Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11844 cluster # 11844       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11844#0 length = 2205 sequences # 7  
consensus_11844#1 length = 675 sequences # 2  

consensusID : consensus_11844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2205
fasta sequence
                              [TCCCACACGCGCACACACACAGACAGACAAGAGGAGTGAGGGGGAAGAAGTGCTTGACTTCACCACCAATGGCGGCTGCTGCGGCGGCGCTCTTGGCCTTCGTCGCCGTCGCCGGCGNCTTGGTTGCGCAGGCCACCGACCCCTACGTCTTCTTCGACTGGGACGTCTCCTTCATCACCGCTTCCCCGCTAGGCCTTCCCCAGAAGGTTATCGCAATCAACAAGCAGTTCCCTGGCCCCGTCATGAACCTCACCACCAACTACAATGTGGTCGTCAATGTGCTCAACAGCTTGGATGAGCCATTACTCATCACTTGGGATGGGATCCAGCAAAGAAAGAATTGCT-GGCAGGATGGTGTTCTTGGCACAACC-TGCCCCATACCTCCAGGTTGGAAC-TGGACCTACAATTTCCAAGTCAAGGACCAGATTGGGAGCTTCTTTTACTTCCCACCCCTTAGCCTGCAGCGTGCTGCTGGTGGTTTCGGAGGTATTACTGTCAACAACCGCGCCGTCATTTCTGTCCCATTCGACACACCAGATGGAGATATCACCTTGTTCATTGGGGACTGGTACAAGAAGAGCCACACGGACCTGAGGAAGATGCTCGATGATGGAAAAGAGCTCGGGATGCCTGATGGAGTTCTGATGAATGGCAAGGGGCCGTATAGGTACAATGATTCCCTCGTCCCTGCTGGCATTGAACATGAGACTATCAAAGTTGAACCAGGAAAAACATACCGTTTCCGTGTCCACAATGTGGGTATATCGACGAGCTTGAACTTCAGGATTCAGAACCACAATTTGGCCCTTGTTGAAACTGAGGGATCATACACAATGAAGCAGAATTTCACAAATCTTGACATCCATGTGGGACAGTCCTACTCATTTTTGATCACCATGGATCAGAATGCAAGCAGTGACTACTACATTGTGGCCAGTGCT-AGGTTTGTTAATGAATCACTGTGGACCAAAGTTACCGGTGTTGCAATCTTGCAGTATTCAAATTCAAAGGGAAAAGCTTCTGGCCCTCTTCCTGATCCACCAAATGATGAGTACGACAAAACTTTCTCAATGAACCAGGCACGCTCCATCAGGATGAATGTGAGTACTGGTGCTGCTCGTCCAAATCCTCAAGGTTCATTTCACTATGGCTCTATCAACGTCAGCCAGGTTTACAAGCTCAGGAATGAACCACCTGTTACTATCAACGGGAAAAAACGGACTACACT-GAGTGGTATCTCTTTTTCCCCACCTGATACCCCTATGAGGTTGGCGGATCTCTATGACAAGAAAGGAGTGTACACGCTTGACTTCCCTACTATGCCAATTGATGGACCGCCAGTGATGAAAACTTCTGTCATTAACTCCACATACAAGAATTTCTTGGAAATTGTATTTCAGAACAATGACACGAAAGTCCAGACCTACCATATCGATGGATATGCATTTTGGGTTGTAGGGATGGACTATGGTGAGTGGACTGAGAATAGCCGTGGGACTTACAACAAGTGGGATGGTGTTTCTCGTTGCACCACACAGGTATTCCCTGGAGCATGGACTGCTGTGATGCTGTCACTTGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGGACACATGGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTATAATGTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAGAAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTCTGCTGCATCACCAAACCGCTATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATATTTTTCCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCGGGTAGGTCGAAAAATTTGTAGGTTCCATGATTCGTGTGGAATACTGTCATTGTGCATCGGCAAAGTTTGTCGGAATTTAACAGAGATTGTGTAAACCATTGCATTGAGTCTGTGTGTCGGCACCTGCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCTGGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCTCTCCTGTTCCTGTCTCTCTGTATGAAGTTGCAGATACTATAATATTT]

[+] EMBL AK102494             [TCCCACACGCGCACACACACAGACAGACAAGAGGAGTGAGGGGGAAGAAGTGCTTGACTTCACCACCAATGGCGGCTGCTGCGGCGGCGCTCTTGGCCTTCGTCGCCGTCGCCGGCGCCTTGGTTGCGCAGGCCACCGACCCCTACGTCTTCTTCGACTGGGACGTCTCCTTCATCACCGCTTCCCCGCTAGGCCTTCCCCAGAAGGTTATCGCAATCAACAAGCAGTTCCCTGGCCCCGTCATGAACCTCACCACCAACTACAATGTGGTCGTCAATGTGCTCAACAGCTTGGATGAGCCATTACTCATCACTTGGGATGGGATCCAGCAAAGAAAGAATTGCT GGCAGGATGGTGTTCTTGGCACAACC TGCCCCATACCTCCAGGTTGGAAC TGGACCTACAATTTCCAAGTCAAGGACCAGATTGGGAGCTTCTTTTACTTCCCACCCCTTAGCCTGCAGCGTGCTGCTGGTGGTTTCGGAGGTATTACTGTCAACAACCGCGCCGTCATTTCTGTCCCATTCGACACACCAGATGGAGATATCACCTTGTTCATTGGGGACTGGTACAAGAAGAGCCACACGGACCTGAGGAAGATGCTCGATGATGGAAAAGAGCTCGGGATGCCTGATGGAGTTCTGATGAATGGCAAGGGGCCGTATAGGTACAATGATTCCCTCGTCCCTGCTGGCATTGAACATGAGACTATCAAAGTTGAACCAGGAAAAACATACCGTTTCCGTGTCCACAATGTGGGTATATCGACGAGCTTGAACTTCAGGATTCAGAACCACAATTTGGCCCTTGTTGAAACTGAGGGATCATACACAATGAAGCAGAATTTCACAAATCTTGACATCCATGTGGGACAGTCCTACTCATTTTTGATCACCATGGATCAGAATGCAAGCAGTGACTACTACATTGTGGCCAGTGCT AGGTTTGTTAATGAATCACTGTGGACCAAAGTTACCGGTGTTGCAATCTTGCAGTATTCAAATTCAAAGGGAAAAGCTTCTGGCCCTCTTCCTGATCCACCAAATGATGAGTACGACAAAACTTTCTCAATGAACCAGGCACGCTCCATCAGGATGAATGTGAGTACTGGTGCTGCTCGTCCAAATCCTCAAGGTTCATTTCACTATGGCTCTATCAACGTCAGCCAGGTTTACAAGCTCAGGAATGAACCACCTGTTACTATCAACGGGAAAAAACGGACTACACT GAGTGGTATCTCTTTTTCCCCACCTGATACCCCTATGAGGTTGGCGGATCTCTATGACAAGAAAGGAGTGTACACGCTTGACTTCCCTACTATGCCAATTGATGGACCGCCAGTGATGAAAACTTCTGTCATTAACTCCACATACAAGAATTTCTTGGAAATTGTATTTCAGAACAATGACACGAAAGTCCAGACCTACCATATCGATGGATATGCATTTTGGGTTGTAGGGATGGACTATGGTGAGTGGACTGAGAATAGCCGTGGGACTTACAACAAGTGGGATGGTGTTTCTCGTTGCACCACACAGGTATTCCCTGGAGCATGGACTGCTGTGATGCTGTCACTTGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGGACACATGGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTATAATGTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAGAAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTCTGCTGCATCACCAAACCGCTATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATATTTTTCCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCGGGTAGGTCGAAAAATTTGTAGGTTCCATGATTCGTGTGGAATACTGTCATTGTGCATCGGCAAAGTTTGTCGGAATTTAACAGAGATTGTGTAAACCATTGCATTGAGTCTGTGTGTCGGCACCTGCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCTGGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCTCTCCTGTTCCTGTCTCTCTGTATGAAGTTGCAGATACTATAATATTT]
[+] EMBL C93463               [                                            AAGAAGTGCTTGACTTCACCACCAATGGCGGCTGCTGCGGCGGCGCTCTTGGCCTTCGTCGCCGNCGCCGGCGNCTTGGTTGCGCAGGCCACCGACCCCTACGTCTTCTTCGACTGGGACGTCTCCTTCATCACCGCTTCCCCGCTAGGCCTTCCCCAGAAGGTTATCGCAATCAACAAGCAGTTCCCTGGCCCCGTCATGAACCTCACCACCAACTACAATGTGGTCGTCAATGTGCTCAACAGCTTGGATGAGCCATTACTCATCACTTGGGATGGGATCCAGCAAAGAAAGAATTGCT GGCAGGATGGTGTTCTTGGCACAACCTTGCCCCATACCTCCAGGTTGG AC TGGACCTACAATTTCCAAGTCAAGGACCAGATT GGNGCTTCTTTTANTTTCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU063393             [                                                   GCTTGACTTCACCACCAATGGCGGCTGCTGCGGCGGCGCTCTTGGCCTTCGTCGCCGTCGCCGGCCGTTTGGTTGCGCAGG CACCGACCCCTACGTCTTCTTCGACTGGGACGTCTCCTTCATCACCGCTTCCCCGCTA GCCTTCCCCAGAAGGTTATCGCAATCAACAAGCAGTTCCCTGGCCCCGTCATGAACCTCACCACCAACTACAATGTGGTCGTCAATGTGCTCAACAGCTTGGATGAGCCATTACTCATCACTTGGGATGGGATCCAGCAAAGAAAGAATTGCTNGGCAGGATGGTGTTCTTGGCACAACCTTGCCCCATACCTNCAGGTTGGAACTTGGACCTACAATTTCCAAGTCAAGGACCAGATTGGGAG TTCTTTTACTT CCAACCCTTAGCCTGCAGCGTTCTTTGGGTGGTTTCGGAGGNATTAtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA882806             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCCTCGTCCCTGCTGGCATTGAACATGAGACTATCAAAGTTGAACCAGGAAAAACATACCGTTTCCGTGTCCACAATGTGGGTATATCGACGAGCTTGAACTTCAGGATTCAGAACCACAATTTGGCCCTTGTTGAAACTGAGGGATCATACACAATGAAGCAGAATTTCACAAATCTTGACATCCATGTGGGACAGTCCTACTCATTTTTGATCACCATGGATCAGAATGCAAGCAGTGACTACTACATTGTGGCCAGTGCT AGGTTTGTTAATGAATCACTGTGGACCAAAGTTACCGGTGTTGCAATCTTGCAGTATTCAAATTCAAAGGGAAAAGCTTCTGGCCCTCTTCCTGATCCACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB000992             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCGTCCCTGCTGGCATTGAACATGAGACTATCAAAGTTGAACCAGGAAAAACATACCGTTTCCGTGTCCACAATGTGGGTATATCGACGAGCTTGAACTTCAGGATTCAGAACCACAATTTGGCCCTTGTTGAAACTGAGGGATCATACACAATGAAGCAGAATTTCACAAATCTTGACATCCATGTGGGACAGTCCTACTCATTTTTGATCACCATGGATCAGAATGCAAGCAGTGACTACTACATTGTGGCCAGTGCTAAGGTTg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AA751506             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGCCNCCTGTTNCTATCAACGGGAAAAAACGGACTACACTATAGTGGTATCTCTTTGTCCCCACCTGATACCCCTATGAGGTNGGCGGATCTCTATGACAANAAAGGAGTGTACACGCTTGACTTCCCTACTATGCCAATTGATGGACCGCCAGTGATGAAAACTTCTGTCATTAACTCCACATACAAGAATTTCTTGGAAATTGTATTTCAGAACAATGACACGAAAGTCCAGACCTACCATATCGATGGATATGCATTTTGGGTTGTAGGGATGGACTATGGTGAGTGGACTGAGAATAGCCGTGGGACTTACAACAAGTGGGATGGTGTTTCTCGTTGCACCACACAGGTATTCCCTGGAGCATGGACTGCTGTGATGCTGTCACTTGACAGCCCGGGTTTTTGGAACGTACGCNCCNAAAATCTGGACACATGGTATCTTGGTCANGAGACATACATCANGGTGGTGGATCCANATGGAAGCTATAATGTCNCTGANATGGTGGCTCCANATAACATGCTCTACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU082304             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAGAAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTCTGCTGCATCACCAAACCGCTATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATATTTTTCCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCGGGTAGGTCGAAAAATTTGTAGGTTCCATGATTCGTGTGGAATACTGTCATTGTGCATCGGCAAAGTTTGTCGGAATTTAACAGAGATTGTGTAAACCATTGCATTGAGTCTGTGTGTCGGCACCTGCAAGGAGTGGTGCCTGAGA TGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCTGGATATTGATGATTGTCATTCCATCTCAATTTAGTACTAaaaaa                                                              ]


>consensus_11844#0 TCCCACACGCGCACACACACAGACAGACAAGAGGAGTGAGGGGGAAGAAGTGCTTGACTT CACCACCAATGGCGGCTGCTGCGGCGGCGCTCTTGGCCTTCGTCGCCGTCGCCGGCGNCT TGGTTGCGCAGGCCACCGACCCCTACGTCTTCTTCGACTGGGACGTCTCCTTCATCACCG CTTCCCCGCTAGGCCTTCCCCAGAAGGTTATCGCAATCAACAAGCAGTTCCCTGGCCCCG TCATGAACCTCACCACCAACTACAATGTGGTCGTCAATGTGCTCAACAGCTTGGATGAGC CATTACTCATCACTTGGGATGGGATCCAGCAAAGAAAGAATTGCTGGCAGGATGGTGTTC TTGGCACAACCTGCCCCATACCTCCAGGTTGGAACTGGACCTACAATTTCCAAGTCAAGG ACCAGATTGGGAGCTTCTTTTACTTCCCACCCCTTAGCCTGCAGCGTGCTGCTGGTGGTT TCGGAGGTATTACTGTCAACAACCGCGCCGTCATTTCTGTCCCATTCGACACACCAGATG GAGATATCACCTTGTTCATTGGGGACTGGTACAAGAAGAGCCACACGGACCTGAGGAAGA TGCTCGATGATGGAAAAGAGCTCGGGATGCCTGATGGAGTTCTGATGAATGGCAAGGGGC CGTATAGGTACAATGATTCCCTCGTCCCTGCTGGCATTGAACATGAGACTATCAAAGTTG AACCAGGAAAAACATACCGTTTCCGTGTCCACAATGTGGGTATATCGACGAGCTTGAACT TCAGGATTCAGAACCACAATTTGGCCCTTGTTGAAACTGAGGGATCATACACAATGAAGC AGAATTTCACAAATCTTGACATCCATGTGGGACAGTCCTACTCATTTTTGATCACCATGG ATCAGAATGCAAGCAGTGACTACTACATTGTGGCCAGTGCTAGGTTTGTTAATGAATCAC TGTGGACCAAAGTTACCGGTGTTGCAATCTTGCAGTATTCAAATTCAAAGGGAAAAGCTT CTGGCCCTCTTCCTGATCCACCAAATGATGAGTACGACAAAACTTTCTCAATGAACCAGG CACGCTCCATCAGGATGAATGTGAGTACTGGTGCTGCTCGTCCAAATCCTCAAGGTTCAT TTCACTATGGCTCTATCAACGTCAGCCAGGTTTACAAGCTCAGGAATGAACCACCTGTTA CTATCAACGGGAAAAAACGGACTACACTGAGTGGTATCTCTTTTTCCCCACCTGATACCC CTATGAGGTTGGCGGATCTCTATGACAAGAAAGGAGTGTACACGCTTGACTTCCCTACTA TGCCAATTGATGGACCGCCAGTGATGAAAACTTCTGTCATTAACTCCACATACAAGAATT TCTTGGAAATTGTATTTCAGAACAATGACACGAAAGTCCAGACCTACCATATCGATGGAT ATGCATTTTGGGTTGTAGGGATGGACTATGGTGAGTGGACTGAGAATAGCCGTGGGACTT ACAACAAGTGGGATGGTGTTTCTCGTTGCACCACACAGGTATTCCCTGGAGCATGGACTG CTGTGATGCTGTCACTTGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGGACA CATGGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTATAATG TCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAGA AGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTCTGCTGCATCACCAAACCGCT ATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATATTTTT CCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCGGGTAGG TCGAAAAATTTGTAGGTTCCATGATTCGTGTGGAATACTGTCATTGTGCATCGGCAAAGT TTGTCGGAATTTAACAGAGATTGTGTAAACCATTGCATTGAGTCTGTGTGTCGGCACCTG CAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCTG GATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCTCT CCTGTTCCTGTCTCTCTGTATGAAGTTGCAGATACTATAATATTT



consensusID : consensus_11844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 675
fasta sequence
                              [GCACGAGCAAAGGGGGGTGGGGTTCCTCGTTGCACCACCCAGGTATTCCGGGAAGCCTGGATGCTTGGATGCTGTCACATGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGGGCCCCATAGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTATAATGTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAGAAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTGTGGTGCATCACCAAACCGCCATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATATTTTT-CCTGTTAGTG-CCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGAC-AGAATTCGTGTAGGTCGAAAAATTTGTAGGTTCCATGGTTCGTGTGGAATACCGTC-ATTGTGCATCGGCAAAGTTTGTCGGAATT-TAACAGAGATTGTGTAAACCA-TTGCA-TTGAGT-T-TGTGTC-GGCACCTGCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCTGGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCTCAAAAAAAAAAAAAA]

[-] EMBL CA759941             [GCACGAGCAAAGGGGGGTGGGGTTCCTCGTTGCACCACCCAGGTATTCCGGGAAGCCTGGATGCTTGGATGCTGTCACATGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGGGCCCCATAGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTATAATGTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAGAAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTGTGGTGCATCACCAAACCGCCATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATATTTTT CCTGTTAGTG CCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGAC AGAATTCGTGTAGGTCGAAAAATTTGTAGGTTCCATGGTTCGTGTGGAATACCGTC ATTGTGCATCGGCAAAGTTTGTCGGAATT TAACAGAGATTGTGTAAACCA TTGCA TTGAGT T TGTGTC GGCACCTGCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCTGGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCTCAAAAAAAAAAAAAA]
[+] EMBL BI800436             [                                                                                                                                                                                                                                                                                                       CAAACCGCTATTGGCTT CA TTGTGGTGTCTCTGGTAGC GCGGTGTTCGTCCAATGAAAAGATTTTTCCCTGTTAGTGCCCCTGTTGGCCTTTGTTTGCAAATTAGGAAACTGACAAGAATTCGGGTAGGTCGAAAAATTTGTAGGTTCCATGATTCGTGTGGAATACTGTCAATTGTGCATCGGCAAAGTTTGTCGGAATTCTAACAGAGATTGTGTAAACCACTTGCACTTGAGTCTGTGTGTCAGGCACCTGCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCTGGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCTCTAAAAAAAAAA   ]


>consensus_11844#1 GCACGAGCAAAGGGGGGTGGGGTTCCTCGTTGCACCACCCAGGTATTCCGGGAAGCCTGG ATGCTTGGATGCTGTCACATGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGG GCCCCATAGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTAT AATGTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAA CAGAAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTGTGGTGCATCACCAAAC CGCCATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATAT TTTTCCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCGTG TAGGTCGAAAAATTTGTAGGTTCCATGGTTCGTGTGGAATACCGTCATTGTGCATCGGCA AAGTTTGTCGGAATTTAACAGAGATTGTGTAAACCATTGCATTGAGTTTGTGTCGGCACC TGCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATC TGGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCT CAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11844#0      TCCCACACGCGCACACACACAGACAGACAAGAGGAGTGAGGGGGAAGAAGTGCTTGACTT 60
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      CACCACCAATGGCGGCTGCTGCGGCGGCGCTCTTGGCCTTCGTCGCCGTCGCCGGCGNCT 120
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TGGTTGCGCAGGCCACCGACCCCTACGTCTTCTTCGACTGGGACGTCTCCTTCATCACCG 180
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      CTTCCCCGCTAGGCCTTCCCCAGAAGGTTATCGCAATCAACAAGCAGTTCCCTGGCCCCG 240
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TCATGAACCTCACCACCAACTACAATGTGGTCGTCAATGTGCTCAACAGCTTGGATGAGC 300
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      CATTACTCATCACTTGGGATGGGATCCAGCAAAGAAAGAATTGCTGGCAGGATGGTGTTC 360
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TTGGCACAACCTGCCCCATACCTCCAGGTTGGAACTGGACCTACAATTTCCAAGTCAAGG 420
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      ACCAGATTGGGAGCTTCTTTTACTTCCCACCCCTTAGCCTGCAGCGTGCTGCTGGTGGTT 480
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TCGGAGGTATTACTGTCAACAACCGCGCCGTCATTTCTGTCCCATTCGACACACCAGATG 540
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      GAGATATCACCTTGTTCATTGGGGACTGGTACAAGAAGAGCCACACGGACCTGAGGAAGA 600
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TGCTCGATGATGGAAAAGAGCTCGGGATGCCTGATGGAGTTCTGATGAATGGCAAGGGGC 660
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      CGTATAGGTACAATGATTCCCTCGTCCCTGCTGGCATTGAACATGAGACTATCAAAGTTG 720
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      AACCAGGAAAAACATACCGTTTCCGTGTCCACAATGTGGGTATATCGACGAGCTTGAACT 780
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TCAGGATTCAGAACCACAATTTGGCCCTTGTTGAAACTGAGGGATCATACACAATGAAGC 840
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      AGAATTTCACAAATCTTGACATCCATGTGGGACAGTCCTACTCATTTTTGATCACCATGG 900
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      ATCAGAATGCAAGCAGTGACTACTACATTGTGGCCAGTGCTAGGTTTGTTAATGAATCAC 960
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TGTGGACCAAAGTTACCGGTGTTGCAATCTTGCAGTATTCAAATTCAAAGGGAAAAGCTT 1020
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      CTGGCCCTCTTCCTGATCCACCAAATGATGAGTACGACAAAACTTTCTCAATGAACCAGG 1080
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      CACGCTCCATCAGGATGAATGTGAGTACTGGTGCTGCTCGTCCAAATCCTCAAGGTTCAT 1140
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TTCACTATGGCTCTATCAACGTCAGCCAGGTTTACAAGCTCAGGAATGAACCACCTGTTA 1200
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      CTATCAACGGGAAAAAACGGACTACACTGAGTGGTATCTCTTTTTCCCCACCTGATACCC 1260
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      CTATGAGGTTGGCGGATCTCTATGACAAGAAAGGAGTGTACACGCTTGACTTCCCTACTA 1320
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TGCCAATTGATGGACCGCCAGTGATGAAAACTTCTGTCATTAACTCCACATACAAGAATT 1380
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      TCTTGGAAATTGTATTTCAGAACAATGACACGAAAGTCCAGACCTACCATATCGATGGAT 1440
consensus_11844#1      ------------------------------------------------------------
                                                                                   

consensus_11844#0      ATGCATTTTGGGTTGTAGGGATGGACTATGGTGAGTGGACTGAGAATAGCCGTGGGACTT 1500
consensus_11844#1      ------------------------------------------------------GCACGA 6
                                                                             * **  

consensus_11844#0      ACAACAAGTGGGATGGTGTTTCTCGTTGCACCACACAGGTATTCCCTGGAGCATGGACTG 1560
consensus_11844#1      GCAA--AGGGGGGTGGGGTTCCTCGTTGCACCACCCAGGTATTCCGGGAAGCCTGGA-TG 63
                        ***  ** *** *** *** ************* **********  * *** **** **

consensus_11844#0      CTGTGATGCTGTCACTTGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGGACA 1620
consensus_11844#1      CTTGGATGCTGTCACATGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGGGCC 123
                       **  *********** ***************************************** * 

consensus_11844#0      C-ATGGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTATAAT 1679
consensus_11844#1      CCATAGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTATAAT 183
                       * ** *******************************************************

consensus_11844#0      GTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAG 1739
consensus_11844#1      GTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAG 243
                       ************************************************************

consensus_11844#0      AAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTCTGCTGCATCACCAAACCGC 1799
consensus_11844#1      AAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTGTGGTGCATCACCAAACCGC 303
                       **************************************** ** ****************

consensus_11844#0      TATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATATTTT 1859
consensus_11844#1      CATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAATATTTT 363
                        ***********************************************************

consensus_11844#0      TCCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCGGGTAG 1919
consensus_11844#1      TCCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCGTGTAG 423
                       ******************************************************* ****

consensus_11844#0      GTCGAAAAATTTGTAGGTTCCATGATTCGTGTGGAATACTGTCATTGTGCATCGGCAAAG 1979
consensus_11844#1      GTCGAAAAATTTGTAGGTTCCATGGTTCGTGTGGAATACCGTCATTGTGCATCGGCAAAG 483
                       ************************ ************** ********************

consensus_11844#0      TTTGTCGGAATTTAACAGAGATTGTGTAAACCATTGCATTGAGTCTGTGTGTCGGCACCT 2039
consensus_11844#1      TTTGTCGGAATTTAACAGAGATTGTGTAAACCATTGCATTGAGTTTGTGT--CGGCACCT 541
                       ******************************************** *****  ********

consensus_11844#0      GCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCT 2099
consensus_11844#1      GCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGAGATCT 601
                       ************************************************************

consensus_11844#0      GGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCTC 2159
consensus_11844#1      GGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTTGTCTC 661
                       ************************************************************

consensus_11844#0      TCCTGTTCCTGTCTCTCTGTATGAAGTTGCAGATACTATAATATTT 2205
consensus_11844#1      AAAAAAAAAAAAAA-------------------------------- 675
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)