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Oryza sativa
cluster # 11869 cluster # 11869       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11869#0 length = 1486 sequences # 4  
consensus_11869#1 length = 1332 sequences # 3  
consensus_11869#2 length = 584 sequences # 1  
consensus_11869#3 length = 418 sequences # 1  

consensusID : consensus_11869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1486
fasta sequence
                              [ACTTCCCTTCCCCACCTTCCTCCTCTCCCACCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTCTCTCACGCGCCTCCGCGTCGCCGCATTCGGGGACGCCCACCGCCGCCGGATCCGGCCAGCCTTCCCCCCTCCCCTCCTTTCCCCGGCCGCTCCCCTNCTCGGTAAGATCCGGCGCCGGTTCCATGTCGAGCACCGGCGAGCAGTCGCAGGCGAAGGCGGAGGCCGAGGAGGCGGTGGAGCTCGTGCTGTTCCAGGTCGCTGAGTGCTACGTCTANCTGATACCTNCCAGGAAGACAGCCGCCTCCTACAGGGCTGATGAATGGAACGTC-ACAAGTGGGC-TTGGGAAGGGACTTTCAAGGTTGTCAGCAAAGGAGAAGAGTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTAGGGCATTCCTCAGAGAAGACGAACCACATCCGGTGGAACCTGTTATTGATAGCAGCAGATATTTTGTACTCCGTGTTGAAGAGAATATAGATGGACGTCAGCGCCATGCCTTTATTGGTTTAGGCTTCCGTGAAAGACCTCAAGCATATGATTTCCAAGCTGCTCTGCACGACCATATGAAATATCTAAACAAGAAAAAGACTGCTGAAGAGATGGTACAACACTATGAGAAATCATCATCAGTGGATTACAGCCTCAAAGAAGGGGAAACTTTGGTTTTGCAGCTAAAAAATGTTGGTCTGGTGGGCTAAGAAACCGGCGGTTGAACCGGGATTTTCCCTTGTCAGCTATTTTAACGGTCCCATTGGCCAGAACAGCCTGGCCCAGGTACCAGGTCCAGTTTTTTCTGGCTGGGATTTTCTGATGTTTGGCCTTATTCTTTCTCCAATTCCCTAGAAAGAGTCCGGCGCAAAGATAAAATCTGCATTTTTTGAGCAAGGCCTCAACAAGCTCTCATTTAACGAAAAAGCCAACTCCAAGGAGGCCCCAGTTTCCCTCAAGCTCCCTCCACCTCCGCCATCACCGGTCTCTCCTACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGA-GTTTCCTTCCC-AAGACCAACCAGCTGCTGATACTGG-AGCTG-ATACCACT-CCTTTCAAAGC-AGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGAT-AACGTCGCTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAACAGATGGATACANNATAAAAAAAAAAAA]

[+] EMBL C26436               [ACTTCCCTTCCCCACCTTCCTCCTCTCCCACCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTCTCTCACGCGCCTCCGCGTCGCCGCATTCGGGGACGCCCACCGCCGCCGGATCCGGCCAGCCTTCCCCCCTCCCCTCCTTTCCCCGGCCGCTCCCCTNCTCGGTAAGATCCGGCGCCGGTTCCATGTCGAGCACCGGCGAGCAGTCGCAGGCGAAGGCGGAGGCCGAGGAGGCGGTGGAGCTCGTGCTGTTCCAGGTCGCTGAGTGCTACGTCTANCTGATACCTNCCAGGAAGACAGCCGCCTCCTACAGGGCTGATGAATGGAACGTC ACAAGTGGGCTTTGGGAAGGGACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK103190             [                                        TCTCTCTCTCTCTCTCTCTCTCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTCTCTCACGCGCCTCCGCGTCGCCGCATTCGGGGACGCCCACCGCCGCCGGATCCGGCCAGCCTTCCCCCCTCCCCTCCTTTCCCCGGCCGCTCCCCTCCTCGGTAAGATCCGGCGCCGGTTCCATGTCGAGCACCGGCGAGCAGTCGCAGGCGAAGGCGGAGGCCGAGGAGGCGGTGGAGCTCGTGCTGTTCCAGGTCGCTGAGTGCTACGTCTACCTGATACCTCCCAGGAAGACAGCCGCCTCCTACAGGGCTGATGAATGGAACGTCAACAAGTGGGC TTGGGAAGGGACTCTCAAGGTTGTCAGCAAAGGAGAAGAGTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTAGGGCATTCCTCAGAGAAGACGAACCACATCCGGTGGAACCTGTTATTGATAGCAGCAGATATTTTGTACTCCGTGTTGAAGAGAATATAGATGGACGTCAGCGCCATGCCTTTATTGGTTTAGGCTTCCGTGAAAGACCTCAAGCATATGATTTCCAAGCTGCTCTGCACGACCATATGAAATATCTAAACAAGAAAAAGACTGCTGAAGAGATGGTACAACACTATGAGAAATCATCATCAGTGGATTACAGCCTCAAAGAAGGGGAAACTTTGGTTTTGCAGCTAAAAAATGTTGGTCTGGTGGGCTAAGAAACCGGCGGTTGAACCGGGATTTTCCCTTGTCAGCTATTTTAACGGTCCCATTGGCCAGAACAGCCTGGCCCAGGTACCAGGTCCAGTTTTTTCTGGCTGGGATTTTCTGATGTTTGGCCTTATTCTTTCTCCAATTCCCTAGAAAGAGTCCGGCGCAAAGATAAAATCTGCATTTTTTGAGCAAGGCCTCAACAAGCTCTCATTTAACGAAAAAGCCAACTCCAAGGAGGCCCCAGTTTCCCTCAAGCTCCCTCCACCTCCGCCATCACCGGTCTCTCCTACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGA GTTTCCTTCCC AAGACCAACCAGCTGCTGATACTGG AGCTG ATACCACT CCTTTCAAAGC AGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGAT AACGTCGCTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAAC                           ]
[+] EMBL AU082913             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCTCCACCTCCGCCATCACCGGTCTCTCCTACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGA GTTTCCTTCCC AAGACCAACCAGCTGCTGATACTGG AGCTG ATACCACT CCTTTCAAAGC AGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGAT AACGTCGCTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAACAGATGGATACANNATAAAAAAAA    ]
[+] EMBL AU173119             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGCGGAGGTTTCTTTCCCAAAGACCAACCAGCTGNTAAT CTGGAAGCTGAATCCCACTCCCTTTCAAAGCAAAAATTTCTTTTTTTTCATGAACAACCAGCCGCGGATAAACGTGGTTTNTTCCCCCCCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAATCATGTATNTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAACAGATGGATCCAAAAAAAAAAAAAAAAA]


>consensus_11869#0 ACTTCCCTTCCCCACCTTCCTCCTCTCCCACCGCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTCTCTCACGCGCCTCCGCGTCGC CGCATTCGGGGACGCCCACCGCCGCCGGATCCGGCCAGCCTTCCCCCCTCCCCTCCTTTC CCCGGCCGCTCCCCTNCTCGGTAAGATCCGGCGCCGGTTCCATGTCGAGCACCGGCGAGC AGTCGCAGGCGAAGGCGGAGGCCGAGGAGGCGGTGGAGCTCGTGCTGTTCCAGGTCGCTG AGTGCTACGTCTANCTGATACCTNCCAGGAAGACAGCCGCCTCCTACAGGGCTGATGAAT GGAACGTCACAAGTGGGCTTGGGAAGGGACTTTCAAGGTTGTCAGCAAAGGAGAAGAGTG CATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTAGGGCATTCCTCAGAGA AGACGAACCACATCCGGTGGAACCTGTTATTGATAGCAGCAGATATTTTGTACTCCGTGT TGAAGAGAATATAGATGGACGTCAGCGCCATGCCTTTATTGGTTTAGGCTTCCGTGAAAG ACCTCAAGCATATGATTTCCAAGCTGCTCTGCACGACCATATGAAATATCTAAACAAGAA AAAGACTGCTGAAGAGATGGTACAACACTATGAGAAATCATCATCAGTGGATTACAGCCT CAAAGAAGGGGAAACTTTGGTTTTGCAGCTAAAAAATGTTGGTCTGGTGGGCTAAGAAAC CGGCGGTTGAACCGGGATTTTCCCTTGTCAGCTATTTTAACGGTCCCATTGGCCAGAACA GCCTGGCCCAGGTACCAGGTCCAGTTTTTTCTGGCTGGGATTTTCTGATGTTTGGCCTTA TTCTTTCTCCAATTCCCTAGAAAGAGTCCGGCGCAAAGATAAAATCTGCATTTTTTGAGC AAGGCCTCAACAAGCTCTCATTTAACGAAAAAGCCAACTCCAAGGAGGCCCCAGTTTCCC TCAAGCTCCCTCCACCTCCGCCATCACCGGTCTCTCCTACAGATTCTGGCATCGCGGCTT CTCCGTTCAAAGCGGAGTTTCCTTCCCAAGACCAACCAGCTGCTGATACTGGAGCTGATA CCACTCCTTTCAAAGCAGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGATAACGTCG CTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGA AGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAATCA TGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCATCA GTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATCTTG TTATAATCTATAAAAGAACAGATGGATACANNATAAAAAAAAAAAA



consensusID : consensus_11869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1332
fasta sequence
                              [TCTCCCCTCTTCGGCACTTCCCTTCCCCACCTTCCTCCTCTCCCACCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTCTCTCACGCGCCTCCGCGTCGCCGCATTCGGGGACGCCCACCGCCGCCGGATCCGGCCAGCCTTCCCCCCTCCCCTCCTTTCCCCGGCCGCTCCCCTCCTCGGTAAGATCCGGCGCCGGTTCCATGTCGAGCACCGGCGAGCAGTCGCAGGCGAAGGCGGAGGCCGAGGAGGCGGTGGAGCTCGTGCTGTTCCAGGTCGCTGAGTGCTACGTCTACCTGATACCTCCCAGGAAGACAGCCGCCTCCTACAGGGCTGATGAATGGAACGTCAACAAGTGGGCTTGGGAAGGGACTCTCAAGGTTGTCAGCAAAGGAGAAGAGTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTAGGGCATTCCTCAGAGAAGACGAACCACATCCGGTGGAACCTGTTATTGATAGCAGCAGATATTTTGTACTCCGTGTTGAAGAGAATATAGATGGACGTCAGCGCCATGCCTTTATTGGTTTAGGCTTCCGTGAAAGACCTCAAGCATATGATTTCCAAGCTGCTCTGCACGACCATATGAAATATCTAAACAAGAAAAAGACTGCTGAAGAGATGGTACAACACTATGAG--AAATCATCATCAGTGGATT-ACAGCCTCAAAGAAGGGGAAACTTTGGTTTTGCAGCTAAAAAATAAAGAGTCCGGCGCAAAGATAAAATCTGCATTTTTTGAGCAAGGCCTCAACAAGCTCTCATTTAACGAAAAAGCCAACTCCAAGGAGGCCCCAGTTTCCCTNAAGCTCCCTCCACCTCCGCCATCACCGGTCTCTCCTACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGAGTTTCCTTCCCAAGACCAACCAGCTGCTGATACTGGAGCTGATACCACTCCTTTCAAAGCAGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGATAACGTCGCTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAACAGATGGATAAAAAAAAAAAA]

[+] EMBL AK106098             [TCTCCCCTCTTCGGCACTTCCCTTCCCCACCTTCCTCCTCTCCCACCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTCTCTCACGCGCCTCCGCGTCGCCGCATTCGGGGACGCCCACCGCCGCCGGATCCGGCCAGCCTTCCCCCCTCCCCTCCTTTCCCCGGCCGCTCCCCTCCTCGGTAAGATCCGGCGCCGGTTCCATGTCGAGCACCGGCGAGCAGTCGCAGGCGAAGGCGGAGGCCGAGGAGGCGGTGGAGCTCGTGCTGTTCCAGGTCGCTGAGTGCTACGTCTACCTGATACCTCCCAGGAAGACAGCCGCCTCCTACAGGGCTGATGAATGGAACGTCAACAAGTGGGCTTGGGAAGGGACTCTCAAGGTTGTCAGCAAAGGAGAAGAGTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTAGGGCATTCCTCAGAGAAGACGAACCACATCCGGTGGAACCTGTTATTGATAGCAGCAGATATTTTGTACTCCGTGTTGAAGAGAATATAGATGGACGTCAGCGCCATGCCTTTATTGGTTTAGGCTTCCGTGAAAGACCTCAAGCATATGATTTCCAAGCTGCTCTGCACGACCATATGAAATATCTAAACAAGAAAAAGACTGCTGAAGAGATGGTACAACACTATGAG  AAATCATCATCAGTGGATT ACAGCCTCAAAGAAGGGGAAACTTTGGTTTTGCAGCTAAAAAATAAAGAGTCCGGCGCAAAGATAAAATCTGCATTTTTTGAGCAAGGCCTCAACAAGCTCTCATTTAACGAAAAAGCCAACTCCAAGGAGGCCCCAGTTTCCCTCAAGCTCCCTCCACCTCCGCCATCACCGGTCTCTCCTACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGAGTTTCCTTCCCAAGACCAACCAGCTGCTGATACTGGAGCTGATACCACTCCTTTCAAAGCAGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGATAACGTCGCTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAACAG                  ]
[+] EMBL AU092308             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TAACCAGGAAAAAGACTGNTGAAGAGATGGTACAACATTNTGGGGAAAATCATCATNAGTGGATTAACAGCCTCAAAGAGGGGGAAACTTTGGTTTTGCAGCTAAAAAATAAAGAGTCCGGCGNAAAGATAAAATCTGCATTTTTTGAGCAAGGCNTCAACAAGCTTTCATTTAACGAAAAAGCCAACTCCAAGGAGGCCCNAGTTTCCCTNAAGCTCCCTCCACTTCNGCCATCACCGGTNTCTCCTACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGAGTTTCCTTCCCAAGACCAACCAGCTGCTGATACTGGAGCTGATACCACTCCTTTCAAAGCAGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGATAACGTCGCTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAACAGATGGATAAAAAAAAAAAA]
[+] EMBL OSC30201             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tncgagAGCTCCCTCCACCTCCGCCATCACCGGTCTCTCCTACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGAGTTTCCTTCCCAAGACCAACCAGCTGCTGATACTGGAGCTGATACCACTCCTTTCAAAGCAGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGATAACGTCGNTTCTTCCCCACCACCG                                                                                                                                                                                                                                                                      ]


>consensus_11869#1 TCTCCCCTCTTCGGCACTTCCCTTCCCCACCTTCCTCCTCTCCCACCGCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTCTCTCAC GCGCCTCCGCGTCGCCGCATTCGGGGACGCCCACCGCCGCCGGATCCGGCCAGCCTTCCC CCCTCCCCTCCTTTCCCCGGCCGCTCCCCTCCTCGGTAAGATCCGGCGCCGGTTCCATGT CGAGCACCGGCGAGCAGTCGCAGGCGAAGGCGGAGGCCGAGGAGGCGGTGGAGCTCGTGC TGTTCCAGGTCGCTGAGTGCTACGTCTACCTGATACCTCCCAGGAAGACAGCCGCCTCCT ACAGGGCTGATGAATGGAACGTCAACAAGTGGGCTTGGGAAGGGACTCTCAAGGTTGTCA GCAAAGGAGAAGAGTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTA GGGCATTCCTCAGAGAAGACGAACCACATCCGGTGGAACCTGTTATTGATAGCAGCAGAT ATTTTGTACTCCGTGTTGAAGAGAATATAGATGGACGTCAGCGCCATGCCTTTATTGGTT TAGGCTTCCGTGAAAGACCTCAAGCATATGATTTCCAAGCTGCTCTGCACGACCATATGA AATATCTAAACAAGAAAAAGACTGCTGAAGAGATGGTACAACACTATGAGAAATCATCAT CAGTGGATTACAGCCTCAAAGAAGGGGAAACTTTGGTTTTGCAGCTAAAAAATAAAGAGT CCGGCGCAAAGATAAAATCTGCATTTTTTGAGCAAGGCCTCAACAAGCTCTCATTTAACG AAAAAGCCAACTCCAAGGAGGCCCCAGTTTCCCTNAAGCTCCCTCCACCTCCGCCATCAC CGGTCTCTCCTACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGAGTTTCCTTCCC AAGACCAACCAGCTGCTGATACTGGAGCTGATACCACTCCTTTCAAAGCAGAATTTCCTT CTTCTCATGAACAACCAGCCGCGGATAACGTCGCTTCTTCCCCACCACCGAAAGCAGAAG CTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACG ACTTCGGAGACTTTCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACT CAAATTGCTCCTTTGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTT GCTGTACAGTACAGAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAACAGATGGAT AAAAAAAAAAAA



consensusID : consensus_11869#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence
                              [GGTTTTGCAGTTAAAAAATAAAGAGTCCGGCGCAAAAATAAAATTTGCTTTTTTTGAGAAAGGCCTCAACAAGTTTTTTTTTAAGGAAAAAGCCAACTCCAAGGGGGCCCCAGTTTCCTTAAAGTTCCCTCCCCCTCCGCCATTACGGGTTTTTCTTAAAAATTTTGGCATCGGGGTTTTTCCGTTAAAAGGGGAGTTTCTTTCCCAAGACCAACCAGTTGTTGATATTGGAGTTGATACCCCTCCTTTCAAAGAAGAATTTCTTTTTTTTTATGAACACCCACCCGGGGAAAAGGTTGTTTTTTCCCCCCCCCCGAAAGCAAAAGTTGTTCTTCAGGAGCACCCAATTGCAGCAAAAAAGGCCCCTCAAAAGAGGGTGGACGACGATTTGGGAGATTTTCAGGCAGGGGGGTGAATCATGTTTTTTGTACAACCCCCATGTTACTCAAATTGCTCCTTTGATTTTCCAGGTTCCATCAGTTGTGACTTTTGCCGGCACATAAGTTTTTGTCCAGTACAAAAAGTTAGTAACTTTTTTGTTATAATTTATAAAAGAACAGAGGGAAACCCAAAAACCCTCCTTT]

[-] EMBL BI305960             [GGTTTTGCAGTTAAAAAATAAAGAGTCCGGCGCAAAAATAAAATTTGCTTTTTTTGAGAAAGGCCTCAACAAGTTTTTTTTTAAGGAAAAAGCCAACTCCAAGGGGGCCCCAGTTTCCTTAAAGTTCCCTCCCCCTCCGCCATTACGGGTTTTTCTTAAAAATTTTGGCATCGGGGTTTTTCCGTTAAAAGGGGAGTTTCTTTCCCAAGACCAACCAGTTGTTGATATTGGAGTTGATACCCCTCCTTTCAAAGAAGAATTTCTTTTTTTTTATGAACACCCACCCGGGGAAAAGGTTGTTTTTTCCCCCCCCCCGAAAGCAAAAGTTGTTCTTCAGGAGCACCCAATTGCAGCAAAAAAGGCCCCTCAAAAGAGGGTGGACGACGATTTGGGAGATTTTCAGGCAGGGGGGTGAATCATGTTTTTTGTACAACCCCCATGTTACTCAAATTGCTCCTTTGATTTTCCAGGTTCCATCAGTTGTGACTTTTGCCGGCACATAAGTTTTTGTCCAGTACAAAAAGTTAGTAACTTTTTTGTTATAATTTATAAAAGAACAGAGGGAAACCCAAAAACCCTCCTTT]


>consensus_11869#2 GGTTTTGCAGTTAAAAAATAAAGAGTCCGGCGCAAAAATAAAATTTGCTTTTTTTGAGAA AGGCCTCAACAAGTTTTTTTTTAAGGAAAAAGCCAACTCCAAGGGGGCCCCAGTTTCCTT AAAGTTCCCTCCCCCTCCGCCATTACGGGTTTTTCTTAAAAATTTTGGCATCGGGGTTTT TCCGTTAAAAGGGGAGTTTCTTTCCCAAGACCAACCAGTTGTTGATATTGGAGTTGATAC CCCTCCTTTCAAAGAAGAATTTCTTTTTTTTTATGAACACCCACCCGGGGAAAAGGTTGT TTTTTCCCCCCCCCCGAAAGCAAAAGTTGTTCTTCAGGAGCACCCAATTGCAGCAAAAAA GGCCCCTCAAAAGAGGGTGGACGACGATTTGGGAGATTTTCAGGCAGGGGGGTGAATCAT GTTTTTTGTACAACCCCCATGTTACTCAAATTGCTCCTTTGATTTTCCAGGTTCCATCAG TTGTGACTTTTGCCGGCACATAAGTTTTTGTCCAGTACAAAAAGTTAGTAACTTTTTTGT TATAATTTATAAAAGAACAGAGGGAAACCCAAAAACCCTCCTTT



consensusID : consensus_11869#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence
                              [CCCCCAAGAAAGAAATCCATTTCTTCTTTTCACGCGCCCTTCCGCGNTCGGCCGGANTTCGGGGGAACGGCCCACCGGCCGGCCGGGAATCCGGGCCAGCNTTCCCCCCTTCCCTTCNTTTCCCCGGCCGNTTCCCNTCNTCGGGTAAGAATCCGGGCGGCCGGTTCCATGTCGNAGCACCGGGCGNAGCAGTCGCAGGCAAAGGCGGAGGCCGAGGAGGCGGGGGGAGTTCGTGCTGTTCCAGGTCGTTGAGTGTTACGTNTACCTGATACCTCCCAGGAAGACAGCCGCCTCCTACAGGGCTGATGAATGGAACGTCAACAAGTGGGGCTTTGGGAAGGGACTNTCAAGGTTGTCAGCAAAGGAGAAGAGTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTA]

[+] EMBL AU173118             [CCCCCAAGAAAGAAATCCATTTCTTCTTTTCACGCGCCCTTCCGCGNTCGGCCGGANTTCGGGGGAACGGCCCACCGGCCGGCCGGGAATCCGGGCCAGCNTTCCCCCCTTCCCTTCNTTTCCCCGGCCGNTTCCCNTCNTCGGGTAAGAATCCGGGCGGCCGGTTCCATGTCGNAGCACCGGGCGNAGCAGTCGCAGGCAAAGGCGGAGGCCGAGGAGGCGGGGGGAGTTCGTGCTGTTCCAGGTCGTTGAGTGTTACGTNTACCTGATACCTCCCAGGAAGACAGCCGCCTCCTACAGGGCTGATGAATGGAACGTCAACAAGTGGGGCTTTGGGAAGGGACTNTCAAGGTTGTCAGCAAAGGAGAAGAGTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTA]


>consensus_11869#3 CCCCCAAGAAAGAAATCCATTTCTTCTTTTCACGCGCCCTTCCGCGNTCGGCCGGANTTC GGGGGAACGGCCCACCGGCCGGCCGGGAATCCGGGCCAGCNTTCCCCCCTTCCCTTCNTT TCCCCGGCCGNTTCCCNTCNTCGGGTAAGAATCCGGGCGGCCGGTTCCATGTCGNAGCAC CGGGCGNAGCAGTCGCAGGCAAAGGCGGAGGCCGAGGAGGCGGGGGGAGTTCGTGCTGTT CCAGGTCGTTGAGTGTTACGTNTACCTGATACCTCCCAGGAAGACAGCCGCCTCCTACAG GGCTGATGAATGGAACGTCAACAAGTGGGGCTTTGGGAAGGGACTNTCAAGGTTGTCAGC AAAGGAGAAGAGTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11869#0      ------------------------------------------------------------
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      -----------------------------------------------TCTCCCCTCTTCG 13
consensus_11869#2      GGTTTTGCAGTTAAAAAATAAAGAGTCCGGCGCAAAAATAAAATTTGCTTTTTTTGAGAA 60
                                                                                   

consensus_11869#0      --ACTTCCCTTCCCCACCTTCCTCCTCTCCCACCGCTCTCTCTCTCTCTCTCTCTCTCTC 58
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      GCACTTCCCTTCCCCACCTTCCTCCTCTCCCACCGCTCTCTCTCTCTCTCTCTCTCTCTC 73
consensus_11869#2      AGGCCTCAACAAGTTTTTTTTTAAGGAAAAAGCCAACTCCAAGGGGGCCCCAGTTTCCTT 120
                                                                                   

consensus_11869#0      TCTCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTC--TCTCACGC----GCC-- 110
consensus_11869#3      ----------------CCCCCAAGAAAGAAATCCATTTCTTCTTTTCACGC----GCCCT 40
consensus_11869#1      TCTCTCAGTCTCTCTCCCCCCCAAGAAGAAATCCATTCCTC--TCTCACGC----GCC-- 125
consensus_11869#2      AAAGTTCCCTCCCCCTCCGCCATTACGGGTTTTTCTTAAAAATTTTGGCATCGGGGTTTT 180
                                       ** **      *   *   **      * *  *      *    

consensus_11869#0      TCCGCGTC--GCCGCATTC---GGGGACG-CCCACCGCC--GCCGG--ATCCGG-CCAGC 159
consensus_11869#3      TCCGCGNTCGGCCGGANTTCGGGGGAACGGCCCACCGGCCGGCCGGGAATCCGGGCCAGC 100
consensus_11869#1      TCCGCGTC--GCCGCATTC---GGGGACG-CCCACCGCC--GCCGG--ATCCGG-CCAGC 174
consensus_11869#2      TCCGTTAAAAGGGGAGTTTCTTTCCCAAGACCAACCAGTT-GTTGAT-ATTGGAGTTGAT 238
                       ****      *  *   *        * * ** ***     *  *   **  *       

consensus_11869#0      CTTCCCCCCTCCC--------CT-CCTTTCCCCGGCCGCTCCCCTNCTC--GGTAAGA-- 206
consensus_11869#3      NTTCCCCCCTTCC--------CTTCNTTTCCCCGGCCGNTTCCCNTCNTCGGGTAAGAA- 151
consensus_11869#1      CTTCCCCCCTCCC--------CT-CCTTTCCCCGGCCGCTCCCCTCCTC--GGTAAGA-- 221
consensus_11869#2      ACCCCTCCTTTCAAAGAAGAATTTCTTTTTTTTTATGAACACCCACCCGGGGAAAAGGTT 298
                          ** ** * *          * * ***            ***  *    *  ***   

consensus_11869#0      ------TCCGGC--GCCGGTTCCAT--GTCGA-GCACCGGC--GAGCAGTCGCAGGCGAA 253
consensus_11869#3      ------TCCGGGCGGCCGGTTCCAT--GTCGNAGCACCGGGCGNAGCAGTCGCAGGCAAA 203
consensus_11869#1      ------TCCGGC--GCCGGTTCCAT--GTCGA-GCACCGGC--GAGCAGTCGCAGGCGAA 268
consensus_11869#2      GTTTTTTCCCCCCCCCCGAAAGCAAAAGTTGTTCTTCAGGAGCACCCAATTGCAG-CAAA 357
                             ***      ***    **   ** *     * **      ** * **** * **

consensus_11869#0      GGCGGAGGCCGAGGAGGCGGTGG------AGCTCGTGCTGTTCCAGGTCGCTGAGTG--C 305
consensus_11869#3      GGCGGAGGCCGAGGAGGCGGGGGG-----AGTTCGTGCTGTTCCAGGTCGTTGAGTG--T 256
consensus_11869#1      GGCGGAGGCCGAGGAGGCGGTGG------AGCTCGTGCTGTTCCAGGTCGCTGAGTG--C 320
consensus_11869#2      AAAGGCCCCTCAAAAGAGGGTGGACGACGATTTGGGAGATTTTCAGGCAGGGGGGTGAAT 417
                          **   *  *  **  ** **      *  * *     ** ****  *  * ***   

consensus_11869#0      TACGTCTANCTGATACCTNCCAGGA-AGACAGCCGCCTCCTACAGGGCTGATGAATGGAA 364
consensus_11869#3      TACGTNTACCTGATACCTCCCAGGA-AGACAGCCGCCTCCTACAGGGCTGATGAATGGAA 315
consensus_11869#1      TACGTCTACCTGATACCTCCCAGGA-AGACAGCCGCCTCCTACAGGGCTGATGAATGGAA 379
consensus_11869#2      CATGTTTTTTGTACAACCCCCATGTTACTCAAATTGCTCCT------TTGATTTTCCAGG 471
                        * ** *     * * *  *** *  *  **     *****       ****        

consensus_11869#0      CGTCA-CAAGTGGG--CTT----GGGAAGGGACTTTCAAGGTTGTCAGCAAAGGAGAAGA 417
consensus_11869#3      CGTCAACAAGTGGGGCTTT----GGGAAGGGACTNTCAAGGTTGTCAGCAAAGGAGAAGA 371
consensus_11869#1      CGTCAACAAGTGGG--CTT----GGGAAGGGACTCTCAAGGTTGTCAGCAAAGGAGAAGA 433
consensus_11869#2      TTCCATCAGTTGTGACTTTTGCCGGCACATAAGTTTTTGTCCAGTACAAAAAGTTAGTAA 531
                          ** **  ** *   **    ** *    * * *       **    ****      *

consensus_11869#0      GTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTAGGGCATTCCTCAG 477
consensus_11869#3      GTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTA------------- 418
consensus_11869#1      GTGCATCATCAAACTGGAAGATAAGAACACAGGGGAGCTGTACGCTAGGGCATTCCTCAG 493
consensus_11869#2      CTTTTTTGTTATAATTTATAA-AAGAACAGAGGGAAACCCAAAAACCCTCCTTT------ 584
                        *   *  * * * *  *  * ******* **** * *   *                  

consensus_11869#0      AGAAGACGAACCACATCCGGTGGAACCTGTTATTGATAGCAGCAGATATTTTGTACTCCG 537
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      AGAAGACGAACCACATCCGGTGGAACCTGTTATTGATAGCAGCAGATATTTTGTACTCCG 553
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      TGTTGAAGAGAATATAGATGGACGTCAGCGCCATGCCTTTATTGGTTTAGGCTTCCGTGA 597
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      TGTTGAAGAGAATATAGATGGACGTCAGCGCCATGCCTTTATTGGTTTAGGCTTCCGTGA 613
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      AAGACCTCAAGCATATGATTTCCAAGCTGCTCTGCACGACCATATGAAATATCTAAACAA 657
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      AAGACCTCAAGCATATGATTTCCAAGCTGCTCTGCACGACCATATGAAATATCTAAACAA 673
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      GAAAAAGACTGCTGAAGAGATGGTACAACACTATGAGAAATCATCATCAGTGGATTACAG 717
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      GAAAAAGACTGCTGAAGAGATGGTACAACACTATGAGAAATCATCATCAGTGGATTACAG 733
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      CCTCAAAGAAGGGGAAACTTTGGTTTTGCAGCTAAAAAATGTTGGTCTGGTGGGCTAAGA 777
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      CCTCAAAGAAGGGGAAACTTTGGTTTTGCAGCTAAAAAATAAAGAGTCCGGCGCAAAGAT 793
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      AACCGGCGGTTGAACCGGGATTTTCCCTTGTCAGCTATTTTAACGGTCCCATTGGCCAGA 837
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      AAAATCTGCATTTTTTGAGCAAGGCCTCAACAAGCTCTCATTTAACGAAAAAGCCAACTC 853
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      ACAGCCTGGCCCAGGTACCAGGTCCAGTTTTTTCTGGCTGGGATTTTCTGATGTTTGGCC 897
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      CAAGGAGGCCCCAGTTTCCCTNAAGCTCCCTCCACCTCCGCCATCACCGGTCTCTCCTAC 913
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      TTATTCTTTCTCCAATTCCCTAGAAAGAGTCCGGCGCAAAGATAAAATCTGCATTTTTTG 957
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      AGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGAGTTTCCTTCCCAAGACCAACCAGC 973
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      AGCAAGGCCTCAACAAGCTCTCATTTAACGAAAAAGCCAACTCCAAGGAGGCCCCAGTTT 1017
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      TGCTGATACTGGAGCTGATACCACTCCTTTCAAAGCAGAATTTCCTTCTTCTCATGAACA 1033
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      CCCTCAAGCTCCCTCCACCTCCGCCATCACCGGTCTCTCCTACAGATTCTGGCATCGCGG 1077
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      ACCAGCCGCGGATAACGTCGCTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGA 1093
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      CTTCTCCGTTCAAAGCGGAGTTTCCTTCCCAAGACCAACCAGCTGCTGATACTGGAGCTG 1137
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      GCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTT 1153
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      ATACCACTCCTTTCAAAGCAGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGATAACG 1197
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      TCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTT 1213
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      TCGCTTCTTCCCCACCACCGAAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAG 1257
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      TGATTTTCCATGTTCCATCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACA 1273
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      AGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGACTTTCAGGCAGCTGGGTGAA 1317
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      GAGAGCTAGTAACTATCTTGTTATAATCTATAAAAGAACAGATGGATAAAAAAAAAAAA- 1332
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      TCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCA 1377
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      ------------------------------------------------------------
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      TCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTACAGAGAGCTAGTAACTATC 1437
consensus_11869#3      ------------------------------------------------------------
consensus_11869#1      ------------------------------------------------------------
consensus_11869#2      ------------------------------------------------------------
                                                                                   

consensus_11869#0      TTGTTATAATCTATAAAAGAACAGATGGATACANNATAAAAAAAAAAAA 1486
consensus_11869#3      -------------------------------------------------
consensus_11869#1      -------------------------------------------------
consensus_11869#2      -------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)