Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11857 cluster # 11857       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11857#0 length = 1751 sequences # 8  
consensus_11857#1 length = 685 sequences # 1  

consensusID : consensus_11857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1751
fasta sequence
                              [CGACCGACCGCCACACCACCACCCCCCACCCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCCACATCCCCATCGTCTCTCACCGC-GTTGCTGCTGCTGCTGCCGCCTC-GGCCACCGCGCGCCC-GCCCGCGCGTCGCACGCAGCTTCTTCCTCTTCTTCTTCTTCCCCACCCTCTCCACCCGATGCGGCGGTCGGCGCCGCGCTGCTGCTGCTGATGCGGGCGGTGGTGAAGAGGCGACGAGGGGGAGAGCGCGGGCGCTGCTGCGGCTATTGGAGATCCGGGGCTTCGTGCGATTAGTGGGGTCGTGTGACCCCACGGGACCCAAAGTGGATCCATTTCGACGGGGATGGAATCTGGGAGTGAGTTCTATGCGGGCGAAGGTCTCCAGATCGACCCCAAGTGGCTCATCGACCCAAAGCTTCTCTTTGTTGGGCCACGGATTGGCGAAGGTGCACATGCAAAGGTCTACGAGGGGAAGTACAAGAACCAAAATGTTGCCATCAAGATTGTGCACAAGGGGGACACCCCTGAGGAGATGGTCAAGAGGGAGGGGAGGTTCTTGAGAGAGGTGACTATGCTGTCAAGGGTGCAGCACAAGAACCTTGTCAAGTTTATCGGGGCTTGCCTTGAGCCTGTCATGGTGGTGGTAACTGAGCTACTAGTGGGGGGCTCTTTGCGCAAGTACTTGGTTGGCCTTCGGCCTAGGAGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGAGAACTTGCTGTTGACCGCAGACCAGAGAACAGTCAAGCTTGTTGACCTTGGTTTAGCAAGAGAAGAGACATTAACAGAGATGATGACTGCAGAGACAGGAACATACCGTTGGATGGCTCCAGAGTTGTACAGCACAGTGACATTGA-GGCATGGAGAAAAGAAGCATTACAATCATAAAGTAGACGTTTATAGCTTTGCAATTGTGTTATGGGAACTCCTTCACAATAGACTGCCCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAGAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGGCTCCGCCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTCTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTGCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGACAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTAATAATCCGCATTCATCAGTTTACAAAAGA]

[+] EMBL AK067412             [CGACCGACCGCCACACCACCACCCCCCACCCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCCACATCCCCATCGTCTCTCACCGC GTTGCTGCTGCTGCTGCCGCCTC GGCCACCGCGCGCCC GCCCGCGCGTCGCACGCAGCTTCTTCCTCTTCTTCTTCTTCCCCACCCTCTCCACCCGATGCGGCGGTCGGCGCCGCGCTGCTGCTGCTGATGCGGGCGGTGGTGAAGAGGCGACGAGGGGGAGAGCGCGGGCGCTGCTGCGGCTATTGGAGATCCGGGGCTTCGTGCGATTAGTGGGGTCGTGTGACCCCACGGGACCCAAAGTGGATCCATTTCGACGGGGATGGAATCTGGGAGTGAGTTCTATGCGGGCGAAGGTCTCCAGATCGACAGCAAGTGGCTCATCGACCCAAAGCTTCTCTTTGTTGGGCCACGGATTGGCGAAGGTGCACATGCAAAGGTCTACGAGGGGAAGTACAAGAACCAAAATGTTGCCATCAAGATTGTGCACAAGGGGGACACCCCTGAGGAGATGGTCAAGAGGGAGGGGAGGTTCTTGAGAGAGGTGACTATGCTGTCAAGGGTGCAGCACAAGAACCTTGTCAAGTTTATCGGGGCTTGCCTTGAGCCTGTCATGGTGGTGGTAACTGAGCTACTAGTGGGGGGCTCTTTGCGCAAGTGCTTGGTTGGCCTTCGGCCTAGGAGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGAGAACTTGCTGTTGACCGCAGACCAGAGAACAGTCAAGCTTGTTGACCTTGGTTTAGCAAGAGAAGAGACATTAACAGAGATGATGACTGCAGAGACAGGAACATACCGTTGGATGGCTCCAGAGTTGTACAGCACAGTGACATTGA GGCATGGAGAAAAGAAGCATTACAATCATAAAGTAGACGTTTATAGCTTTGCAATTGTGTTATGGGAACTCCTTCACAATAGACTGCCCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAGAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGGCTCCGCCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTCTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTGCTAGTCAGTCCACCCCTCTTTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGACAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTAATAATCCGCATTCATCAGTTTtct     ]
[+] EMBL AU172975             [                    ACCCCCCACCCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCCACATCCCCATCGTCTCTCACCGCAGTTGCTGCTGCTGCTGCCGCCTCAGGCCACCGCGCGCCCAGCCCGCGCGTCGCACGCAGCTTCTTCCTCTTCTTCTTCTTCCCCACCCTCTCCACCCGATGCGGCGGTCGGCGCCGCGCTGCTGCTGCTGATGCGGGCGGTGGTGAAGAGGCGACGAGGGGGAGAGCGCGGGCGCTGCTGCGGCTATTGGAGATCCGGGGCTTCGTGCGATTAGTGGGGTCGTGTGACCCCACGGGACCCAAAGTGGATCCATTTCGACGGGGATGGAATCTGGGAGTGAGTTCTATGCGGGCGAAGGTCTCCAGATCGACCCCAAGTGGCTCATCGACCCAAAGCTTCTCTTTGTTGGGCCACGGATTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB677259             [                                                                                         GCTGCTCTTGCTGCCGCCTC GGCCACCGCGCGCCC GCCCGCGCGTCGCACGCAGCTTCTTCCTCTTCTTCTTCTTCCCCACCCTCTCCACCCGATGCGGCGGTCGGCGCCGCGCTGCTGCTGCTGATGCGGGCGGTGGTGAAGAGGCGACGAGGGGGAGAGCGCGGGCGCTGCTGCGGCTATTGGAGATCCGGGGCTTCGTGCGATTAGTGGGGTCGTGTGACCCCACGGGACCCAAAGTGGATCCATTTCGACGGGGATGGAATCTGGGAGTGAGTTCTATGCGGGCGAAGGTCTCCAGATCGACCCCAAGTGGCTCATCGACCCAAAGCTTCTCTTTGTTGGGCCACGGATTGGCGAAGGTGCACATGCAAAGGTCTACGAGGGGAAGTACAAGAACCAAAATGTTGCCATCAAGATTGTGCACAAGGGGGACACCCCTGAGGAGATGGTCAAGAGGGAGGGGAGGTTCTTGAGAGAGGTGACTATGCTGTCAAGGGTGCAGCACAAGAACCTTGTCAAGTTTATCGGGGCTTGCCTTGAGCCTGTCATGGTGGTGGTAACTGAGCTACTAGTGGGGGGCTCTTTGCGCAAGTACTTGGTTGGCCTTCGGCCTAGGAGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGAGAACTTGCTGTTGACCGCAGACCAGAGAACAGTCAAGCTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA999665             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGGTGCAGCACAAGAACCTTGTCAAGTTTATCGGGGCTTGCCTTGAGCCTGTCATGGTGGTGGTAACTGAGCTACTAGTGGGGGGCTCTTTGCGCAAGTACTTGGTTGGCCTTCGGCCTAGGAGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB669239             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAACATACCGTTGGATGGCTCCAGAGTTGTACAGCACAGTGACA TGAGGGCATGGAGAAAAGAAGCATTACAATCATAAAGTAGACGTTTATAGCTTTGCAATTGTGTTATGGGAACTCCTTCACAATAGACTGCCCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAGAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGGCTCCGCCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTCTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTGCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGAGGACAAGTTATTCAATGTCTAAACTGCGCCCGCTAATaaaaaga                               ]
[+] EMBL CB674363             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TACAATCATAAAGTAGACGTTTATAGCTTTGCAATTGTGTTATGGGAACTCCTTCACAATAGACTGCCCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAGAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGGCTCCGCCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTCTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTGCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGACAAGTTATTCAATGTCTAAACTGCGCCCG                                           ]
[-] EMBL CB674364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GACGTTTATAGCTTTGCAATTGTGTTATGGGAACTCCTTCACAATAGACTGCCCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAGAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGGCTCCGCCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTCTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTGCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGACAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTAATAATCCGCATTCATCAAAAAAAAAAAGA]
[+] EMBL BI797914             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTAG ACTGTTG TTCTGCTAGTCAGTCCACCCCTCTCTTCTTCTGACATG TTAACATACCGGCAGGAT AATCGAGTAAGC TTTGACTCCTGCTATCAGTGATG AAATAGTTCT TCGTATATTTTCGGTGGACAAGTTATTCAAGGTCT AACTGCG CCGCTCATCGTATAGTAAT ATCCGCATTCATCAGTTTccca    ]


>consensus_11857#0 CGACCGACCGCCACACCACCACCCCCCACCCCTCTTCTCTCTCTCTCTCTCTCTCTCTCT CCACATCCCCATCGTCTCTCACCGCGTTGCTGCTGCTGCTGCCGCCTCGGCCACCGCGCG CCCGCCCGCGCGTCGCACGCAGCTTCTTCCTCTTCTTCTTCTTCCCCACCCTCTCCACCC GATGCGGCGGTCGGCGCCGCGCTGCTGCTGCTGATGCGGGCGGTGGTGAAGAGGCGACGA GGGGGAGAGCGCGGGCGCTGCTGCGGCTATTGGAGATCCGGGGCTTCGTGCGATTAGTGG GGTCGTGTGACCCCACGGGACCCAAAGTGGATCCATTTCGACGGGGATGGAATCTGGGAG TGAGTTCTATGCGGGCGAAGGTCTCCAGATCGACCCCAAGTGGCTCATCGACCCAAAGCT TCTCTTTGTTGGGCCACGGATTGGCGAAGGTGCACATGCAAAGGTCTACGAGGGGAAGTA CAAGAACCAAAATGTTGCCATCAAGATTGTGCACAAGGGGGACACCCCTGAGGAGATGGT CAAGAGGGAGGGGAGGTTCTTGAGAGAGGTGACTATGCTGTCAAGGGTGCAGCACAAGAA CCTTGTCAAGTTTATCGGGGCTTGCCTTGAGCCTGTCATGGTGGTGGTAACTGAGCTACT AGTGGGGGGCTCTTTGCGCAAGTACTTGGTTGGCCTTCGGCCTAGGAGCCTGGAGCCTCG TGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGC GATCATTCATCGTGATCTTAAACCTGAGAACTTGCTGTTGACCGCAGACCAGAGAACAGT CAAGCTTGTTGACCTTGGTTTAGCAAGAGAAGAGACATTAACAGAGATGATGACTGCAGA GACAGGAACATACCGTTGGATGGCTCCAGAGTTGTACAGCACAGTGACATTGAGGCATGG AGAAAAGAAGCATTACAATCATAAAGTAGACGTTTATAGCTTTGCAATTGTGTTATGGGA ACTCCTTCACAATAGACTGCCCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGC TGCTTTCAAGAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCT AACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAAT GCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGGCTCCGCCTCGGACGTT CAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTC TCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTT TTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAAA TATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGTC CCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTG CTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAG TAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGAC AAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTAATAATCCGCATTCATCAG TTTACAAAAGA



consensusID : consensus_11857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence
                              [NCTTATGCTGCTGCTTTCAAGAACATTAGNCCTAGTGCAGATAAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGCTCCGCCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTCTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTGCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGACAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTNATAATCCGNNTTNNTCAAAAAAAAAAAAAAAA]

[+] EMBL AU030363             [NCTTATGCTGCTGCTTTCAAGAACATTAGNCCTAGTGCAGATAAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGCTCCGCCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTCTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTGCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGACAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTNATAATCCGNNTTNNTCAAAAAAAAAAAAAAAA]


>consensus_11857#1 NCTTATGCTGCTGCTTTCAAGAACATTAGNCCTAGTGCAGATAAATTTGCCTGAGGAGCT ATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCA GATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGCTCCG CCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCC CTAATGGCTTCTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCA AGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTG GAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCC GGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAAC TGTTGTTTCTGCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAG GATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATAT TTTCGGTGGACAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTNATAATCC GNNTTNNTCAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11857#0      CGACCGACCGCCACACCACCACCCCCCACCCCTCTTCTCTCTCTCTCTCTCTCTCTCTCT 60
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      CCACATCCCCATCGTCTCTCACCGCGTTGCTGCTGCTGCTGCCGCCTCGGCCACCGCGCG 120
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      CCCGCCCGCGCGTCGCACGCAGCTTCTTCCTCTTCTTCTTCTTCCCCACCCTCTCCACCC 180
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      GATGCGGCGGTCGGCGCCGCGCTGCTGCTGCTGATGCGGGCGGTGGTGAAGAGGCGACGA 240
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      GGGGGAGAGCGCGGGCGCTGCTGCGGCTATTGGAGATCCGGGGCTTCGTGCGATTAGTGG 300
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      GGTCGTGTGACCCCACGGGACCCAAAGTGGATCCATTTCGACGGGGATGGAATCTGGGAG 360
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      TGAGTTCTATGCGGGCGAAGGTCTCCAGATCGACCCCAAGTGGCTCATCGACCCAAAGCT 420
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      TCTCTTTGTTGGGCCACGGATTGGCGAAGGTGCACATGCAAAGGTCTACGAGGGGAAGTA 480
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      CAAGAACCAAAATGTTGCCATCAAGATTGTGCACAAGGGGGACACCCCTGAGGAGATGGT 540
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      CAAGAGGGAGGGGAGGTTCTTGAGAGAGGTGACTATGCTGTCAAGGGTGCAGCACAAGAA 600
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      CCTTGTCAAGTTTATCGGGGCTTGCCTTGAGCCTGTCATGGTGGTGGTAACTGAGCTACT 660
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      AGTGGGGGGCTCTTTGCGCAAGTACTTGGTTGGCCTTCGGCCTAGGAGCCTGGAGCCTCG 720
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      TGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGC 780
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      GATCATTCATCGTGATCTTAAACCTGAGAACTTGCTGTTGACCGCAGACCAGAGAACAGT 840
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      CAAGCTTGTTGACCTTGGTTTAGCAAGAGAAGAGACATTAACAGAGATGATGACTGCAGA 900
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      GACAGGAACATACCGTTGGATGGCTCCAGAGTTGTACAGCACAGTGACATTGAGGCATGG 960
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      AGAAAAGAAGCATTACAATCATAAAGTAGACGTTTATAGCTTTGCAATTGTGTTATGGGA 1020
consensus_11857#1      ------------------------------------------------------------
                                                                                   

consensus_11857#0      ACTCCTTCACAATAGACTGCCCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGC 1080
consensus_11857#1      -------------------------------------------------NCTTATGCTGC 11
                                                                         **********

consensus_11857#0      TGCTTTCAAGAACATTAGACCTAGTGCAGATAA-TTTGCCTGAGGAGCTATCAGAAATCC 1139
consensus_11857#1      TGCTTTCAAGAACATTAGNCCTAGTGCAGATAAATTTGCCTGAGGAGCTATCAGAAATCC 71
                       ****************** ************** **************************

consensus_11857#0      TAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAA 1199
consensus_11857#1      TAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGATCGTACAAA 131
                       ************************************************************

consensus_11857#0      TGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGGCTCCGCCTCGGACGT 1259
consensus_11857#1      TGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTG-CTCCGCCTCGGACGT 190
                       ******************************************** ***************

consensus_11857#0      TCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTT 1319
consensus_11857#1      TCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTT 250
                       ************************************************************

consensus_11857#0      CTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCT 1379
consensus_11857#1      CTCGAGGCGACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCT 310
                       ************************************************************

consensus_11857#0      TTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAA 1439
consensus_11857#1      TTTTCTGCTTCAGCCAGTGCTATTAGCACAGAACAAAGGAAACTCCCCTGGAGGATGCAA 370
                       ************************************************************

consensus_11857#0      ATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGT 1499
consensus_11857#1      ATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGCCCGGCGGCGAGT 430
                       ************************************************************

consensus_11857#0      CCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCT 1559
consensus_11857#1      CCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCT 490
                       ************************************************************

consensus_11857#0      GCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGA 1619
consensus_11857#1      GCTAGTCAGTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGA 550
                       ************************************************************

consensus_11857#0      GTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGA 1679
consensus_11857#1      GTAAGCTTTTGACTCCTGCTATCAGTGATGAAAATAGTTCTGTCGTATATTTTCGGTGGA 610
                       ************************************************************

consensus_11857#0      CAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTAATAATCCGCATTCATCA 1739
consensus_11857#1      CAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTNATAATCCGNNTTNNTCA 670
                       ****************************************** ********  **  ***

consensus_11857#0      GTTTACAAAAGA--- 1751
consensus_11857#1      AAAAAAAAAAAAAAA 685
                           * **** *   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)