These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1891 fasta sequence [CAGCTCGCTTTGCAATTCCACCAACTAAAATCAAACCACCAAAACACAACACAGGGACGTATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTGGCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTGTTCGTCAAGTCGTTCGTGCAGGCGCAGCATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTGTTTGTCGGCATTGCGGTGGGCGCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTGTTCGGCAAC-TGGCTGCAGGTGGGCAACGACCTGAACCACCGGTTCCTCGCGGCGA-TGTCGGC-ACGGT-ACGGTCCCGTGTTCCGTCTGCGGCTGGGCGTGCGCAACCTGGTGGTGGTGTCGGACCCGAAGCTGGCGACGGAGGTGCTGCACACGCAGGGCGTGGAGTTCGGCTCCCGCCCGCGCAACGTCGTCTTCGACATCTTCACCGCCAACGGCGCCGACATGGTGTTCACCGAGTACGGCGACCACTGGCGACGCATGCGCCGCGTCATGACGCTGCCGTTCTTCACGGCGCGCGTCGTGCAGCAGTACAAGGCCATGTGGGAGGCCGAGATGGACGCCGTCGTGGACGACGTGCGCGGCGACGCGGTGGCGCAGGGCACCGGCTTCGTGGTGCGACGCAGGCTGCAGCTCATGCTGTACAACATCATGTACCGGATGATGTTCGACGCGCGGTTCGAGTCGGTGGACGACCCCATGTTCATCGAGGCCACCAGGTTCAACTCCGAGCGCAGCCGCCTCGCGCAGAGCTTCGAGTACAACTACGGCGACTTCATCCCCATCCTCCGTCCCTTCTTGCGGGGGCTACCTCAACAAGTGCCGTGACCTCCAGAGCAGGAGGCTCGCCTTCTTCAACAACAACTACGTCGAGAAGAGAAGGAAGGTGATGGACACTCCGGGAGACAGGAACAAGCTCCGGTGCGCGATCGACCATATCCTTGAGGCGGAGAAGAACGGCGAGCTGACGGCGGAGAACGTGATCTACATCGTGGAGAACATCAACGTGGCCGCCATCGAGACGACGCTCTGGTCCATCGAGTGGGCGCTGGCCGAGGTCGTCAACCACCCGGCGGTGCAGAGCAAGGTCCGCGCCGAGATCAACGACGTGCTCGGCGACGACGAGCCCATCACCGAGTCCAGCATCCACAAGCTGACTTACCTGCAGGCCGTGATCAAGGAGACGCTGCGGCTGCACTCCCCGATCCCGCTGCTGGTGCCGCACATGAACCTGGAGGAGGCCAAGCTCGGCGGGTACACCATCCCCAAGGGATCCAAGGTGGTGGTGAACGCGTGGTGGCTGGCCAACAACCCGGCGCTGTGGGAGAACCCCGAGGAGTTCCGGCCTGAGCGGTTCTTGGAGAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGCCCTTCGGCGTGGGCCGCCGCAGCTG-CCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCATCGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGACGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTTCCACCCCATCTCTGCCTGAACTCATCGAATCCC-TTGAATCAAGTTCGTGCCATCAGTCGATAAATCCAATTAAAATTTTTGTTTGTTTATAAAATTGCAGAAGAATAGGTTATAAATGACAGCTTACAGCATGTTTTCAGTTTTGTTTCCTAAAGAGTGTAATTTGAAAAGTGAAATGGAATTGTCATCCAACTAGTGTGAGAAAGTGCTC] [+] EMBL AK072588 [CAGCTCGCTTTGCAATTCCACCAACTAAAATCAAACCACCAAAACACAACACAGGGACGTATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTGGCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTGTTCGTCAAGTCGTTCGTGCAGGCGCAGCATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTGTTTGTCGGCATTGCGGTGGGCGCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTGTTCGGCAAC TGGCTGCAGGTGGGCAACGACCTGAACCACCGGTTCCTCGCGGCGA TGTCGGC ACGGT ACGGTCCCGTGTTCCGTCTGCGGCTGGGCGTGCGCAACCTGGTGGTGGTGTCGGACCCGAAGCTGGCGACGGAGGTGCTGCACACGCAGGGCGTGGAGTTCGGCTCCCGCCCGCGCAACGTCGTCTTCGACATCTTCACCGCCAACGGCGCCGACATGGTGTTCACCGAGTACGGCGACCACTGGCGACGCATGCGCCGCGTCATGACGCTGCCGTTCTTCACGGCGCGCGTCGTGCAGCAGTACAAGGCCATGTGGGAGGCCGAGATGGACGCCGTCGTGGACGACGTGCGCGGCGACGCGGTGGCGCAGGGCACCGGCTTCGTGGTGCGACGCAGGCTGCAGCTCATGCTGTACAACATCATGTACCGGATGATGTTCGACGCGCGGTTCGAGTCGGTGGACGACCCCATGTTCATCGAGGCCACCAGGTTCAACTCCGAGCGCAGCCGCCTCGCGCAGAGCTTCGAGTACAACTACGGCGACTTCATCCCCATCCTCCGTCCCTTCTTGCGGGGGCTACCTCAACAAGTGCCGTGACCTCCAGAGCAGGAGGCTCGCCTTCTTCAACAACAACTACGTCGAGAAGAGAAGGAAGGTGATGGACACTCCGGGAGACAGGAACAAGCTCCGGTGCGCGATCGACCATATCCTTGAGGCGGAGAAGAACGGCGAGCTGACGGCGGAGAACGTGATCTACATCGTGGAGAACATCAACGTGGCCGCCATCGAGACGACGCTCTGGTCCATCGAGTGGGCGCTGGCCGAGGTCGTCAACCACCCGGCGGTGCAGAGCAAGGTCCGCGCCGAGATCAACGACGTGCTCGGCGACGACGAGCCCATCACCGAGTCCAGCATCCACAAGCTGACTTACCTGCAGGCCGTGATCAAGGAGACGCTGCGGCTGCACTCCCCGATCCCGCTGCTGGTGCCGCACATGAACCTGGAGGAGGCCAAGCTCGGCGGGTACACCATCCCCAAGGGATCCAAGGTGGTGGTGAACGCGTGGTGGCTGGCCAACAACCCGGCGCTGTGGGAGAACCCCGAGGAGTTCCGGCCTGAGCGGTTCTTGGAGAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGCCCTTCGGCGTGGGCCGCCGCAGCTG CCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCATCGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGACGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTTCCACCCCATCTCTGCCTGAACTCATCGAATCCC TTGAATCAAGTTCGTGCCATCAGTCGATAAATCCAATTAAAATTTTTGTTTGTTTATAAAATTGCAGAAGAATAGGTTATAAATGACAGCTTACAGCATGTTTTCAGTTTTGTTTCCTAAAGAGTGTAATTTGAAAAGTGAAATGGAATTGTCATCCAACTAGTGTGAGAAAGTGCTC] [+] EMBL AU093333 [ ACGTATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTGGCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTNTTCGTCAAGTCGTTCGTGCAGGCGCA NATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTNTTTGTCGGCATTGCGGTGGGCGCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTNTTCGGCAACTTGGCTGCAGGTGGGCAACGACCTNAACCACCGGTTCCTCGCGGCGATTNTCGGCAACGGTAACGGTTCCc ] [+] EMBL AU058037 [ GAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGNCCTTNGGCGTGGGCCGCCGCAGCTGNCCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCATCGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGACGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTTCCACCCCATCTCTGCCTGAACTCATCGAATCCCTTTGAATCAAGTTCGTGCCATCAGTCGATAAATCCAATTAAAATTTTTGTTTGTTTATAAAATTGCAGAAGAATAGGTTATAAATGACAGCTTACAGCATGTTTTCAGTTTTGTTTCCTAAAGAGTGTAATTTGAAAAGTGAAATGGAATTGTCATCCAACTAaaaaaaaa ] consensusID : consensus_11843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1852 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGAAAAGCAGAGCAGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGACACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTGCAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK104994 [TTCCTCGAGCACTGTTGGCCTACTGGAAAAGCAGAGCAGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGACACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTGCAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL CA754722 [ AGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGACACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTGCAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCANATCAATCATGTGCTGCGTTATCCTATTGCAC ] consensusID : consensus_11843#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1819 fasta sequence [AGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGA-CAAGGTGGACA-CC-ACC-GAGAAGCC-C-GG--CCAGTTC-AGCAA--CCAGATCC-TCAAGCAC-GC--CACCGTCG-TCTGCAAGCC-CATCGACGCCTAGGTCGATCGATCGACCTACTC-AAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATATATCATTTCTGGCTATTTACACTTCATCAA] [+] EMBL AK100598 [AGCGCATCTGCATCCAAAACCAAACCCAAACTCGTCTTCTCCACCGGAGCAGAGCAGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAGGTCCTCCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCCAAGCTCACCGGGAAGAGGCTCCGCCTCCCGCCCGGCCCCGCCGGCGCGCCCATCGTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCGCGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCCAGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACCCGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTACGGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTGGTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGCCGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATGTACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTCTTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTACAACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCGCTACCTCGCACGCTGCCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAAGAGAGTGATGGAACAGACTGGTGAGATCCGGTGCGCCATGGACCACATCCTCGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACATCAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGTGAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGCGGCGGTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGGCAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGA CAAGGTGGACA CC ACC GAGAAGCC C GG CCAGTTC AGCAA CCAGATCC TCAAGCAC GC CACCGTCG TCTGCAAGCC CATCGACGCCTAGGTCGATCGATCGACCTACTC AAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATATATCATTTCTGGCTATTTACACTTCATCAA] [+] EMBL BI802565 [ GATGGATCAAGGTGGACATCCAACCTGAGAAGCCACAGGCACCAGTTCAAGCAAACCCAGATCCGTCAAGCACAGCCACACCGTCGTTCTGCAAGCCACATCGACGCCTAGGTCGATCGATCGACCTACTCAAAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAAAAGGTTGTATTTTT TTTGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACaaaaa ] [+] EMBL AU097529 [ TTGTTGTAGGTTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATATATCATTTCTGGCTATTTACACTTCAaaaa] consensusID : consensus_11843#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TTTTTCTTTTAAGTGTAAATAGCCAGNAACTGATATATTTGCAATGTCTGGGCAGTATAGATTACCAATACTTAAGTTTGAACCAACAAGTATANGCAAACAAAACAAGATATGCAGACCTACATCAACAGGTGNCTGCCTCACAGNGCATACATACCCCGCCGGTGNGCTCAGGCTCAAGCTCAGCCTCAGCGCTCGNCAAGTACAGTAGACTCCAAGCCCAGTCAATGGNTGCAACCGGGCACACGGCTCACGCGCGNGTACGCTTTCCAATTCGTCACATCTGTCTTCATGCCAGGTACACCACATGAGCTCTTGGCTCGTGGTTCTACTCATGTTGGATAACTGCAAT] [+] EMBL D43193 [TTTTTCTTTTAAGTGTAAATAGCCAGNAACTGATATATTTGCAATGTCTGGGCAGTATAGATTACCAATACTTAAGTTTGAACCAACAAGTATANGCAAACAAAACAAGATATGCAGACCTACATCAACAGGTGNCTGCCTCACAGNGCATACATACCCCGCCGGTGNGCTCAGGCTCAAGCTCAGCCTCAGCGCTCGNCAAGTACAGTAGACTCCAAGCCCAGTCAATGGNTGCAACCGGGCACACGGCTCACGCGCGNGTACGCTTTCCAATTCGTCACATCTGTCTTCATGCCAGGTACACCACATGAGCTCTTGGCTCGTGGTTCTACTCATGTTGGATAACTGCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11843#1 -----------------------------------------------TTCCTCGAGCACT 13 consensus_11843#2 ------------------------------------------------------------ consensus_11843#0 CAGCTCGCTTTGCAATTCCACCAACTAAAATCAAACCACCAAAACACAACACAGGGACGT 60 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GTTGGCCTACTGGAAAAGCAGAGCAGCGC-ATCTGCAT--CCAAAACCAAACCCAAACTC 70 consensus_11843#2 ------------------------AGCGC-ATCTGCAT--CCAAAACCAAACCCAAACTC 33 consensus_11843#0 ATCGCACAGCCAGTGAGCGGGTCTAGTTCGAGCAGCATGGCGGCCTCCGCGATGAGGGTG 120 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GTCTTCTCCACCGGAGCAGAGC-AGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAG 129 consensus_11843#2 GTCTTCTCCACCGGAGCAGAGC-AGCGGCGGCGGCAATGGACGCCCTCCTCGTGGAGAAG 92 consensus_11843#0 GCCATCGCCACCGGGGCGTCGTTGGCGGTGCATTTGTTCGTCAAGTCGTTCGTGCAGGCG 180 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 ----GTCCT--------CCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCC 177 consensus_11843#2 ----GTCCT--------CCTGGGCCTGTTCGTGGCGGCGGTGCTGGCCCTAGTGGTGGCC 140 consensus_11843#0 CAGCATCCTGCTCTCACCTTGCTGCTGCCAGTGGCTGTGTTTGTCGGCATTGCGGTGGGC 240 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 AAGCTCACCGGGAA--GAGGCTCCGCC----TCCCGCCCGGCCCCGCCGGCGCGCCCATC 231 consensus_11843#2 AAGCTCACCGGGAA--GAGGCTCCGCC----TCCCGCCCGGCCCCGCCGGCGCGCCCATC 194 consensus_11843#0 GCGAAGGGCGGGAGCGGTGGTGACGGGAAGGCGCCGCCGGGGCCGGCGGCCGTGCCGGTG 300 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCG 291 consensus_11843#2 GTCGGCAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTGATGGCGCTGGCG 254 consensus_11843#0 TTCGGCAACTGGCTGCAGGTGGGCAACGACCTGAACCACCGGTTCCTCGCGGCGATGTCG 360 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 CGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCC 351 consensus_11843#2 CGGCGGTTCGGCGACATCCTCCTCCTCCGCATGGGCGTCCGCAACCTGGTGGTGGTGTCC 314 consensus_11843#0 GCACGGTACGGTCCCGTGTTCCGTCTGCGGCTGGGCGTGCGCAACCTGGTGGTGGTGTCG 420 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 AGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACC 411 consensus_11843#2 AGCCCGGACCTCGCCAAGGAGGTGCTCCACACCCAGGGCGTCGAGTTCGGCTCCCGCACC 374 consensus_11843#0 GACCCGAAGCTGGCGACGGAGGTGCTGCACACGCAGGGCGTGGAGTTCGGCTCCCGCCCG 480 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 CGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTAC 471 consensus_11843#2 CGCAACGTGGTGTTCGACATCTTCACCGGGAAGGGGCAGGACATGGTGTTCACCGTGTAC 434 consensus_11843#0 CGCAACGTCGTCTTCGACATCTTCACCGCCAACGGCGCCGACATGGTGTTCACCGAGTAC 540 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTG 531 consensus_11843#2 GGCGACCACTGGCGCAAGATGCGGCGGATCATGACGGTGCCCTTCTTCACCAACAAGGTG 494 consensus_11843#0 GGCGACCACTGGCGACGCATGCGCCGCGTCATGACGCTGCCGTTCTTCACGGCGCGCGTC 600 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGC 591 consensus_11843#2 GTGGCCCAGAACCGCGCGGGTTGGGAGGAGGAGGCGAGGCTGGTGGTGGAGGACGTCCGC 554 consensus_11843#0 GTGCAGCAGTACAAGGCCATGTGGGAGGCCGAGATGGACGCCGTCGTGGACGACGTGCGC 660 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 CGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATG 651 consensus_11843#2 CGCGACCCCGCCGCGGCGACCTCCGGCGTGGTGATCCGGCGAAGGTTGCAGCTGATGATG 614 consensus_11843#0 GGCGACGCGGTGGCGCAGGGCACCGGCTTCGTGGTGCGACGCAGGCTGCAGCTCATGCTG 720 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 TACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTC 711 consensus_11843#2 TACAACGACATGTTCCGCATCATGTTCGACCGCCGTTTCGACAGCGTGGACGACCCGCTC 674 consensus_11843#0 TACAACATCATGTACCGGATGATGTTCGACGCGCGGTTCGAGTCGGTGGACGACCCCATG 780 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 TTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTAC 771 consensus_11843#2 TTCAACAAGCTCAAGGCCTTCAACGCGGAGCGCAGCCGCCTCTCGCAGAGCTTCGAGTAC 734 consensus_11843#0 TTCATCGAGGCCACCAGGTTCAACTCCGAGCGCAGCCGCCTCGCGCAGAGCTTCGAGTAC 840 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 AACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCG-CTACCTCGCACGCTG 830 consensus_11843#2 AACTACGGTGACTTCATCCCCGTCCTCCGCCCCTTCCTCCGCCG-CTACCTCGCACGCTG 793 consensus_11843#0 AACTACGGCGACTTCATCCCCATCCTCCGTCCCTTCTTGCGGGGGCTACCTCAACAAGTG 900 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 CCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAA 890 consensus_11843#2 CCACCAGCTCAAGTCCCAGCGCATGAAGCTCTTCGAGGACCACTTCGTCCAGGAACGCAA 853 consensus_11843#0 CCGTGACCTCCAGAGCAGGAGGCTCGCCTTCTTCAACAACAACTACGTCGAGAAGAGAAG 960 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GAGAGTGATGGA-------ACAGACTGG--TGAGATCCGGTGCGCCATGGACCACATCCT 941 consensus_11843#2 GAGAGTGATGGA-------ACAGACTGG--TGAGATCCGGTGCGCCATGGACCACATCCT 904 consensus_11843#0 GAAGGTGATGGACACTCCGGGAGACAGGAACAAGCTCCGGTGCGCGATCGACCATATCCT 1020 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 CGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACAT 1001 consensus_11843#2 CGAGGCCGAGAGGAAGGGCGAGATCAACCACGACAACGTCCTCTACATCGTCGAGAACAT 964 consensus_11843#0 TGAGGCGGAGAAGAACGGCGAGCTGACGGCGGAGAACGTGATCTACATCGTGGAGAACAT 1080 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 CAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGT 1061 consensus_11843#2 CAACGTTGCTGCTATCGAGACGACGCTGTGGTCGATCGAATGGGGAATCGCGGAGCTGGT 1024 consensus_11843#0 CAACGTGGCCGCCATCGAGACGACGCTCTGGTCCATCGAGTGGGCGCTGGCCGAGGTCGT 1140 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGC 1121 consensus_11843#2 GAACCACCCGAGCATCCAGTCGAAGGTGCGGGAGGAGATGGCGTCGGTGCTGGGCGGCGC 1084 consensus_11843#0 CAACCACCCGGCGGTGCAGAGCAAGGTCCGCGCCGAGATCAACGACGTGCTCGGCGACGA 1200 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GGCG---GTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGA 1178 consensus_11843#2 GGCG---GTGACGGAGCCGGACCTGGAGCGGCTGCCGTACCTGCAGGCGGTGGTGAAGGA 1141 consensus_11843#0 CGAGCCCATCACCGAGTCCAGCATCCACAAGCTGACTTACCTGCAGGCCGTGATCAAGGA 1260 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 GACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGG 1238 consensus_11843#2 GACGCTGCGGTTGCGCATGGCGATCCCGCTGCTGGTGCCGCACATGAACCTCGCCGACGG 1201 consensus_11843#0 GACGCTGCGGCTGCACTCCCCGATCCCGCTGCTGGTGCCGCACATGAACCTGGAGGAGGC 1320 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 CAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCT 1298 consensus_11843#2 CAAGCTCGCCGGCTACGACATCCCCGCCGAGTCCAAGATCCTGGTGAACGCGTGGTTCCT 1261 consensus_11843#0 CAAGCTCGGCGGGTACACCATCCCCAAGGGATCCAAGGTGGTGGTGAACGCGTGGTGGCT 1380 consensus_11843#3 ------------------TTTTTCTTTTAAGTGTAAA----TAGCCAGNAACTGATATAT 38 * * * ** * * * ** * * consensus_11843#1 CGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGA 1358 consensus_11843#2 CGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAGAGGTTCCTGGA 1321 consensus_11843#0 GGCCAACAACCCGGCGCTGTGGGAGAACCCCGAGGAGTTCCGGCCTGAGCGGTTCTTGGA 1440 consensus_11843#3 TTGCAATGTCTGGGCAGTATAGATTACCAATACTTAAGTTTGAACCAACAAGTATANGCA 98 *** * * * * * * * * * ** * * consensus_11843#1 GGAGGAGAAGGCCGTGGAGGCGCACGGCAACG---------ACTTCCGCTTCGTGCCCTT 1409 consensus_11843#2 GGAGGAGAAGGCCGTGGAGGCGCACGGCAACG---------ACTTCCGCTTCGTGCCCTT 1372 consensus_11843#0 GAAGGAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGCCCTT 1500 consensus_11843#3 AACAAAACAAGATATGCAGACCTACATCAACA---------------GGTGNCTGCCTCA 143 * * ** * * * * * * * **** consensus_11843#1 CGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCAC 1469 consensus_11843#2 CGGCGTCGGCCGCCGCAGCTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCAC 1432 consensus_11843#0 CGGCGTGGGCCGCCGCAGCTGCCCGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCAT 1560 consensus_11843#3 CAGNG--------CATACATACCCCG--------CCGGTGN-GCTCAGGCTCAAGCTCAG 186 * * * * * * *** * * * * ** ** * * *** consensus_11843#1 GCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGA 1529 consensus_11843#2 GCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGCCGCCCGGGATGGACAAGGTGGA 1492 consensus_11843#0 CGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCGGGCGTGGAGAAGCTGGA 1620 consensus_11843#3 CCTCAGC--GCTCGNCAAGTACAGTAGACTCCAAGCCCAGTCAATGGNTGCAACCGGGCA 244 ** * ** * * * * * * * * * * * * consensus_11843#1 CACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTG 1589 consensus_11843#2 CACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTCTG 1552 consensus_11843#0 CGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTT 1680 consensus_11843#3 CACGGCTCACGCGCGNGTACGCTTT-----CCAATTCGTCACATCTGTCTTCAT-GCCAG 298 * * * * ** *** ** ** * * * * * consensus_11843#1 CAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTT 1649 consensus_11843#2 CAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTT 1612 consensus_11843#0 CCACCCCATCTCTGCCTGA----ACTCATCGAATCCCTTGAATCAAGTTCGTGC--CATC 1734 consensus_11843#3 GTACACCACATGAGCTCTTG---GCTCGTGGTTCTACTCATGTTGGATAACTGCAAT--- 352 * *** ** * * ** * *** consensus_11843#1 ATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGGGTAGTTA 1709 consensus_11843#2 ATCCTATTGCACTAAAAAAAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGG--TAGTTA 1670 consensus_11843#0 AGTCGATAAATCCAATTAAAATTTTTGTTT--GTTTATAAAATTGCAGAAGAATAGGTTA 1792 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 TGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTT-CT 1768 consensus_11843#2 TGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGGTTTACTTAACTTTTTTTTTTCT 1730 consensus_11843#0 TAAATGACAGCT-TACAGCATGTTTTCAGTTTTGT----TTCCTAAAGAGTGTA------ 1841 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 TATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAAAAA 1828 consensus_11843#2 TATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAATAT 1790 consensus_11843#0 ---ATTTGAAAAGTGAAATGGAATTGTCATCCAACTAGTGTGAGAAAGTGCTC------- 1891 consensus_11843#3 ------------------------------------------------------------ consensus_11843#1 AAAAAAAAAAAAAAA--AGGCCACAT--- 1852 consensus_11843#2 ATCATTTCTGGCTATTTACACTTCATCAA 1819 consensus_11843#0 ----------------------------- consensus_11843#3 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||