCTCAGGCTCAA GCTCAGCCTCAGCGCTCGNCAAGTACAGTAGACTCCAAGCCCAGTCAATGGNTGCAACCG GGCACACGGCTCACGCGCGNGTACGCTTTCCAATTCGTCACATCTGTCTTCATGCCAGGT ACACCACATGAGCTCTTGGCTCGTGGTTCTACTCATGTTGGATAACTGCAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11843#1      -----------------------------------------------TTCCTCGAGCACT 13
consensus_11843#2      ------------------------------------------------------------
consensus_11843#0      CAGCTCGCTTTGCAATTCCACCAACTAAAATCAAACCACCAAAACACAACACAGGGACGT 60
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GTTGGCCTACTGGAAAAGCAGAGCAGCGC-ATCTGCAT--CCAAAACCAAACCCAAACTC 70
consensus_11843#2      ------------------------AGCGC-ATCTGCAT--CCAAAACCAAACCCAAACTC 33
consensus_11843#0      ATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTG 120
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GTCTTCTCCACCGGAGCAGAGC-AGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAG 129
consensus_11843#2      GTCTTCTCCACCGGAGCAGAGC-AGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAG 92
consensus_11843#0      GCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTGTTCGTCAAGTCGTTCGTGCAGGCG 180
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      ----GTCCT--------CCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCC 177
consensus_11843#2      ----GTCCT--------CCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCC 140
consensus_11843#0      CAGCATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTGTTTGTCGGCATTGCGGTGGGC 240
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      AAGCTCACCGGGAA--GAGGCTCCGCC----TCCCGCCCGGCCCCGCCGGCGCGCCCATC 231
consensus_11843#2      AAGCTCACCGGGAA--GAGGCTCCGCC----TCCCGCCCGGCCCCGCCGGCGCGCCCATC 194
consensus_11843#0      GCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTG 300
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCG 291
consensus_11843#2      GTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCG 254
consensus_11843#0      TTCGGCAACTGGCTGCAGGTGGGCAACGACCTGAACCACCGGTTCCTCGCGGCGATGTCG 360
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      CGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCC 351
consensus_11843#2      CGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCC 314
consensus_11843#0      GCACGGTACGGTCCCGTGTTCCGTCTGCGGCTGGGCGTGCGCAACCTGGTGGTGGTGTCG 420
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      AGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACC 411
consensus_11843#2      AGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACC 374
consensus_11843#0      GACCCGAAGCTGGCGACGGAGGTGCTGCACACGCAGGGCGTGGAGTTCGGCTCCCGCCCG 480
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      CGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTAC 471
consensus_11843#2      CGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTAC 434
consensus_11843#0      CGCAACGTCGTCTTCGACATCTTCACCGCCAACGGCGCCGACATGGTGTTCACCGAGTAC 540
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTG 531
consensus_11843#2      GGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTG 494
consensus_11843#0      GGCGACCACTGGCGACGCATGCGCCGCGTCATGACGCTGCCGTTCTTCACGGCGCGCGTC 600
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGC 591
consensus_11843#2      GTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGC 554
consensus_11843#0      GTGCAGCAGTACAAGGCCATGTGGGAGGCCGAGATGGACGCCGTCGTGGACGACGTGCGC 660
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      CGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATG 651
consensus_11843#2      CGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATG 614
consensus_11843#0      GGCGACGCGGTGGCGCAGGGCACCGGCTTCGTGGTGCGACGCAGGCTGCAGCTCATGCTG 720
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      TACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTC 711
consensus_11843#2      TACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTC 674
consensus_11843#0      TACAACATCATGTACCGGATGATGTTCGACGCGCGGTTCGAGTCGGTGGACGACCCCATG 780
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      TTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTAC 771
consensus_11843#2      TTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTAC 734
consensus_11843#0      TTCATCGAGGCCACCAGGTTCAACTCCGAGCGCAGCCGCCTCGCGCAGAGCTTCGAGTAC 840
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      AACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCG-CTACCTCGCACGCTG 830
consensus_11843#2      AACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCG-CTACCTCGCACGCTG 793
consensus_11843#0      AACTACGGCGACTTCATCCCCATCCTCCGTCCCTTCTTGCGGGGGCTACCTCAACAAGTG 900
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      CCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAA 890
consensus_11843#2      CCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAA 853
consensus_11843#0      CCGTGACCTCCAGAGCAGGAGGCTCGCCTTCTTCAACAACAACTACGTCGAGAAGAGAAG 960
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GAGAGTGATGGA-------ACAGACTGG--TGAGATCCGGTGCGCCATGGACCACATCCT 941
consensus_11843#2      GAGAGTGATGGA-------ACAGACTGG--TGAGATCCGGTGCGCCATGGACCACATCCT 904
consensus_11843#0      GAAGGTGATGGACACTCCGGGAGACAGGAACAAGCTCCGGTGCGCGATCGACCATATCCT 1020
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      CGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACAT 1001
consensus_11843#2      CGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACAT 964
consensus_11843#0      TGAGGCGGAGAAGAACGGCGAGCTGACGGCGGAGAACGTGATCTACATCGTGGAGAACAT 1080
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      CAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGT 1061
consensus_11843#2      CAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGT 1024
consensus_11843#0      CAACGTGGCCGCCATCGAGACGACGCTCTGGTCCATCGAGTGGGCGCTGGCCGAGGTCGT 1140
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGC 1121
consensus_11843#2      GAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGC 1084
consensus_11843#0      CAACCACCCGGCGGTGCAGAGCAAGGTCCGCGCCGAGATCAACGACGTGCTCGGCGACGA 1200
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GGCG---GTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGA 1178
consensus_11843#2      GGCG---GTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGA 1141
consensus_11843#0      CGAGCCCATCACCGAGTCCAGCATCCACAAGCTGACTTACCTGCAGGCCGTGATCAAGGA 1260
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      GACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGG 1238
consensus_11843#2      GACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGG 1201
consensus_11843#0      GACGCTGCGGCTGCACTCCCCGATCCCGCTGCTGGTGCCGCACATGAACCTGGAGGAGGC 1320
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      CAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCT 1298
consensus_11843#2      CAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCT 1261
consensus_11843#0      CAAGCTCGGCGGGTACACCATCCCCAAGGGATCCAAGGTGGTGGTGAACGCGTGGTGGCT 1380
consensus_11843#3      ------------------TTTTTCTTTTAAGTGTAAA----TAGCCAGNAACTGATATAT 38
                                           *  *       *  **     * *  *     ** *   *

consensus_11843#1      CGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGA 1358
consensus_11843#2      CGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGA 1321
consensus_11843#0      GGCCAACAACCCGGCGCTGTGGGAGAACCCCGAGGAGTTCCGGCCTGAGCGGTTCTTGGA 1440
consensus_11843#3      TTGCAATGTCTGGGCAGTATAGATTACCAATACTTAAGTTTGAACCAACAAGTATANGCA 98
                          ***   *         * *     *       *  *  *  *  *   **    * *

consensus_11843#1      GGAGGAGAAGGCCGTGGAGGCGCACGGCAACG---------ACTTCCGCTTCGTGCCCTT 1409
consensus_11843#2      GGAGGAGAAGGCCGTGGAGGCGCACGGCAACG---------ACTTCCGCTTCGTGCCCTT 1372
consensus_11843#0      GAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGCCCTT 1500
consensus_11843#3      AACAAAACAAGATATGCAGACCTACATCAACA---------------GGTGNCTGCCTCA 143
                            *    *   ** *  *   *  *  *                * *   ****   

consensus_11843#1      CGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCAC 1469
consensus_11843#2      CGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCAC 1432
consensus_11843#0      CGGCGTGGGCCGCCGCAGCTGCCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCAT 1560
consensus_11843#3      CAGNG--------CATACATACCCCG--------CCGGTGN-GCTCAGGCTCAAGCTCAG 186
                       * * *        *  *  * *** *        *  * *  ** **   *   * *** 

consensus_11843#1      GCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGA 1529
consensus_11843#2      GCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGA 1492
consensus_11843#0      CGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGA 1620
consensus_11843#3      CCTCAGC--GCTCGNCAAGTACAGTAGACTCCAAGCCCAGTCAATGGNTGCAACCGGGCA 244
                         ** *    ** *    *  *       *     * * * *       *  *    * *

consensus_11843#1      CACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTG 1589
consensus_11843#2      CACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTG 1552
consensus_11843#0      CGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTT 1680
consensus_11843#3      CACGGCTCACGCGCGNGTACGCTTT-----CCAATTCGTCACATCTGTCTTCAT-GCCAG 298
                       *       *       *  *  **      ***  **  **       *  * * * *  

consensus_11843#1      CAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTT 1649
consensus_11843#2      CAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTT 1612
consensus_11843#0      CCACCCCATCTCTGCCTGA----ACTCATCGAATCCCTTGAATCAAGTTCGTGC--CATC 1734
consensus_11843#3      GTACACCACATGAGCTCTTG---GCTCGTGGTTCTACTCATGTTGGATAACTGCAAT--- 352
                         *  ***     **             * *     **    *        ***      

consensus_11843#1      ATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGGGTAGTTA 1709
consensus_11843#2      ATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGG--TAGTTA 1670
consensus_11843#0      AGTCGATAAATCCAATTAAAATTTTTGTTT--GTTTATAAAATTGCAGAAGAATAGGTTA 1792
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      TGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTT-CT 1768
consensus_11843#2      TGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCT 1730
consensus_11843#0      TAAATGACAGCT-TACAGCATGTTTTCAGTTTTGT----TTCCTAAAGAGTGTA------ 1841
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      TATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAAAAA 1828
consensus_11843#2      TATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATAT 1790
consensus_11843#0      ---ATTTGAAAAGTGAAATGGAATTGTCATCCAACTAGTGTGAGAAAGTGCTC------- 1891
consensus_11843#3      ------------------------------------------------------------
                                                                                   

consensus_11843#1      AAAAAAAAAAAAAAA--AGGCCACAT--- 1852
consensus_11843#2      ATCATTTCTGGCTATTTACACTTCATCAA 1819
consensus_11843#0      -----------------------------
consensus_11843#3      -----------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)