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Oryza sativa
cluster # 11855 cluster # 11855       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11855#0 length = 1971 sequences # 8  
consensus_11855#1 length = 793 sequences # 1  

consensusID : consensus_11855#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1971
fasta sequence
                              [TCATTCGAGTCCTCGTGATCCATCCTCCCCGACAGATCGATCCAATTCGCATCATCGCATCACACACCTCCTCCTCCTCCTCCTCCCCCCGCGCCGCCGTCATCCGCGGCCTTACCGGCGACCGACGCGGCCGCCGCGTCGCCCTCCCGCCGCCGCCGCCGCCGCCTCCGACGACGGGTTTCCAAACGGATCCGGTGGAATTCCATCCCTCTCGAGCTTAGCGAGGGGGGAGAGAGAAGAGGAAGAAAGTGAGGGGAAAAAAGCTTCACAAGAATACGCGCACCACGCATGGGGATCCGAGTCGGGAGGTAGACGGAGGGGCGAGATCCGGCGAGGCGGAGAGCGGGAGGGGATTGTCGCGTGGTTTTTGGTTGCTCCCCCCTACCGCCAGCTCCGGCGATCCCGACCACCCACCGGCGACGATGAGCGGCGGCGGCGGAGGAGGCGGAGGCGGAGGAGGAGGAAGCCCCAACAACACGGAATGGCGCTTCAACCAGACGCTCCGCAACGTGCAAGGAATGCTCAAAGGGCGGAGCTTTCCTGGGAAGGTCTTGCTGACCCGAAGATCAGAACCTCTTTCACCTCCTGAATACTCCCCGCGCTATGAGAATGATCGTGATGAATACGAACAGAATGAAGGCTCACAAGAAGGAAAAGGGCAAGCATCTGGAAATACAGCTGATAGTATGAGTGCAAAGAAATCAAATCCTCCATCAACAAGTAGCACCAATTCATTACCAGATGCCCAAGGATTAGTTTCTGGGGCTAGAGCTACAGATTCTGCACGAATTGCTAAATTCACGAACGAACTATCTAGGCCAGCTGTTATATTAGACAAGTTGCGGGAACTGTCTTGGAGTGGTGTTCCACCTTATATGCGACCTAATATATGGAGACTTCTTCTGGGATATGCACCACCTAATGCAGATAGAAGAGAAGGTGTTCTGACGAGGAAAAGACTTGAGTACGTTGAATGTGTTTCTCAATACTATGATATTCCTGATACTGAACGCTCTGATGAAGAGATTAATATGCTTCGACAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTTACCTTTTTCCAGCACCCTCAAATTCAGAAATCTCTGGAGCGCATTTTGTATACATGGGCCATCCGTCATCCAGCAAGTGGTTATGTTCAAGGAATAAACGACCTTCTTACACCATTCTTGGTCGTATTCTTATCAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTTCTCCACAGGATGTTTCTAATATTGAAGCGGACTGTTATTGGTGTCTTTCAAAGTTTCTCGATGGTATGCAAGACCATTACACCTTTGCTCAACCAGGAATTCAGCGCCTT-GTTTTCAGGTTGAAAGAACTTGTT-CAT-CGTATAGATGAA-CCTGTGTCAAAGCACATGGAGGAACAAGGATTGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTTTTCATCT-TGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGC-ACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCA-GCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTGATGTACTCTAGACTTGTCCCCTTTGGGGAAGGAA-CCATGAGGAGACTTCTTTTGTTTTCAGTGCATACTATCAATTGTAACACTACCCCCAATCTGTATATTTTACTTACAGATTATTATCAATGATGATGAATAGATGGCATTCAATTTGTGTATTAAAAAAAAAAAAAAAA]

[+] EMBL AK070794             [TCATTCGAGTCCTCGTGATCCATCCTCCCCGACAGATCGATCCAATTCGCATCATCGCATCACACACCTCCTCCTCCTCCTCCTCCCCCCGCGCCGCCGTCATCCGCGGCCTTACCGGCGACCGACGCGGCCGCCGCGTCGCCCTCCCGCCGCCGCCGCCGCCGCCTCCGACGACGGGTTTCCAAACGGATCCGGTGGAATTCCATCCCTCTCGAGCTTAGCGAGGGGGGAGAGAGAAGAGGAAGAAAGTGAGGGGAAAAAAGCTTCACAAGAATACGCGCACCACGCATGGGGATCCGAGTCGGGAGGTAGACGGAGGGGCGAGATCCGGCGAGGCGGAGAGCGGGAGGGGATTGTCGCGTGGTTTTTGGTTGCTCCCCCCTACCGCCAGCTCCGGCGATCCCGACCACCCACCGGCGACGATGAGCGGCGGCGGCGGAGGAGGCGGAGGCGGAGGAGGAGGAAGCCCCAACAACACGGAATGGCGCTTCAACCAGACGCTCCGCAACGTGCAAGGAATGCTCAAAGGGCGGAGCTTTCCTGGGAAGGTCTTGCTGACCCGAAGATCAGAACCTCTTTCACCTCCTGAATACTCCCCGCGCTATGAGAATGATCGTGATGAATACGAACAGAATGAAGGCTCACAAGAAGGAAAAGGGCAAGCATCTGGAAATACAGCTGATAGTATGAGTGCAAAGAAATCAAATCCTCCATCAACAAGTAGCACCAATTCATTACCAGATGCCCAAGGATTAGTTTCTGGGGCTAGAGCTACAGATTCTGCACGAATTGCTAAATTCACGAACGAACTATCTAGGCCAGCTGTTATATTAGACAAGTTGCGGGAACTGTCTTGGAGTGGTGTTCCACCTTATATGCGACCTAATATATGGAGACTTCTTCTGGGATATGCACCACCTAATGCAGATAGAAGAGAAGGTGTTCTGACGAGGAAAAGACTTGAGTACGTTGAATGTGTTTCTCAATACTATGATATTCCTGATACTGAACGCTCTGATGAAGAGATTAATATGCTTCGACAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTTACCTTTTTCCAGCACCCTCAAATTCAGAAATCTCTGGAGCGCATTTTGTATACATGGGCCATCCGTCAT CAGCAAGTGGTTATGTTCAAGGAATAAACGACCTTCTTACACCATTCTTGGTCGTATTCTTATCAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTTCTCCACAGGATGTTTCTAATATTGAAGCGGACTGTTATTGGTGTCTTTCAAAGTTTCTCGATGGTATGCAAGACCATTACACCTTTGCTCAACCAGGAATTCAGCGCCTT GTTTTCAGGTTGAAAGAACTTGTT CAT CGTATAGATGAA CCTGTGTCAAAGCACATGGAGGAACAAGGATTGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTTTTCATCT TGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGC ACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCA GCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTGATGTACTCTAGACTTGTCCCCTTTGGGGAAGGAA CCATGAGGAGACTTCTTTTGTTTTCAGTGCATACTATCAATTGTAACACTACCCCCAATCTGTATATTTTACTTACAGATTATTATCAATGATGATG                                          ]
[+] EMBL AK066076             [          CCTCGTGATCCATCCTCCCCGACAGATCGATCCAATTCGCATCATCGCATCACACACCTCCTCCTCCTCCTCCTCCCCCCGCGCCGCCGTCATCCGCGGCCTTACCGGCGACCGACGCGGCCGCCGCGTCGCCCTCCCGCCGCCGCCGCCGCCGCCTCCGACGACGGGTTTCCAAACGGATCCGGTGGAATTCCATCCCTCTCGAGCTTAGCGAGGGGGGAGAGAGAAGAGGAAGAAAGTGAGGGGAAAAAAGCTTCACAAGAATACGCGCACCACGCATGGGGATCCGAGTCGGGAGGTAGACGGAGGGGCGAGATCCGGCGAGGCGGAGAGCGGGAGGGGATTGTCGCGTGGTTTTTGGTTGCTCCCCCCTACCGCCAGCTCCGGCGATCCCGACCACCCACCGGCGACGATGAGCGGCGGCGGCGGAGGAGGCGGAGGCGGAGGAGGAGGAAGCCCCAACAACACGGAATGGCGCTTCAACCAGACGCTCCGCAACGTGCAAGGAATGCTCAAAGGGCGGAGCTTTCCTGGGAAGGTCTTGCTGACCCGAAGATCAGAACCTCTATCACCTCCTGAATACTCCCCGCGCTATGAGAATGATCGTGATGAATACGAACAGAATGAAGGCTCACAAGAAGGAAAAGGGCAAGCATCTGGAAACACAGCTGATAGTATGAGTGCAAAGAAATCAAATCCTCCATCAACAAGTAGCACCAATTCATTACCAGATGCCCAAGGATTAGTTTCTGGGGCTAGAGCTACAGATTCTGCGCGAATTGCTAAATTCACGAACGAACTATCTAGGCCAGCTGTTATATTAGACAAGTTGCGGGAACTGTCTTGGAGTGGTGTTCCACCTTATATGCGACCTAATATATGGAGACTTCTTCTGGGATATGCACCACCTAATGCAGATAGAAGAGAAGGTGTTCTGACGAGGAAAAGACTTGAGTACGTTGAATGTGTTTCTCAATACTATGATATTCCTGATACTGAACGCTCTGATGAAGAGATTAATATGCTTCGACAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTTACCTTTTTCCAGCACCCTCAAATTCAGAAATCTCTGGAGCGCATTTTGTATACATGGGCCATCCGTCATCCAGCAAGTGGTTATGTTCAAGGAATAAACGACCTTCTTACACCATTCTTGGTCGTATTCTTATCAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTTCTCCACAGGATGTTTCTAATATTGAAGCGGACTGTTATTGGTGTCTTTCAAAGTTTCTCGATGGTATGCAAGACCATTACACCTTTGCTCAACCAGGAATTCAGCGCCTT GTTTTCAGGTTGAAAGAACTTGTT CAT CGTATAGATGAA CCTGTGTCAAAGCACATGGAGGAACAAGGATTGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTTTTCATCT TGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGC ACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCA GCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTGATGTACTCTAGACTTGTCCCCTTTGGGGAAGGAA CCATGAGGAGACTTCTTTTGTTTTCAGTGCATACTATCAATTGTAACACTACCCCCAATCTGTATATTTTACTTACAGATTATTATCAATGATGATGCATAGATGGCATTCAA                          ]
[+] EMBL CB641303             [                                                                                        CCGCGCCGCCGTCATCCGCGGCCTTACCGGCGACCGACGCGGCCGCCGCGTCGCCCTCCCGCCGCCGCCGCCGCCGCCTCCGACGACGGGTTTCCAAACGGATCCGGTGGAATTCCATCCCTCTCGAGCTTAGCGAGGGGGGAGAGAGAAGAGGAAGAAAGTGAGGGGAAAAAAGCTTCACAAGAATACGCGCACCACGCATGGGGATCCGAGTCGGGAGGTAGACGGAGGGGCGAGATCCGGCGAGGCGGAGAGCGGGAGGGGATTGTCGCGTGGTTTTTGGTTGCTCCCCCCTACCGCCAGCTCCGGCGATCCCGACCACCCACCGGCGACGATGAGCGGCGGCGGCGGAGGAGGCGGAGGCGGAGGAGGAGGAAGCCCCAACAACACGGAATGGCGCTTCAACCAGACGCTCCGCAACGTGCAAGGAATGCTCAAAGGGCGGAGCTTTCCTGGGAAGGTCTTGCTGACCCGAAGATCAGAACCTCTTTCACCTCCTGAATACTCCCCGCGCTATGAGAATGATCGTGATGAATACGAACAGAATGAAGGCTCACAAGAAGGAAAAGGGCAAGCATCTGGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C28019               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCTGTTGATTGCCCAAGAACTGTGCCAGATGTNACCTTTTTCCAGCACCCTCAAATTCAGAAATCTNTGGAGCGCATTTNGTATACATGGGCCATCCGTCATCCAGCAAGTGGTTATGTTCAAGGAATAAACGACCTTNTTACACCATTNTTGGTCGTATTCTTATCAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTTCTCCACAGGNTGTTTCTAATATTGANGCGGACTGTTATTGGTGTNTTTCAAAGTTTCTCGATGGTATNCAAGACCATTACACCTTTGCTCAACCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU085809             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGAATTCAGCGCCTTNGTTTTCAGGTGGAAAGAACTTGTTGCATCCGTATAGATGAACCCTGTGTCAAAGCACATGGAGGAACAAGGATTGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGNCTTATGATTCGTGAGATTCCTTTTCATCT TGTAACNCGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGNTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCNCCATGAGCTTGAGATGGTGCTCNCCAGGGCTTACATGTGGC ACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCA GCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTGATGTACTCTAGACTTGTCCCCTTTGGGGAAGGAA CCATGAGGAGACTTCTTTTGTTTTCAGTGCATACTATCAATTGTAACACTACCCCCAATCTGTATATTTTACTTACAGATTATTATCAATGATGATGAATAGATGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM038173             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAACCACATGGAGGAACAA GATT GACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTTTTCATCTGTGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGC ACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCA GCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTGATGTACTCTAGACTTGTCCCCTTTGGGGAAGGAA CCATGAGGAGACTTCTTTTGTTTTCAGTGCATACTATC ATTGTAAC CTACCCCC ATCTGTATATTTTACTTACAGATTATTATC ATGATGATGAATAG T GCATTCAATTTGTGTATTAAAAAAA         ]
[+] EMBL BI807384             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCTTATGATTCGTGAGATTCCTTTTCATCT TGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGCAACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCACGCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTGATGTACTCTAGACTTGTCCCCTTTGGGGAAGGAACCCATGAGGAGACTTCTTTT TTTTCA TCCATACTATCAATTGTAACACTACCCCCAATCTGTATATTTTACTTACAGATTATTATCAATGATGATGAATAGAT GCATTCAATTTGTGTATTAAAAAAAAAA      ]
[-] EMBL CB636830             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATACCTACCTTGTTGAAGGCGATTATATACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGC ACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCA AATAGGATACCCGATAATAAAAAATGTAATCTATGACCTGATTTTGATGTACTCTAGACTTGTCCCCTTTGGGGAAGGAA CCATGAGGAGACTTCTTTTGTTTTCAGTGCATACTATCAATTGTAACACTACCCCCAATCTGTATATTTTACTTACAGATTATTATCAATGATAATGAATAG                                     ]


>consensus_11855#0 TCATTCGAGTCCTCGTGATCCATCCTCCCCGACAGATCGATCCAATTCGCATCATCGCAT CACACACCTCCTCCTCCTCCTCCTCCCCCCGCGCCGCCGTCATCCGCGGCCTTACCGGCG ACCGACGCGGCCGCCGCGTCGCCCTCCCGCCGCCGCCGCCGCCGCCTCCGACGACGGGTT TCCAAACGGATCCGGTGGAATTCCATCCCTCTCGAGCTTAGCGAGGGGGGAGAGAGAAGA GGAAGAAAGTGAGGGGAAAAAAGCTTCACAAGAATACGCGCACCACGCATGGGGATCCGA GTCGGGAGGTAGACGGAGGGGCGAGATCCGGCGAGGCGGAGAGCGGGAGGGGATTGTCGC GTGGTTTTTGGTTGCTCCCCCCTACCGCCAGCTCCGGCGATCCCGACCACCCACCGGCGA CGATGAGCGGCGGCGGCGGAGGAGGCGGAGGCGGAGGAGGAGGAAGCCCCAACAACACGG AATGGCGCTTCAACCAGACGCTCCGCAACGTGCAAGGAATGCTCAAAGGGCGGAGCTTTC CTGGGAAGGTCTTGCTGACCCGAAGATCAGAACCTCTTTCACCTCCTGAATACTCCCCGC GCTATGAGAATGATCGTGATGAATACGAACAGAATGAAGGCTCACAAGAAGGAAAAGGGC AAGCATCTGGAAATACAGCTGATAGTATGAGTGCAAAGAAATCAAATCCTCCATCAACAA GTAGCACCAATTCATTACCAGATGCCCAAGGATTAGTTTCTGGGGCTAGAGCTACAGATT CTGCACGAATTGCTAAATTCACGAACGAACTATCTAGGCCAGCTGTTATATTAGACAAGT TGCGGGAACTGTCTTGGAGTGGTGTTCCACCTTATATGCGACCTAATATATGGAGACTTC TTCTGGGATATGCACCACCTAATGCAGATAGAAGAGAAGGTGTTCTGACGAGGAAAAGAC TTGAGTACGTTGAATGTGTTTCTCAATACTATGATATTCCTGATACTGAACGCTCTGATG AAGAGATTAATATGCTTCGACAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTTA CCTTTTTCCAGCACCCTCAAATTCAGAAATCTCTGGAGCGCATTTTGTATACATGGGCCA TCCGTCATCCAGCAAGTGGTTATGTTCAAGGAATAAACGACCTTCTTACACCATTCTTGG TCGTATTCTTATCAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTT CTCCACAGGATGTTTCTAATATTGAAGCGGACTGTTATTGGTGTCTTTCAAAGTTTCTCG ATGGTATGCAAGACCATTACACCTTTGCTCAACCAGGAATTCAGCGCCTTGTTTTCAGGT TGAAAGAACTTGTTCATCGTATAGATGAACCTGTGTCAAAGCACATGGAGGAACAAGGAT TGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTT TTCATCTTGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATT TTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTG ATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATG AGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGCACACAATGTTCAAAAGCTCGCCAA GTCACCTCGCCAGCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTGAT GTACTCTAGACTTGTCCCCTTTGGGGAAGGAACCATGAGGAGACTTCTTTTGTTTTCAGT GCATACTATCAATTGTAACACTACCCCCAATCTGTATATTTTACTTACAGATTATTATCA ATGATGATGAATAGATGGCATTCAATTTGTGTATTAAAAAAAAAAAAAAAA



consensusID : consensus_11855#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence
                              [AATAAACGACCTTCTTACACCATTCTTGGTCGTATTCTTATNAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTTCTCCACAGGACGTTTCTAATATTGAAGCGGACTGTTATTGGTGTCTTTCAAAGTTTCTCGATGGTATGCAAGACCATTACACCTTTGCTCAACCAGGAATTCAGCGCCTTGTTTTCAGGTTGAAAGAACTTGTTCATCGTATAGATGAACCTGTTTCAAAGCACATGGAGGAACAAGGATTGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTTTTCATCTTGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGCACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCAGCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTTGGATGGACTCTAGACTTGGTCCCCTTTGGGGAAGGAACCATGAGGAGACTTCTTTTGGTTTTCAGTGCATACTATTCAATTGTAACACTACCCCCAATCTGNATATTTTACTTACAGATTATTATCAATGATGATGAATAGGATGGCATTCAAAAAAAAAAAAA]

[+] EMBL CA767379             [AATAAACGACCTTCTTACACCATTCTTGGTCGTATTCTTATNAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTTCTCCACAGGACGTTTCTAATATTGAAGCGGACTGTTATTGGTGTCTTTCAAAGTTTCTCGATGGTATGCAAGACCATTACACCTTTGCTCAACCAGGAATTCAGCGCCTTGTTTTCAGGTTGAAAGAACTTGTTCATCGTATAGATGAACCTGTTTCAAAGCACATGGAGGAACAAGGATTGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTTTTCATCTTGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGCACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCAGCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTTGGATGGACTCTAGACTTGGTCCCCTTTGGGGAAGGAACCATGAGGAGACTTCTTTTGGTTTTCAGTGCATACTATTCAATTGTAACACTACCCCCAATCTGNATATTTTACTTACAGATTATTATCAATGATGATGAATAGGATGGCATTCAAAAAAAAAAAAA]


>consensus_11855#1 AATAAACGACCTTCTTACACCATTCTTGGTCGTATTCTTATNAGAGCATCTAGAGGGCAA CATGGACACCTGGTCCATGGAAAAGCTTTCTCCACAGGACGTTTCTAATATTGAAGCGGA CTGTTATTGGTGTCTTTCAAAGTTTCTCGATGGTATGCAAGACCATTACACCTTTGCTCA ACCAGGAATTCAGCGCCTTGTTTTCAGGTTGAAAGAACTTGTTCATCGTATAGATGAACC TGTTTCAAAGCACATGGAGGAACAAGGATTGGACTTTCTTCAGTTTGCGTTTCGTTGGTT CAATTGTCTTATGATTCGTGAGATTCCTTTTCATCTTGTAACACGCTTGTGGGATACCTA CCTTGCTGAAGGCGATTATCTACCCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGT TAACGTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGGTCATGTTCCTTCAG CACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGCTCTCCAGGGCTTAC ATGTGGCACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCAGCTAGGATACCCGATAA TCATATCTGTAATCTATGACCTGATTTTTGGATGGACTCTAGACTTGGTCCCCTTTGGGG AAGGAACCATGAGGAGACTTCTTTTGGTTTTCAGTGCATACTATTCAATTGTAACACTAC CCCCAATCTGNATATTTTACTTACAGATTATTATCAATGATGATGAATAGGATGGCATTC AAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11855#0      TCATTCGAGTCCTCGTGATCCATCCTCCCCGACAGATCGATCCAATTCGCATCATCGCAT 60
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      CACACACCTCCTCCTCCTCCTCCTCCCCCCGCGCCGCCGTCATCCGCGGCCTTACCGGCG 120
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      ACCGACGCGGCCGCCGCGTCGCCCTCCCGCCGCCGCCGCCGCCGCCTCCGACGACGGGTT 180
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      TCCAAACGGATCCGGTGGAATTCCATCCCTCTCGAGCTTAGCGAGGGGGGAGAGAGAAGA 240
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      GGAAGAAAGTGAGGGGAAAAAAGCTTCACAAGAATACGCGCACCACGCATGGGGATCCGA 300
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      GTCGGGAGGTAGACGGAGGGGCGAGATCCGGCGAGGCGGAGAGCGGGAGGGGATTGTCGC 360
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      GTGGTTTTTGGTTGCTCCCCCCTACCGCCAGCTCCGGCGATCCCGACCACCCACCGGCGA 420
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      CGATGAGCGGCGGCGGCGGAGGAGGCGGAGGCGGAGGAGGAGGAAGCCCCAACAACACGG 480
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      AATGGCGCTTCAACCAGACGCTCCGCAACGTGCAAGGAATGCTCAAAGGGCGGAGCTTTC 540
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      CTGGGAAGGTCTTGCTGACCCGAAGATCAGAACCTCTTTCACCTCCTGAATACTCCCCGC 600
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      GCTATGAGAATGATCGTGATGAATACGAACAGAATGAAGGCTCACAAGAAGGAAAAGGGC 660
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      AAGCATCTGGAAATACAGCTGATAGTATGAGTGCAAAGAAATCAAATCCTCCATCAACAA 720
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      GTAGCACCAATTCATTACCAGATGCCCAAGGATTAGTTTCTGGGGCTAGAGCTACAGATT 780
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      CTGCACGAATTGCTAAATTCACGAACGAACTATCTAGGCCAGCTGTTATATTAGACAAGT 840
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      TGCGGGAACTGTCTTGGAGTGGTGTTCCACCTTATATGCGACCTAATATATGGAGACTTC 900
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      TTCTGGGATATGCACCACCTAATGCAGATAGAAGAGAAGGTGTTCTGACGAGGAAAAGAC 960
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      TTGAGTACGTTGAATGTGTTTCTCAATACTATGATATTCCTGATACTGAACGCTCTGATG 1020
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      AAGAGATTAATATGCTTCGACAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTTA 1080
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      CCTTTTTCCAGCACCCTCAAATTCAGAAATCTCTGGAGCGCATTTTGTATACATGGGCCA 1140
consensus_11855#1      ------------------------------------------------------------
                                                                                   

consensus_11855#0      TCCGTCATCCAGCAAGTGGTTATGTTCAAGGAATAAACGACCTTCTTACACCATTCTTGG 1200
consensus_11855#1      -------------------------------AATAAACGACCTTCTTACACCATTCTTGG 29
                                                      *****************************

consensus_11855#0      TCGTATTCTTATCAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTT 1260
consensus_11855#1      TCGTATTCTTATNAGAGCATCTAGAGGGCAACATGGACACCTGGTCCATGGAAAAGCTTT 89
                       ************ ***********************************************

consensus_11855#0      CTCCACAGGATGTTTCTAATATTGAAGCGGACTGTTATTGGTGTCTTTCAAAGTTTCTCG 1320
consensus_11855#1      CTCCACAGGACGTTTCTAATATTGAAGCGGACTGTTATTGGTGTCTTTCAAAGTTTCTCG 149
                       ********** *************************************************

consensus_11855#0      ATGGTATGCAAGACCATTACACCTTTGCTCAACCAGGAATTCAGCGCCTTGTTTTCAGGT 1380
consensus_11855#1      ATGGTATGCAAGACCATTACACCTTTGCTCAACCAGGAATTCAGCGCCTTGTTTTCAGGT 209
                       ************************************************************

consensus_11855#0      TGAAAGAACTTGTTCATCGTATAGATGAACCTGTGTCAAAGCACATGGAGGAACAAGGAT 1440
consensus_11855#1      TGAAAGAACTTGTTCATCGTATAGATGAACCTGTTTCAAAGCACATGGAGGAACAAGGAT 269
                       ********************************** *************************

consensus_11855#0      TGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTT 1500
consensus_11855#1      TGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTT 329
                       ************************************************************

consensus_11855#0      TTCATCTTGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACC-GGAT 1559
consensus_11855#1      TTCATCTTGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCCGGAT 389
                       ******************************************************* ****

consensus_11855#0      TTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTT 1619
consensus_11855#1      TTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTCAGACAAGCTGAAGAAACTT 449
                       ************************************************************

consensus_11855#0      GATTTTCAAGAGATGG-TCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCA 1678
consensus_11855#1      GATTTTCAAGAGATGGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCA 509
                       **************** *******************************************

consensus_11855#0      TGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGCACACAATGTTCAAAAGCTCGCC 1738
consensus_11855#1      TGAGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGCACACAATGTTCAAAAGCTCGCC 569
                       ************************************************************

consensus_11855#0      AAGTCACCTCGCCAGCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTT- 1797
consensus_11855#1      AAGTCACCTCGCCAGCTAGGATACCCGATAATCATATCTGTAATCTATGACCTGATTTTT 629
                       *********************************************************** 

consensus_11855#0      -GATGTACTCTAGACTTG-TCCCCTTTGGGGAAGGAACCATGAGGAGACTTCTTTTG-TT 1854
consensus_11855#1      GGATGGACTCTAGACTTGGTCCCCTTTGGGGAAGGAACCATGAGGAGACTTCTTTTGGTT 689
                        **** ************ ************************************** **

consensus_11855#0      TTCAGTGCATACTAT-CAATTGTAACACTACCCCCAATCTGTATATTTTACTTACAGATT 1913
consensus_11855#1      TTCAGTGCATACTATTCAATTGTAACACTACCCCCAATCTGNATATTTTACTTACAGATT 749
                       *************** ************************* ******************

consensus_11855#0      ATTATCAATGATGATGAATAG-ATGGCATTCAATTTGTGTATTAAAAAAAAAAAAAAAA 1971
consensus_11855#1      ATTATCAATGATGATGAATAGGATGGCATTCAA----------AAAAAAAAAAA----- 793
                       ********************* ***********          ***********     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)