These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1726 fasta sequence [CCGCTTCCCCTTCACAATTCAATCCCGCCGCCGACGCCCCCTCCTCCGAAATGGCGTGACGACCTCCGCCCCATCCCCCAAATCCCTCACCTCCGCACTTCAAAATTCCCCACCTCCACTGCCGCTATCCTCCCGCAACCTCACCAAATCCGGCGAATTCCCCCATCGACCAAACCCTAACCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGTGCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGGCGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCCGGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCGTACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTTCAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGACTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCGCGTCCGCGTCCCCGGCCCCGCCGCTGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACAGGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCAGGAGCGTGCTGCCGCTGTGGAGCAAGGCGAGCCTGCGGTTCCAGTGGGGGCTGCGCGTGCCGCCCGAGCTGAAGGCCGCCCTCGCCGACGACGGGTACGGCCGCAAGGCGGGTAACCTGGCCACCAACAAGTTGCCGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCGATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCGTCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGGACCTGCGTGCCG-AGATCGGTGG-AAATAGAG-CCGCCTCAATG-CCCGGT--AAAGGCGACG-CCCG-AAGGATGCCGTCGT-CCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACGCTTTAGTTTTCCAGATCATCCTTATTACAATTTCAATCCATATGATCATTATCTCTGTGCTTGTACCTTTGATCAAAGTTCCTAAACAAAAAATTGATGATAAACAGAGTGCCAGCTTTTGCATTCGGCATGAATGAATTTGA] [+] EMBL CB673284 [CCGCTTCCCCTTCACAATTCAATCCCGCCGCCGACGCCCCCTCCTCCGAAATGGCGTGACGACCTCCGCCCCATCCCCCAAATCCCTCACCTCCGCACTTCAAAATTCCCCACCTCCACTGCCGCTATCCTCCCGCAACCTCACCAAATCCGGCGAATTCCCCCATCGACCAAACCCTAACCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGTGCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGGCGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCCGGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCGTACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTTCAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGACTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCGCGTCCGCGTCCCCGGCCCCGCCGCTGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACAGGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCNAGAGCG ] [+] EMBL AK062257 [ ACCTCCGCACTTCAAAATTCCCCACCTCCACTGCCGCTATCCTCCCGCAACCTCACCAAATCCGGCGAATTCCCCCATCGACCAAACCCTAACCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGTGCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGGCGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCCGGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCGTACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTTCAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGACTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCGCGTCCGCGTCCCCGGCCCCGCCGCTGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACAGGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCAGGAGCGTGCTGCCGCTGTGGAGCAAGGCGAGCCTGCGGTTCCAGTGGGGGCTGCGCGTGCCGCCCGAGCTGAAGGCCGCCCTCGCCGACGACGGGTACGGCCGCAAGGCGGGTAACCTGGCCACCAACAAGTTGCCGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCGATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCGTCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGGACCTGCGTGCCG AGATCGGTGG AAATAGAG CCGCCTCAATG CCCGGT AAAGGCGACG CCCG AAGGATGCCGTCGT CCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTAT ] [+] EMBL AK064834 [ CAAATCCGGCGAATTCCCCCATCGACCAAACCCTAACCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGTGCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGGCGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCCGGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCGTACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTTCAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGACTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCGCGTCCGCGTCCCCGGCCCCGCCGCTGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACAGGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCAGGAGCGTGCTGCCGCTGTGGAGCAAGGCGAGCCTGCGGTTCCAGTGGGGGCTGCGCGTGCCGCCCGAGCTGAAGGCCGCCCTCGCCGACGACGGGTACGGCCGCAAGGCGGGTAACCTGGCCATCAACAAGTTGCCGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCGATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCGTCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGGACCTGCGTGCCG AGATCGGTGG AAATAGAG CCGCCTCAATG CCCGGT AAAGGCGACG CCCG AAGGATGCCGTCGT CCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACGCTTTAGTTTTCCAGATCATCCTTATTACAATTTCAATCCATATGATCATTATCTCTGTGCTTGTACCTTTGATCAAAGTTCCTAAACAAAAAATTGATGATAAACAGAGTGCCAGCTTTTGCATTCGGCATGAATGAATTTGA] [-] EMBL CB673285 [ TTGCCGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCGATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCGTCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGGACCTGCGTGCCG AGATCGGTGG AAATAGAG CCGCCTCAATG CCCGGT AAAGGCGACG CCCG AAGGATGCCGTCGT CCTTGGCACCACCACCACCACAACCATTCCTGGGGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCCCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACGCTT ] [+] EMBL BI813344 [ gcCCGAAGATCGGTGGCCAATAGAGCCCGCCTCAATGCCCCGGTTAAAAGGCGACGCCCCGAAAGGAATCCGTCGTCCCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTC ATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCC ATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACGCTTTAGTTTTCCAGATCATCCTTATTAC ATTTCAATCCAaaaaaaa ] consensusID : consensus_11865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1406 fasta sequence [CCAATCCATCCAGCCCAAGTCCATCTCCCACCCTTCCACCACTACCCACATCGTCTCGCCGCCGTCGCCGCCGCCGGCGTGACCTCCGCCGCAAATCCGCAGCCCCCACCACCGCCACCCAAAGCTCTCATCCCGCATGAAGGCGTCGATCAAGTTCCGCGACGACGACCGGCCGCTGCTGCGTGCCAGGGTGCCGATCAGGGTGCTCGGGCTGCCGCTCCACTCCGGCCTCTCCGCCGGCGGCGACCCGCGCGAGCTCCGCCTCGACCTCTCCACCGCCTTCTCCTTCGGCCCGGCGATCCGCCTCTCGTACCGCCCCAATGACCCCGCCCTCCCCTTCTCCGTCTCCGTCCGCGCCGGCGTCGGGCCCCTCGGCTCCCCCGCCCGCGCGCCCTTCTCCCTCGCCGCCGAGTTCAACCTCCTCTCCGGCAACCCCGGATCCCCCGCCTTCTTCCTCCTCCTCAAGCCGCGCCTCGGCGACTTCTCGCTCTCCCACACCCTCCGCTCCTCGCCGCATCCCGGTAATAAGGTCGGGGAGGTCTCCGATGGCGATGGCCATGGGCGCGAGGTGAACTACAAGGCGTTCTCGTTCGCGGCGGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGGCTCACCACGAGGAGCGTGCTCCCGCTGTGGGGAAGGGCGAGCCTGCGGTTCAGCTGGGGGCTGCGCGCGCCGCCGGAGCTGCAGGCGGCGCTCGCCGCCGACGACGCCATGGTCGGTGCCAGCCGCAGCCGCAAGGGCGGCGCGCGGGTTCCGGTCAGCAAGATGCCCCTGCTGGTCATTGACAAGATCTCCATCGAACAGTCACCTCGCGCCGCCGACAAAACGCGCGGCAACGCGGATTCCTCGCCACCAGCGCCGGCGATTGCTGCCGCCGCCGACGCCGATGCAGCGGACGGCACGGGACGCGGCGGCGAGGGGTTCTCGCTGGTGAGGCGGCAGCTGGAGGCGCTGAACGCGGAGAGCGGGATGCTGCGCCGCGCCGTGGAGGACCTGCGCGCCGAGGTCGGGAGCCGCAGGGCGGCGGTGTCCACCGCCGGCGCACCCGACACCTGGAGGACGCCGCCGGCGCCGCCACAACCAGCACAGCCATACCACTACTCATCTCCGGTGAAGCCGGATCGCCGGGGCAGTGGCAAGGACATGGCCGCAGCCGAGAACGCCACGAAGCCTTCGTCGGATGAGCTTGGCGACGAGTTGAAGAGGGCATTGGAGGCGCGGCTGAGGTGAGAGCTTTGGCATCCAGCCATTGCCAAGAGCTCCACTCCACCACCACGGCTAACCAACCTCACTGTCCGGTGTTGCTGGTACATGCTAGCTTCAGGCTTGTATAATTGAGCATTTCCAATCAAGAAATCATCAG] [+] EMBL AK072063 [CCAATCCATCCAGCCCAAGTCCATCTCCCACCCTTCCACCACTACCCACATCGTCTCGCCGCCGTCGCCGCCGCCGGCGTGACCTCCGCCGCAAATCCGCAGCCCCCACCACCGCCACCCAAAGCTCTCATCCCGCATGAAGGCGTCGATCAAGTTCCGCGACGACGACCGGCCGCTGCTGCGTGCCAGGGTGCCGATCAGGGTGCTCGGGCTGCCGCTCCACTCCGGCCTCTCCGCCGGCGGCGACCCGCGCGAGCTCCGCCTCGACCTCTCCACCGCCTTCTCCTTCGGCCCGGCGATCCGCCTCTCGTACCGCCCCAATGACCCCGCCCTCCCCTTCTCCGTCTCCGTCCGCGCCGGCGTCGGGCCCCTCGGCTCCCCCGCCCGCGCGCCCTTCTCCCTCGCCGCCGAGTTCAACCTCCTCTCCGGCAACCCCGGATCCCCCGCCTTCTTCCTCCTCCTCAAGCCGCGCCTCGGCGACTTCTCGCTCTCCCACACCCTCCGCTCCTCGCCGCATCCCGGTAATAAGGTCGGGGAGGTCTCCGATGGCGATGGCCATGGGCGCGAGGTGAACTACAAGGCGTTCTCGTTCGCGGCGGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGGCTCACCACGAGGAGCGTGCTCCCGCTGTGGGGAAGGGCGAGCCTGCGGTTCAGCTGGGGGCTGCGCGCGCCGCCGGAGCTGCAGGCGGCGCTCGCCGCCGACGACGCCATGGTCGGTGCCAGCCGCAGCCGCAAGGGCGGCGCGCGGGTTCCGGTCAGCAAGATGCCCCTGCTGGTCATTGACAAGATCTCCATCGAACAGTCACCTCGCGCCGCCGACAAAACGCGCGGCAACGCGGATTCCTCGCCACCAGCGCCGGCGATTGCTGCCGCCGCCGACGCCGATGCAGCGGACGGCACGGGACGCGGCGGCGAGGGGTTCTCGCTGGTGAGGCGGCAGCTGGAGGCGCTGAACGCGGAGAGCGGGATGCTGCGCCGCGCCGTGGAGGACCTGCGCGCCGAGGTCGGGAGCCGCAGGGCGGCGGTGTCCACCGCCGGCGCACCCGACACCTGGAGGACGCCGCCGGCGCCGCCACAACCAGCACAGCCATACCACTACTCATCTCCGGTGAAGCCGGATCGCCGGGGCAGTGGCAAGGACATGGCCGCAGCCGAGAACGCCACGAAGCCTTCGTCGGATGAGCTTGGCGACGAGTTGAAGAGGGCATTGGAGGCGCGGCTGAGGTGAGAGCTTTGGCATCCAGCCATTGCCAAGAGCTCCACTCCACCACCACGGCTAACCAACCTCACTGTCCGGTGTTGCTGGTACATGCTAGCTTCAGGCTTGTATAATTGAGCATTTCCAATCAAGAAATCATCA ] [+] EMBL AK106031 [ CCAAGTCCATCTCCCACCCTTCCACCACTACCCACATCGTCTCGCCGCCGTCGCCGCCGCCGGCGTGACCTCCGCCGCAAATCCGCAGCCCCCACCACCGCCACCCAAAGCTCTCATCCCGCATGAAGGCGTCGATCAAGTTCCGCGACGACGACCGGCCGCTGCTGCGTGCCAGGGTGCCGATCAGGGTGCTCGGGCTGCCGCTCCACTCCGGCCTCTCCGCCGGCGGCGACCCGCGCGAGCTCCGCCTCGACCTCTCCACCGCCTTCTCCTTCGGCCCGGCGATCCGCCTCTCGTACCGCCCCAATGACCCCGCCCTCCCCTTCTCCGTCTCCGTCCGCGCCGGCGTCGGGCCCCTCGGCTCCCCCGCCCGCGCGCCCTTCTCCCTCGCCGCCGAGTTCAACCTCCTCTCCGGCAACCCCGGATCCCCCGCCTTCTTCCTCCTCCTCAAGCCGCGCCTCGGCGACTTCTCGCTCTCCCACACCCTCCGCTCCTCGCCGCATCCCGGTAATAAGGTCGGGGAGGTCTCCGATGGCGATGGCCATGGGCGCGAGGTGAACTACAAGGCGTTCTCGTTCGCGGCGGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGGCTCACCACGAGGAGCGTGCTCCCGCTGTGGGGAAGGGCGAGCCTGCGGTTCAACTGGGGGCTGCGCGCGCCGCCGGAGCTGCAGGCGGCGCTCGCCGCCGACGACGCCATGGTCGGTGCCAGCCGCAGCCGCAAGGGCGGCGCGCGGGTTCCGGTCAGCAAGATGCCCCTGCTGGTCATTGACAAGATCTCCATCGAACAGTCACCTCGCGCCGCCGACAAAACGCGCGGCAACGCGGATTCCTCGCCACCAGCGCCGGCGATTGCTGCCGCCGCCGACGCCGATGCAGCGGACGGCACGGGACGCGGCGGCGAGGGGTTCTCGCTGGTGAGGCGGCAGCTGGAGGCGCTGAACGCGGAGAGCGGGATGCTGCGCCGCGCCGTGGAGGACCTGCGCGCCGAGGTCGGGAGCCGCAGGGCGGCGGTGTCCACCGCCGGCGCACCCGACACCTGGAGGACGCCGCCGGCGCCGCCACAACCAGCACAGCCATACCACTACTCATCTCCGGTGAAGCCGGATCGCCGGGGCAGTGGCAAGGACATGGCCGCAGCCGAGAACGCCACGAAGCCTTCGTCGGATGAGCTTGGCGACGAGTTGAAGAGGGCATTGGAGGCGCGGCTGAGGTGAGAGCTTTGGCATCCAGCCATTGCCAAGAGCTCCACTCCACCACCACGGCTAACCAACCTCACTGTCCGGTGTTGCTGGTACATGCTAGCTTCAGGCTTGTATAATTGAGCATTTCCAATCAAGAAATCATCAG] consensusID : consensus_11865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [AGAAAACCTGATGATTTCTTGATTGGAAATGCTCAATTATACAAGCCTGAAGCTAGCATGTACCAGCAACACCGGACAGTGAGGTTGGTTAGCCGTGGTGGTGGAGTGGAGCTCTTGGCAATGGCTGGATGCCAAAGCTCTCACCTCAGCCGCGCCTCCAATGCCCTCTTCAACTCGTCGCCAAGCTCATCCGACGAAAGCTTCGTGGCGTTCTCGGCTGCTGCCATGTCTTGCCACTGCCCCGGCATCCGGCTCCCCCTGAAATTTAATTATNGNNTTCTGGCCCTTCCNNTTNCNTGNCNNCTTCTTTTTNTTCCTTCTTTCTNNTTTGTCCCCTCTCTANNCNNTCNTTNTTCNTTTTCTTCCTNCCCCTTTCTCTTCTTTTCCTCTTCTTTNTTNTCCCTCTTCNTCCTTCNTTCNTCTNTCTTTTTCCTCCTCTTCTNTCTCTTTTNTTNTCCNNNTTTTCNCTTCTNNNNNNGNCNNNNTCNCTCCNTGCNTTNTCTNCTCTTCTTCTTCTTCTTTTNCCNCNTTTCCTCTCNCTTTNNTNTCTTNNNTTCNCTTTCATCTTTCTCTNNTTTANCTCNCTCCTCTCNNTTCCTNTCNTTTCNTTNCNCTCTCTNNNCCTTCTCTNTCCCCTT] [+] EMBL BE229221 [AGAAAACCTGATGATTTCTTGATTGGAAATGCTCAATTATACAAGCCTGAAGCTAGCATGTACCAGCAACACCGGACAGTGAGGTTGGTTAGCCGTGGTGGTGGAGTGGAGCTCTTGGCAATGGCTGGATGCCAAAGCTCTCACCTCAGCCGCGCCTCCAATGCCCTCTTCAACTCGTCGCCAAGCTCATCCGACGAAAGCTTCGTGGCGTTCTCGGCTGCTGCCATGTCTTGCCACTGCCCCGGCATCCGGCTCCCCCTGAAATTTAATTATNGNNTTCTGGCCCTTCCNNTTNCNTGNCNNCTTCTTTTTNTTCCTTCTTTCTNNTTTGTCCCCTCTCTANNCNNTCNTTNTTCNTTTTCTTCCTNCCCCTTTCTCTTCTTTTCCTCTTCTTTNTTNTCCCTCTTCNTCCTTCNTTCNTCTNTCTTTTTCCTCCTCTTCTNTCTCTTTTNTTNTCCNNNTTTTCNCTTCTNNNNNNGNCNNNNTCNCTCCNTGCNTTNTCTNCTCTTCTTCTTCTTCTTTTNCCNCNTTTCCTCTCNCTTTNNTNTCTTNNNTTCNCTTTCATCTTTCTCTNNTTTANCTCNCTCCTCTCNNTTCCTNTCNTTTCNTTNCNCTCTCTNNNCCTTCTCTNTCCCCTT] consensusID : consensus_11865#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CATTCCTGTTGAAGCCAGATCCCCACGGGAACGGCAAGGAGATGGTGGTCAGTGGCCCGAAGCCGGTGTCGAATTAGGCGAGCGAGGAGTTGAAGAAGGCACTGGCGGCTCACCGGAAGTGAAGAAGTATCAGAATTTGATGAAATTGCAACCCCCTGCAATTCTGCAACTTGACATGGCCGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGCTAGGTGCAGTTTCATTCCCCAGGGAAGCAAAAGGAATTCTCATAAGGTGATGTAATAATCTCGCTTTATCTTCCAGGCCGTGGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCCCCATGTATAAACTGGCTCTTTTTTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACAGCTTTAGTTTTCCAGATCATCCTTATCGCAATTTCAATCCATATGATCATTATCTCAATAACAAAAAAGA] [-] EMBL CB667209 [CATTCCTGTTGAAGCCAGATCCCCACGGGAACGGCAAGGAGATGGTGGTCAGTGGCCCGAAGCCGGTGTCGAATTAGGCGAGCGAGGAGTTGAAGAAGGCACTGGCGGCTCACCGGAAGTGAAGAAGTATCAGAATTTGATGAAATTGCAACCCCCTGCAATTCTGCAACTTGACATGGCCGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGCTAGGTGCAGTTTCATTCCCCAGGGAAGCAAAAGGAATTCTCATAAGGTGATGTAATAATCTCGCTTTATCTTCCAGGCCGTGGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCCCCATGTATAAACTGGCTCTTTTTTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACAGCTTTAGTTTTCCAGATCATCCTTATCGCAATTTCAATCCATATGATCATTATCTCAATAACAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11865#0 CCGCTTCCCCTTCACAATTCAATCCCGCCGCCGACGCCCCCTCCTCCGAAATGGCGTGAC 60 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 ------------------------------------------------------------ consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 GACCTCCGCCCCATCCCCCAAATCCCTCACCTCCGCACTTCAAAATTCCCCACCTCCACT 120 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 ------------------------------------------------------------ consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 GCCGCTATCCTCCCGCAACCTCACCAAATCCGGCGAATTCCCCCATCGACCAAACCCTAA 180 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 ------------------------------------------------------------ consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 CCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGT 240 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 ------------------------------------------------------------ consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 GCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGG 300 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 ---------------CCAATCCATCCAGCCCAAGTCCATCTCCCACCCTTCCACCACTAC 45 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 CGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCC 360 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 CCACATCGTCTCGCCGCCGTCGCCGCCGCCGGCGTGACCTCCGCCGCAAATCCGCAGCCC 105 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 GGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCG 420 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 CCACCACCGCCACCCAAAGCTCTCATCCCGCATGAAGGCGTCGATCAAGTTCCGCGACGA 165 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 TACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTT 480 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 CGACCGGCCGCTGCTGCGTGCCAGGGTGCCGATCAGGGTGCTCGGGCTGCCGCTCCACTC 225 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 CAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGA 540 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 CGGCCTCTCCGCCGGCGGCGACCCGCGCGAGCTCCGCCTCGACCTCTCCACCGCCTTCTC 285 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 CTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCG-CGTCCGCGTCCCCGGCCCCGCCGC 599 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 CTTCGGCCCGGCGATCCGCCTCTCGTACCGCCCCAATGACCCCGCCCTCCCCTTCTCCGT 345 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 TGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACA 659 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 CTCCGTCCGCGCCGGCGTCGGGCCCCTCGGCTCCCCCGCCCGCGCGCCCTTCTCCCTCGC 405 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 GGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCG 719 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 CGCCGAGTTCAACCTCCTCTCCGGCAACCCCGGATCCCCCGCCTTCTTCCTCCTCCTCAA 465 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 GCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCAGGAGCGTGCTGCCGC 779 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 GCCGCGCCTCGGCGACTTCTCGCTCTCCCACACCCTCCGCTCCTCGCCGCATCCCGGTAA 525 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 TGTGGAGCAAGGCGAGCCTGCGGTTCCAGTGGGGGCTGCGCGTGCCGCCCGAGCTGAAGG 839 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 TAAGGT-CGGGGAGGTCTCCGATGGCGATGGCCATGGGCGCGAGGTGAACTACAAGGCGT 584 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 CCGCCCTCGCCGACGACGGGTACGGCCGCAAGGCGGGTAACCTGGCCACCAACAAGTTGC 899 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 TCTCGTTCGCGGCGGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGC 644 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 CGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCG 959 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 GGCTCACCACGAGGAGCGTGCTCCCGCTGTGGGGAAGGGCGAGCCTGCGGTTCAGCTGGG 704 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 ATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCG 1019 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 GGCTGCGCGCGCCGCCGGAGCTGCAGGCGGCGCTCGCCGCCGACGACGCCATGGTCGGTG 764 consensus_11865#2 ------------------------------------------------------------ consensus_11865#0 TCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGG 1079 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 CCAGCCGCAGCCGCAAGGGCGGCGCGCGGGTTCCGGTCAGCAAGATGCCCCTGCTGGTCA 824 consensus_11865#2 ----------------AGAAAACCTGATGATTTCTTGATTGGAAATGCTCA-ATTATACA 43 consensus_11865#0 ACCTGCGTGCCGAGATCGGTGGAAATAGAGCCGCCTCAATGCCCGGTAAAGGCGACGCCC 1139 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 TTGACAAGATCTCCATCGAACAGTCACCTCGCGCCGCCGACAAAACGCGCGGCAACGCGG 884 consensus_11865#2 AGCCTGAAGCTAGCATGTACCAGCAACACCGGACAGTGAGGTTGGTTAGCCGTGGTGGTG 103 consensus_11865#0 GAAGGATGCCGTCGTCCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATC 1199 consensus_11865#3 ---------------------------------------CATTCCTGTTGAAGCCAGATC 21 consensus_11865#1 ATTCCTCGCCACCAGCGCCGGCG--ATTGCTGCCGCCGCCGACGCCGATGCAGC--GGAC 940 consensus_11865#2 GAGTGGAGCTCTTGGCAATGGC----TGGATGCCAAAGCTCTCACCTCAGCCGC---GCC 156 * * ** * consensus_11865#0 GCCACGGGA----ACGGCAAGGAGAT---GGTGGACAGTGGACCGAAGCCGGTGTCGAAT 1252 consensus_11865#3 CCCACGGGA----ACGGCAAGGAGAT---GGTGGTCAGTGGCCCGAAGCCGGTGTCGAAT 74 consensus_11865#1 GGCACGGGACGCGGCGGCGAGGGGTTCTCGCTGGTGAGGCGGCAGCTGGAGGCGCTGAAC 1000 consensus_11865#2 TCCAATGCCCTCTTCAACTCGTCGCCAA-GCTCATCCGACGAAAGCTTC--GTGGCGTTC 213 ** * * * * * * * * * * * * * consensus_11865#0 GAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGG-CTCGCCGGAAGTGAAGAAGTATCAG 1311 consensus_11865#3 TAGGCGAGCGAGGAGTTGAAGAAGGCACTGGCGG-CTCACCGGAAGTGAAGAAGTATCAG 133 consensus_11865#1 GCGGAGAGCGGGATGCTGCGCCGCGCCGTGGAGGACCTGCGCGCCGAGGTCGGGAGCCGC 1060 consensus_11865#2 TCGGCTGCTGCCATGTCTTGCCACTGCCCCGGCATCCGGCTCCCCCTGAAATTTAATTAT 273 ** * * * * * * consensus_11865#0 AATTTGCTGAAATTGCAACCCCCTGCA-ATACTGCAACTTGACATGGCTGCTTG-GTTAA 1369 consensus_11865#3 AATTTGATGAAATTGCAACCCCCTGCA-ATTCTGCAACTTGACATGGCCGCTTG-GTTAA 191 consensus_11865#1 AGGGCGGCGGTGT--CCACCGCCGGCGCACCCGACACCTGGAGGACGCCGCCGGCGCCGC 1118 consensus_11865#2 NGNNTTCTGGCCCTTCCNNTTNCNTGNCNNCTTCTTTTTNTTCCTTCTTTCTNNTTTGTC 333 * * * * * consensus_11865#0 AATTTTGCGCTCAATAATACATTTGGTA------GGTGCAGTTTGCTTCCCCAGGGAAGC 1423 consensus_11865#3 AATTTTGCGCTCAATAATACATTTGCTA------GGTGCAGTTTCATTCCCCAGGGAAGC 245 consensus_11865#1 CACAACCAGCACAGCCATACCACTACTCATCTCCGGTGAAGCCGGAT-CGCCGGGGCAGT 1177 consensus_11865#2 CCCTCTCTANNCNNTCNTTNTTCNTTTTCTT---CCTNCCCCTTTCTCTTCTTTTCCTCT 390 * * * * * * consensus_11865#0 AAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGT 1483 consensus_11865#3 AAAAGGAATTCTCATAAGGTGATGTAATAATCTCGCTTTATCTTCCAGGCCGTGGCTTGT 305 consensus_11865#1 GGCAAGGA----CATGGCCGCAGCCGAGAACGCCACGAAGCCTTC------GTCGGATGA 1227 consensus_11865#2 TCTTTNTTNTCCCTCTTCNTCCTTCNTTCNTCTNTCTTTTTCCTCCTCTTCTNTCTCTTT 450 * * ** * consensus_11865#0 GCTAGACTGCTACTAGTAGTAT-TATTTATCTCCAATTCGCCATGTATAAACTCGC-TCT 1541 consensus_11865#3 GCTAGACTGCTACTAGTAGTAT-TATTTATCTCCAATTCCCCATGTATAAACTGGC-TCT 363 consensus_11865#1 GCTTGGCGACGAGTTGAAGAGGGCATTGGAGGCGCGGCTGAGGTGAGAGCTTTGGCATCC 1287 consensus_11865#2 TNTTNTCCNNNTTTTCNCTTCTNNNNNNGNCNNNNTCNCTCCNTGCNTTNTCTNCTCTTC 510 * * * ** * * consensus_11865#0 TTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAAC-GCTTTAGTTTT--CCAGA 1598 consensus_11865#3 TTTTTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACAGCTTTAGTTTT--CCAGA 421 consensus_11865#1 AGCCATTGCCAAGAGCTCCACTCCACCACCACG-GCTAACCAACCTCACTGTC--CGGTG 1344 consensus_11865#2 TTCTTCTTCTTTTNCCNCNTTTCCTCTCNCTTTNNTNTCTTNNNTTCNCTTTCATCTTTC 570 * *** * * * * consensus_11865#0 TCATCCTTA--TTACAATTTCAATCC-ATATGATC-ATTATCTCTGTGCTTGTACCTTTG 1654 consensus_11865#3 TCATCCTTA--TCGCAATTTCAATCC-ATATGATC-ATTATCTCAATAACAAAAAAGA-- 475 consensus_11865#1 TTGCTGGTACATGCTAGCTTCAGGCTTGTATAATTGAGCATTTCCAATCAAGAAATCATC 1404 consensus_11865#2 TCTNNTTTANCTCNCTCCTCTCNNTTCCTNTCNTTTCNTTNCNCTCTCTNNNCCTTCTCT 630 * ** * * * * * * consensus_11865#0 ATCAAAGTTCCTAAACAAAAAATTGATGATAAACAGAGTGCCAGCTTTTGCATTCGGCAT 1714 consensus_11865#3 ------------------------------------------------------------ consensus_11865#1 AG---------------------------------------------------------- 1406 consensus_11865#2 NTCCCCTT---------------------------------------------------- 638 consensus_11865#0 GAATGAATTTGA 1726 consensus_11865#3 ------------ consensus_11865#1 ------------ consensus_11865#2 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||