cluster # 11892

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Oryza sativa
cluster # 11892 cluster # 11892 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11892#0 length = 2851 sequences # 8

consensus_11892#1 length = 362 sequences # 1

consensusID : consensus_11892#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2851
fasta sequence

                              [GATCCGAAGTTGGGAGTGGAGATGCGAGCGGCAGCAGGAGGCCGCGGCTTCCTCCTCCACCCGCGGCCGCCATGGCGAGCTCCCGCGACTCCTCCTTGTCCTCCTCCTCCAGCCACCGCCACCGCGCTCGCGAGGCGGCTTCACCACCGACGCCTACCTGAAGGTATTTTGTCCACCCTGGAACGAGGTGTTTCTACACTGCATTTGCGTTGTTGGGTTCACTGTGCAACATGTGGTGTTACGTTACATGACATATCACAGGCAGAACCTGTGAATGGAGCAAAGTCCGACCTTGTTCAAAAGCATGAGAAGGTAGGTGCATTTCAGAGAATACCAATGGTGATGCCTGCAACTGATATACTTATGTCAGCACAAAGAAAATCAAGAAATGTACCACCTACAAAGGGTATAGCAAATATTGCTAAACGTGAAAGGAACAAAGGGGCAAAACAACTTGATGCCTTAATGAAAGAAATTTCAGTACCTCTGAGAACATATACAGAAAACTTCCCTAAGAGGAGGGATCTTCACCCCTATGAGAGATCTCTCATTGAGTTGACTTTTGGGGAGGGATATTACGAGAAGGTAATAGCACGAGTGGATGCTCTCAGGAAAAAGATTAATTCTGTCGGGAAGCAACATGCTTCTGTCTGTGCTAAGTCATTAACGAAGCGTGAAGCAGAGGAGCGACTCAGTGAGGGGCGGAAGAAACTTGAGGAAGCTTTCGAGCATGGGAAGTGGGTAATTGATGATTTAGTAAACATTGCAAAGACTTTGCGTTCTATGCCAGTTGTTGATCCACATATACCTACACTTTGTCTTGTTGGATCACCCAATGTGGGGAAGTCATCATTAGTTCGCATATTATCGTCTGGAAAACCTGAGGTCTGCAGCTACCCTTTCACAACAAGAGGTATTCTAATGGGACACATTGTATCCAATCATGAACGTTTTCAGGTTACTGATACCCCAGGACTTCTTACAAGAGATGATGATGAAAGGAATAACATTGAGAAATTGACCCTTGCTGTCCTTTCTCATCTACCAATTGCTGTCCTGTATGTTCATGATTTATCTGAGGACTGCGGGACCTCAGTGGCCGATCAGTACATCACATACAAGCATATAAAGGAAAGATTCGGTGATCGCTTGTGGCTTGATGTTATATCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCATCAGCTACTAACCTCTCAGATGTCTCGGATCAAAGCTGGCACAATCTATCAGGAAACCCAGAGAACGGATGATAATGCTCCCGGGCAAACTTAGATTATGGAAAGGTTATGTACACATTTATGTAAACCTTTTAACTCGTGCTGACAGTCGGTGCATCTAATGTAGTAGTACCTGGAATTTTGTACGGAAGGAGAAAA-TTTTGGGCCTGTTCACTTTGATG-----AAAAAAAAAACCTTACTAAATTTTGGCATTGCCAAATTTTGGTATAGTTGCCAAAATTTTGGCGAACTTGTCAAAATTTTGACATGATTTCTTATATAGTTACCAAAATTTGGTAGCAAACTAAATGTAGCTACTTTTTTAACAACTTTACCAAAATTTGATAAGGTTGAAAATGGCAGCAAAGTGAACAGACCCTTTCACATGCAGCTTTTACATGCAACAAGGCCCTACTAGGGCTGGTTGTGTCTTCGATTAACTTCAGATGAGGAGCAGAAGAAGTGGACTCGCATCAGGCCATCAGCGATGGCGGATTGTTTGAGAAACCCCAACTGCTATATGGAGAAGGAAAAGGTACGAATTACCCCCCTAAATTCGAAAAACAGGCATTCTACATCCTCAATTATTGAAACCGAATAAATAACCCCCCTACTCAATCCGGAGTAGTTTTGGATTCACTGGCAGTTGAGTCAGCATTTTTTTTAAAAAAAATTAGTGGGCCCCACTGTCAGTTCTCCACCACTCTCTCTCTCTCTACTCTATCCCAATCTCCCCCCCCCTCCCCCTCTCTCTCTCTCTCTGCTCACCAGCATGGCGGCGGCCCCGCGAGGGCGGGAGCAAGCAGCGCTGCCGGCGGCGGAGGGCAGCGGGCGGCTGAGACGGAAGCGGAGCGGGCGGCCGGCAGCTTCGCCGCCACCTCCCGCACCATCGCAGCCACCTCGCCCAGCGGCTTCTTCAGGACGGCGTCCGCGGGCTCCTCCCGCTCCACGTAGGTGGTCGCGTTGCCGACGTAGCTGCGCAGCGCGCGGCAGAAATCCGGCGACCTCACGCGCCACCGCAGGTCCACCCAATACCCCATGCTGCAGCGCCTCGCCGCGGTGTCGGATTTGGCTATGCTCGCCGACGAACTGACGACGGCGGCTAGCTTCTTCCACAGGTACGCCGACACCGCCTGCACGCTCGTCGCGCGCGCCTCCTCGCGCAGCCTGGCGATGTCGGCGGCCTCGACATAGTAGAGCCGCTCGACGAAGCTCGCCTCCCCAGTGAGCGGGTTCACCTCGTGCTCGTGGTCCCACGGCACGAACATCCCGTCGACGGCGGCGCTGTACCTCGGCGGGGAGTGGGGACGGCTCAGCACCGACCGGTCAAGGTTCAGGCCTCCGGCGAATGTCCCCGTGCGCGCGAACTCCGACCACGACCGGAGGAGCACCACCACGATGTGGCCGTTGCCGAGGAGGTGGTTGCTAGCCCACACCACGGCTGATGCGGCAGGTGATGCGGAGGAGAGGAGAGGAGAGGAGTGGTAGTAATAGT]

[+] EMBL AK067062             [GATCCGAAGTTGGGAGTGGAGATGCGAGCGGCAGCAGGAGGCCGCGGCTTCCTCCTCCACCCGCGGCCGCCATGGCGAGCTCCCGCGACTCCTCCTTGTCCTCCTCCTCCAGCCACCGCCACCGCGCTCGCGAGGCGGCTTCACCACCGACGCCTACCTGAAGGTATTTTGTCCACCCTGGAACGAGGTGTTTCTACACTGCATTTGCGTTGTTGGGTTCACTGTGCAACATGTGGTGTTACGTTACATGACATATCACAGGCAGAACCTGTGAATGGAGCAAAGTCCGACCTTGTTCAAAAGCATGAGAAGGTAGGTGCATTTCAGAGAATACCAATGGTGATGCCTGCAACTGATATACTTATGTCAGCACAAAGAAAATCAAGAAATGTACCACCTACAAAGGGTATAGCAAATATTGCTAAACGTGAAAGGAACAAAGGGGCAAAACAACTTGATGCCTTAATGAAAGAAATTTCAGTACCTCTGAGAACATATACAGAAAACTTCCCTAAGAGGAGGGATCTTCACCCCTATGAGAGATCTCTCATTGAGTTGACTTTTGGGGAGGGATATTACGAGAAGGTAATAGCACGAGTGGATGCTCTCAGGAAAAAGATTAATTCTGTCGGGAAGCAACATGCTTCTGTCTGTGCTAAGTCATTAACGAAGCGTGAAGCAGGGGAGCGACTCAGTGAGGGGCGGAAGAAACTTGAGGAAGCTTTCGAGCATGGGAAGTGGGTAATTGATGATTTAGTAAACATTGCAAAGACTTTGCGTTCTATGCCAGTTGTTGATCCACATATACCTACACTTTGTCTTGTTGGATCACCCAATGTGGGGAAGTCATCATTAGTTCGCATATTATCGTCTGGAAAACCTGAGGTCTGCAGCTACCCTTTCACAACAAGAGGTATTCTAATGGGACACATTGTATCCAATCATGAACGTTTTCAGGTTACTGATACCCCAGGACTTCTTACAAGAGATGATGATGAAAGGAATAACATTGAGAAATTGACCCTTGCTGTCCTTTCTCATCTACCAATTGCTGTCCTGTATGTTCATGATTTATCTGAGGACTGCGGGACCTCAGTGGCCGATCAGTACATCACATACAAGCATATAAAGGAAAGATTCGGTGATCGCTTGTGGCTTGATGTTATATCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCATCAGCTACTAACCTCTCAGATGTCTCGGATCAAAGCTGGCACAATCTATCAGGAAACCCAGAGAACGGATGATAATGCTCCCGGGCAAACTTAGATTATGGAAAGGTTATGTACACATTTATGTAAACCTTTTAACTCGTGCTGACAGTCGGTGCATCTAATGTAGTAGTACCTGGAATTTTGTACGGAAGGAGAAAA TTTTGGGCCTGTTCACTTTGATG     AAAAAAAAAACCTTACTAAATTTTGGCATTGCCAAATTTTGGTATAGTTGCCAAAATTTTGGCGAACTTGTCAAAATTTTGACATGATTTCTTATATAGTTACCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB670998             [      AAGTTGGGAGTGGAGATGCGAGCGGCAGCAGGAGGCCGCGGCTTCCTCCTCCACCCGCGGCCGCCATGGCGAGCTCCCGCGACTCCTCCTTGTCCTCCTCCTCCAGCCACCGCCACCGCGCTCGCGAGGCGGCTTCACCACCGACGCCTACCTGAAGGTATTTTGTCCACCCTGGAACGAGGTGTTTCTACACTGCATTTGCGTTGTTGGGTTCACTGTGCAACATGTGGTGTTACGTTACATGACATATCACAGGCAGAACCTGTGAATGGAGCAAAGTCCGACCTTGTTCAAAAGCATGAGAAGGTAGGTGCATTTCAGAGAATACCAATGGTGATGCCTGCAACTGATATACTTATGTCAGCACAAAGAAAATCAAGAAATGTACCACCTACAAAGGGTATAGCAAATATTGCTAAACGTGAAAGGAACAAAGGGGCAAAACAACTTGATGCCTTAATGAAAGAAATTTCAGTACCTCTGAGAACATATACAGAAAACTTCCCTAAGAGGAGGGATCTTCACCCCTATGAGAGATCTCTCATTGAGTTGACTTTTGGGGAGGGATATTACGAGAAGGTAATAGCACGAGTGGATGCTCTCAGGAAAAAGATTAATTCTGTCGGGAAGCAACATGCTTCTGTCTGTGCTAAGTCATTAACGAAGCGTGAAGCAGAGGAGCGACTCAGTGAGGGGCGGAAGAAACTTGAGGAAGCTTTCGAGCATGGGAAGTGGGTAATTGATGATTTAGTAAACATTGCAAAGACTTTGCGTTCTATGCCAGTTGTTGATCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB678670             [                 GGAGATGCGAGCGGCAGCAGGAGGCCGCGGCTTCCTCCTCCACCCGCGGCCGCCATGGCGAGCTCCCGCGACTCCTCCTTGTCCTCCTCCTCCAGCCACCGCCACCGCGCTCGCGAGGCGGCTTCACCACCGACGCCTACCTGAAGGTATTTTGTCCACCCTGGAACGAGGTGTTTCTACACTGCATTTGCGTTGTTGGGTTCACTGTGCAACATGTGGTGTTACGTTACATGACATATCACAGGCAGAACCTGTGAATGGAGCAAAGTCCGACCTTGTTCAAAAGCATGAGAAGGTAGGTGCATTTCAGAGAATACCAATGGTGATGCCTGCAACTGATATACTTATGTCAGCACAAAGAAAATCAAGAAATGTACCACCTACAAAGGGTATAGCAAATATTGCTAAACGTGAAAGGAACAAAGGGGCAAAACAACTTGATGCCTTAATGAAAGAAATTTCAGTACCTCTGAGAACATATACAGAAAACTTCCCTAAGAGGAGGGATCTTCACCCCTATGAGAGATCTCTCATTGAGTTGACTTTTGGGGAGGGATATTACGAGAAGGTAATAGCACGAGTGGATGCTCTCAGGAAAAAGATTAATTCTGTCGGGAAGCAACATGCTTCTGTCTGTGCTAAGTCATTAACGAAGCGTGAAGCAGAGGAGCGACTCAGTGAGGGGCGGAAGAAACTTGAGGAAGCTTTCGAGCATGGGAAGTGGGTAATTGATGATTTAGTAAACATTGCAAAGACTTTGCGTTCTATGCCAGTTGTTGATCCACATATACCTACACTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB677164             [                                                                                                                                                                                                               CGTTGTTGGGTTCACTGTGCAACATGTGGTGTTACGTTACATGACATATCACAGGCAGAACCTGTGAATGGAGCAAAGTCCGACCTTGTTCAAAAGCATGAGAAGGTAGGTGCATTTCAGAGAATACCAATGGTGATGCCTGCAACTGATATACTTATGTCAGCACAAAGAAAATCAAGAAATGTACCACCTACAAAGGGTATAGCAAATATTGCTAAACGTGAAAGGAACAAAGGGGCAAAACAACTTGATGCCTTAATGAAAGAAATTTCAGTACCTCTGAGAACATATACAGAAAACTTCCCTAAGAGGAGGGATCTTCACCCCTATGAGAGATCTCTCATTGAGTTGACTTTTGGGGAGGGATATTACGAGAAGGTAATAGCACGAGTGGATGCTCTCAGGAAAAAGATTAATTCTGTCGGGAAGCAACATGCTTCTGTCTGTGCTAAGTCATTAACGAAGCGTGAAGCAGAGGAGCGACTCAGTGAGGGGCGGAAGAAACTTGAGGAAGCTTTCGAGCATGGGAAGTGGGTAATTGATGATTTAGTAAACATTGCAAAGACTTTGCGTTCTATGCCAGTTGTTGATCCACATATACCTACACTTTGTCTTGTTGGATCACCCAATGTGGGGAAGTCATCATTAGTTCGCATATTATCGTCTGGAAAACCTGAGGTCTGCAGCTACCCTTTCACAACAAGAGGTATTCTAATGGGACACATTGTATCCAATCATGAACGTTTTCAGGTTACTGATACCCCAGGACTTCTTACAAGAGATGATGATGAAAGGAAATACATTGAGAAATTGACCCTTGCTGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB670999             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTAGTAAACATTGCAAAGACTTTGCGTTCTATGCCAGTTGTTGATCCACATATACCTACACTTTGTCTTGTTGGATCACCCAATGTGGGGAAGTCATCATTAGTTCGCATATTATCGTCTGGAAAACCTGAGGTCTGCAGCTACCCTTTCACAACAAGAGGTATTCTAATGGGACACATTGTATCCAATCATGAACGTTTTCAGGTTACTGATACCCCAGGACTTCTTACAAGAGATGATGATGAAAGGAATAACATTGAGAAATTGACCCTTGCTGTCCTTTCTCATTTACCAATTGCTGTCCTGTATGTTCATGATTTATTTGAGGACTGCGGGACCTCAGTGGCCGATCAGTACATCACATACAAGCATATAAAGGAAAGATTCGGTGATCGCTTGTGGCTTGATGTTATATCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCATCAGCTACTAACCTCTCAGATGTCTCGGATCAAAGCTGGCACAATCTATCAGGAAACCCAGAGAACGGATGATAATGCTCCCGGGCAAACTTAGATTATGGAAAGGTTATGTACACATTTATGTAAACCTTTTAACTCGTGCTGACAGTCGGTGCATTTAATGTAGTAGTACCTGGAATTTTGTACGGAAAGAGAAAA TTTTGGGCCTGTTCACTTTGATG     AAAAAAAAAAaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB677165             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTAGTAAACATTGCAAAGACTTTGCGTTCTATGCCAGTTGTTGATCCACATATACCTACACTTTGTCTTGTTGGATCACCCAATGTGGGGAAGTCATCATTAGTTCGCATATTATCGTCTGGAAAACCTGAGGTCTGCAGCTACCCTTTCACAACAAGAGGTATTCTAATGGGACACATTGTATCCAATCATGAACGTTTTCAGGTTACTGATACCCCAGGACTTCTTACAAGAGATGATGATGAAAGGAATAACATTGAGAAATTGACCCTTGCTGTCCTTTCTCATCTACCAATTGCTGTCCTGTATGTTCATGATTTATCTGAGGACTGCGGGACCTCAGTGGCCGATCAGTACATCACATACAAGCATATAAAGGAAAGATTCGGTGATCGCTTGTGGCTTGATGTTATATCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCATCAGCTACTAACCTCTCAGATGTCTCGGATCAAAGCTGGCACAATCTATCAGGAAACCCAGAGAACGGATGATAATGCTCCCGGGCAAACTTAGATTATGGAAAGGTTATGTACACATTTATGTAAACCTTTTAACTCGTGCTGACAGTCGGTGCATCTAATGTAGTAGTACCTGGAATTTTGTACGGAAGGAGAAAA TTTTGGGCCTGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA767093             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGAGGTCTGCAGCTACCCTTTCACAACAAGAGGTATTCTAATGGGACACATTGTATCCAATCATGAACGTTTTCAGGTTACTGATACCCCAGGACTTCTTACAAGAGATGATAATGAAAGGAATAACATTGAGAAATTGACCCTTGCTGTCCTTTCTCATCTACCAATTGCTGTCCTGTATGTTCATGATTTATCTGAGGACTGCGGGACCTCAGTGGCCGATCAGTACATCACATACAAGCATATAAAGGAAAGATTCGGTGATCGCTTGTGGCTTGATGTTATATCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCATCAGCTACTAACCTCTCAGATGTCTCGGATCAAAGCTGGCACAATCTATCAGGAAACCCAGAGAACGGATGATAATGCTCCCGGGCAAACTTAGATTATGGAAAGGTTATGTACACATTTATGTAAACCTTTTAACTCGTGCTGACAGTCGGTGCATCTAATGTAGTAGTACCTGGAATTTTGTACGGNANGAGAAAATTTTTGGGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL AK107200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TAGTAGTACCTGGAATTTTGTACGGAAGGAGAAAA TTTTGGGCCTGTTCACTTTGATGAAAAAAAAAAAAAAACCTTACTAAATTTTGGCATTGCCAAATTTTGGTATAGTTGCCAAAATTTTGGCGAACTTGTCAAAATTTTGACATGATTTCTTATATAGTTACCAAAATTTGGTAGCAAACTAAATGTAGCTACTTTTTTAACAACTTTACCAAAATTTGATAAGGTTGAAAATGGCAGCAAAGTGAACAGACCCTTTCACATGCAGCTTTTACATGCAACAAGGCCCTACTAGGGCTGGTTGTGTCTTCGATTAACTTCAGATGAGGAGCAGAAGAAGTGGACTCGCATCAGGCCATCAGCGATGGCGGATTGTTTGAGAAACCCCAACTGCTATATGGAGAAGGAAAAGGTACGAATTACCCCCCTAAATTCGAAAAACAGGCATTCTACATCCTCAATTATTGAAACCGAATAAATAACCCCCCTACTCAATCCGGAGTAGTTTTGGATTCACTGGCAGTTGAGTCAGCATTTTTTTTAAAAAAAATTAGTGGGCCCCACTGTCAGTTCTCCACCACTCTCTCTCTCTCTACTCTATCCCAATCTCCCCCCCCCTCCCCCTCTCTCTCTCTCTCTGCTCACCAGCATGGCGGCGGCCCCGCGAGGGCGGGAGCAAGCAGCGCTGCCGGCGGCGGAGGGCAGCGGGCGGCTGAGACGGAAGCGGAGCGGGCGGCCGGCAGCTTCGCCGCCACCTCCCGCACCATCGCAGCCACCTCGCCCAGCGGCTTCTTCAGGACGGCGTCCGCGGGCTCCTCCCGCTCCACGTAGGTGGTCGCGTTGCCGACGTAGCTGCGCAGCGCGCGGCAGAAATCCGGCGACCTCACGCGCCACCGCAGGTCCACCCAATACCCCATGCTGCAGCGCCTCGCCGCGGTGTCGGATTTGGCTATGCTCGCCGACGAACTGACGACGGCGGCTAGCTTCTTCCACAGGTACGCCGACACCGCCTGCACGCTCGTCGCGCGCGCCTCCTCGCGCAGCCTGGCGATGTCGGCGGCCTCGACATAGTAGAGCCGCTCGACGAAGCTCGCCTCCCCAGTGAGCGGGTTCACCTCGTGCTCGTGGTCCCACGGCACGAACATCCCGTCGACGGCGGCGCTGTACCTCGGCGGGGAGTGGGGACGGCTCAGCACCGACCGGTCAAGGTTCAGGCCTCCGGCGAATGTCCCCGTGCGCGCGAACTCCGACCACGACCGGAGGAGCACCACCACGATGTGGCCGTTGCCGAGGAGGTGGTTGCTAGCCCACACCACGGCTGATGCGGCAGGTGATGCGGAGGAGAGGAGAGGAGAGGAGTGGTAGTAATAGT]




>consensus_11892#0
GATCCGAAGTTGGGAGTGGAGATGCGAGCGGCAGCAGGAGGCCGCGGCTTCCTCCTCCAC
CCGCGGCCGCCATGGCGAGCTCCCGCGACTCCTCCTTGTCCTCCTCCTCCAGCCACCGCC
ACCGCGCTCGCGAGGCGGCTTCACCACCGACGCCTACCTGAAGGTATTTTGTCCACCCTG
GAACGAGGTGTTTCTACACTGCATTTGCGTTGTTGGGTTCACTGTGCAACATGTGGTGTT
ACGTTACATGACATATCACAGGCAGAACCTGTGAATGGAGCAAAGTCCGACCTTGTTCAA
AAGCATGAGAAGGTAGGTGCATTTCAGAGAATACCAATGGTGATGCCTGCAACTGATATA
CTTATGTCAGCACAAAGAAAATCAAGAAATGTACCACCTACAAAGGGTATAGCAAATATT
GCTAAACGTGAAAGGAACAAAGGGGCAAAACAACTTGATGCCTTAATGAAAGAAATTTCA
GTACCTCTGAGAACATATACAGAAAACTTCCCTAAGAGGAGGGATCTTCACCCCTATGAG
AGATCTCTCATTGAGTTGACTTTTGGGGAGGGATATTACGAGAAGGTAATAGCACGAGTG
GATGCTCTCAGGAAAAAGATTAATTCTGTCGGGAAGCAACATGCTTCTGTCTGTGCTAAG
TCATTAACGAAGCGTGAAGCAGAGGAGCGACTCAGTGAGGGGCGGAAGAAACTTGAGGAA
GCTTTCGAGCATGGGAAGTGGGTAATTGATGATTTAGTAAACATTGCAAAGACTTTGCGT
TCTATGCCAGTTGTTGATCCACATATACCTACACTTTGTCTTGTTGGATCACCCAATGTG
GGGAAGTCATCATTAGTTCGCATATTATCGTCTGGAAAACCTGAGGTCTGCAGCTACCCT
TTCACAACAAGAGGTATTCTAATGGGACACATTGTATCCAATCATGAACGTTTTCAGGTT
ACTGATACCCCAGGACTTCTTACAAGAGATGATGATGAAAGGAATAACATTGAGAAATTG
ACCCTTGCTGTCCTTTCTCATCTACCAATTGCTGTCCTGTATGTTCATGATTTATCTGAG
GACTGCGGGACCTCAGTGGCCGATCAGTACATCACATACAAGCATATAAAGGAAAGATTC
GGTGATCGCTTGTGGCTTGATGTTATATCCAAATCTGATCTTTTGGACAAGAAAACATCC
TCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGT
GCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCAT
CAGCTACTAACCTCTCAGATGTCTCGGATCAAAGCTGGCACAATCTATCAGGAAACCCAG
AGAACGGATGATAATGCTCCCGGGCAAACTTAGATTATGGAAAGGTTATGTACACATTTA
TGTAAACCTTTTAACTCGTGCTGACAGTCGGTGCATCTAATGTAGTAGTACCTGGAATTT
TGTACGGAAGGAGAAAATTTTGGGCCTGTTCACTTTGATGAAAAAAAAAACCTTACTAAA
TTTTGGCATTGCCAAATTTTGGTATAGTTGCCAAAATTTTGGCGAACTTGTCAAAATTTT
GACATGATTTCTTATATAGTTACCAAAATTTGGTAGCAAACTAAATGTAGCTACTTTTTT
AACAACTTTACCAAAATTTGATAAGGTTGAAAATGGCAGCAAAGTGAACAGACCCTTTCA
CATGCAGCTTTTACATGCAACAAGGCCCTACTAGGGCTGGTTGTGTCTTCGATTAACTTC
AGATGAGGAGCAGAAGAAGTGGACTCGCATCAGGCCATCAGCGATGGCGGATTGTTTGAG
AAACCCCAACTGCTATATGGAGAAGGAAAAGGTACGAATTACCCCCCTAAATTCGAAAAA
CAGGCATTCTACATCCTCAATTATTGAAACCGAATAAATAACCCCCCTACTCAATCCGGA
GTAGTTTTGGATTCACTGGCAGTTGAGTCAGCATTTTTTTTAAAAAAAATTAGTGGGCCC
CACTGTCAGTTCTCCACCACTCTCTCTCTCTCTACTCTATCCCAATCTCCCCCCCCCTCC
CCCTCTCTCTCTCTCTCTGCTCACCAGCATGGCGGCGGCCCCGCGAGGGCGGGAGCAAGC
AGCGCTGCCGGCGGCGGAGGGCAGCGGGCGGCTGAGACGGAAGCGGAGCGGGCGGCCGGC
AGCTTCGCCGCCACCTCCCGCACCATCGCAGCCACCTCGCCCAGCGGCTTCTTCAGGACG
GCGTCCGCGGGCTCCTCCCGCTCCACGTAGGTGGTCGCGTTGCCGACGTAGCTGCGCAGC
GCGCGGCAGAAATCCGGCGACCTCACGCGCCACCGCAGGTCCACCCAATACCCCATGCTG
CAGCGCCTCGCCGCGGTGTCGGATTTGGCTATGCTCGCCGACGAACTGACGACGGCGGCT
AGCTTCTTCCACAGGTACGCCGACACCGCCTGCACGCTCGTCGCGCGCGCCTCCTCGCGC
AGCCTGGCGATGTCGGCGGCCTCGACATAGTAGAGCCGCTCGACGAAGCTCGCCTCCCCA
GTGAGCGGGTTCACCTCGTGCTCGTGGTCCCACGGCACGAACATCCCGTCGACGGCGGCG
CTGTACCTCGGCGGGGAGTGGGGACGGCTCAGCACCGACCGGTCAAGGTTCAGGCCTCCG
GCGAATGTCCCCGTGCGCGCGAACTCCGACCACGACCGGAGGAGCACCACCACGATGTGG
CCGTTGCCGAGGAGGTGGTTGCTAGCCCACACCACGGCTGATGCGGCAGGTGATGCGGAG
GAGAGGAGAGGAGAGGAGTGGTAGTAATAGT

consensusID : consensus_11892#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [TCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCATCAGCTACTAAMCTCTCAGATGTCTCGGATCAAAGCTGGCAMAATCTATCARGRAACCCMGAGGACCGGATGATAATGCYCCCSGGGSAAACMTTWGAATATGGRAAGGTTAWGTACACAWTTATGTAAACCTTTTAAACGCTGCTGACAGTCYGTGCATMTAAWGTAGTAGTACCYGGGAAWTTGTACASGGAAGAGAAAAAWTTTGGG]

[+] EMBL AA752616             [TCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCATCAGCTACTAAMCTCTCAGATGTCTCGGATCAAAGCTGGCAMAATCTATCARGRAACCCMGAGGACCGGATGATAATGCYCCCSGGGSAAACMTTWGAATATGGRAAGGTTAWGTACACAWTTATGTAAACCTTTTAAACGCTGCTGACAGTCYGTGCATMTAAWGTAGTAGTACCYGGGAAWTTGTACASGGAAGAGAAAAAWTTTGGG]




>consensus_11892#1
TCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAA
GTAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAA
GTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCATCAGCTACTAAMCTCTCAGATGTCTCGG
ATCAAAGCTGGCAMAATCTATCARGRAACCCMGAGGACCGGATGATAATGCYCCCSGGGS
AAACMTTWGAATATGGRAAGGTTAWGTACACAWTTATGTAAACCTTTTAAACGCTGCTGA
CAGTCYGTGCATMTAAWGTAGTAGTACCYGGGAAWTTGTACASGGAAGAGAAAAAWTTTG
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11892#0      GATCCGAAGTTGGGAGTGGAGATGCGAGCGGCAGCAGGAGGCCGCGGCTTCCTCCTCCAC 60
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CCGCGGCCGCCATGGCGAGCTCCCGCGACTCCTCCTTGTCCTCCTCCTCCAGCCACCGCC 120
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      ACCGCGCTCGCGAGGCGGCTTCACCACCGACGCCTACCTGAAGGTATTTTGTCCACCCTG 180
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GAACGAGGTGTTTCTACACTGCATTTGCGTTGTTGGGTTCACTGTGCAACATGTGGTGTT 240
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      ACGTTACATGACATATCACAGGCAGAACCTGTGAATGGAGCAAAGTCCGACCTTGTTCAA 300
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      AAGCATGAGAAGGTAGGTGCATTTCAGAGAATACCAATGGTGATGCCTGCAACTGATATA 360
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CTTATGTCAGCACAAAGAAAATCAAGAAATGTACCACCTACAAAGGGTATAGCAAATATT 420
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GCTAAACGTGAAAGGAACAAAGGGGCAAAACAACTTGATGCCTTAATGAAAGAAATTTCA 480
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GTACCTCTGAGAACATATACAGAAAACTTCCCTAAGAGGAGGGATCTTCACCCCTATGAG 540
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      AGATCTCTCATTGAGTTGACTTTTGGGGAGGGATATTACGAGAAGGTAATAGCACGAGTG 600
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GATGCTCTCAGGAAAAAGATTAATTCTGTCGGGAAGCAACATGCTTCTGTCTGTGCTAAG 660
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      TCATTAACGAAGCGTGAAGCAGAGGAGCGACTCAGTGAGGGGCGGAAGAAACTTGAGGAA 720
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GCTTTCGAGCATGGGAAGTGGGTAATTGATGATTTAGTAAACATTGCAAAGACTTTGCGT 780
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      TCTATGCCAGTTGTTGATCCACATATACCTACACTTTGTCTTGTTGGATCACCCAATGTG 840
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GGGAAGTCATCATTAGTTCGCATATTATCGTCTGGAAAACCTGAGGTCTGCAGCTACCCT 900
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      TTCACAACAAGAGGTATTCTAATGGGACACATTGTATCCAATCATGAACGTTTTCAGGTT 960
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      ACTGATACCCCAGGACTTCTTACAAGAGATGATGATGAAAGGAATAACATTGAGAAATTG 1020
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      ACCCTTGCTGTCCTTTCTCATCTACCAATTGCTGTCCTGTATGTTCATGATTTATCTGAG 1080
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GACTGCGGGACCTCAGTGGCCGATCAGTACATCACATACAAGCATATAAAGGAAAGATTC 1140
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GGTGATCGCTTGTGGCTTGATGTTATATCCAAATCTGATCTTTTGGACAAGAAAACATCC 1200
consensus_11892#1      ---------------------------TCCAAATCTGATCTTTTGGACAAGAAAACATCC 33
                                                  *********************************

consensus_11892#0      TCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGT 1260
consensus_11892#1      TCAGAATTTGATGATGCTGATGATGAAGTAGGGAGATACAGAAGATTCGGGCCAGAATGT 93
                       ************************************************************

consensus_11892#0      GCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCAT 1320
consensus_11892#1      GCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAAGAGAAGGTGCAT 153
                       ************************************************************

consensus_11892#0      CAGCTACTAACCTCTCAGATGTCTCGGATCAAAGCTGGCACAATCTATCAGGAAACCCAG 1380
consensus_11892#1      CAGCTACTAAMCTCTCAGATGTCTCGGATCAAAGCTGGCAMAATCTATCARGRAACCCMG 213
                       ********** ***************************** ********* * ***** *

consensus_11892#0      AGAAC-GGATGATAATGCTCCCGGG-CAAAC-TTAGATTATGGAAAGGTTATGTACACAT 1437
consensus_11892#1      AGGACCGGATGATAATGCYCCCSGGGSAAACMTTWGAATATGGRAAGGTTAWGTACACAW 273
                       ** ** ************ *** **  **** ** ** ***** ******* ******* 

consensus_11892#0      TTATGTAAACCTTTTAACTCGTGCTGACAGTCGGTGCATCTAATGTAGTAGTACCTGGAA 1497
consensus_11892#1      TTATGTAAACCTTTTAAACGCTGCTGACAGTCYGTGCATMTAAWGTAGTAGTACCYGGGA 333
                       *****************    *********** ****** *** *********** ** *

consensus_11892#0      TTTTGTAC--GGAAGGAGAAAATTTTGGGCCTGTTCACTTTGATGAAAAAAAAAACCTTA 1555
consensus_11892#1      AWTTGTACASGGAAGAGAAAAAWTTTGGG------------------------------- 362
                         ******  *****   **** ******                               

consensus_11892#0      CTAAATTTTGGCATTGCCAAATTTTGGTATAGTTGCCAAAATTTTGGCGAACTTGTCAAA 1615
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      ATTTTGACATGATTTCTTATATAGTTACCAAAATTTGGTAGCAAACTAAATGTAGCTACT 1675
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      TTTTTAACAACTTTACCAAAATTTGATAAGGTTGAAAATGGCAGCAAAGTGAACAGACCC 1735
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      TTTCACATGCAGCTTTTACATGCAACAAGGCCCTACTAGGGCTGGTTGTGTCTTCGATTA 1795
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      ACTTCAGATGAGGAGCAGAAGAAGTGGACTCGCATCAGGCCATCAGCGATGGCGGATTGT 1855
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      TTGAGAAACCCCAACTGCTATATGGAGAAGGAAAAGGTACGAATTACCCCCCTAAATTCG 1915
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      AAAAACAGGCATTCTACATCCTCAATTATTGAAACCGAATAAATAACCCCCCTACTCAAT 1975
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CCGGAGTAGTTTTGGATTCACTGGCAGTTGAGTCAGCATTTTTTTTAAAAAAAATTAGTG 2035
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GGCCCCACTGTCAGTTCTCCACCACTCTCTCTCTCTCTACTCTATCCCAATCTCCCCCCC 2095
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CCTCCCCCTCTCTCTCTCTCTCTGCTCACCAGCATGGCGGCGGCCCCGCGAGGGCGGGAG 2155
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CAAGCAGCGCTGCCGGCGGCGGAGGGCAGCGGGCGGCTGAGACGGAAGCGGAGCGGGCGG 2215
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CCGGCAGCTTCGCCGCCACCTCCCGCACCATCGCAGCCACCTCGCCCAGCGGCTTCTTCA 2275
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GGACGGCGTCCGCGGGCTCCTCCCGCTCCACGTAGGTGGTCGCGTTGCCGACGTAGCTGC 2335
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      GCAGCGCGCGGCAGAAATCCGGCGACCTCACGCGCCACCGCAGGTCCACCCAATACCCCA 2395
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      TGCTGCAGCGCCTCGCCGCGGTGTCGGATTTGGCTATGCTCGCCGACGAACTGACGACGG 2455
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CGGCTAGCTTCTTCCACAGGTACGCCGACACCGCCTGCACGCTCGTCGCGCGCGCCTCCT 2515
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CGCGCAGCCTGGCGATGTCGGCGGCCTCGACATAGTAGAGCCGCTCGACGAAGCTCGCCT 2575
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CCCCAGTGAGCGGGTTCACCTCGTGCTCGTGGTCCCACGGCACGAACATCCCGTCGACGG 2635
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CGGCGCTGTACCTCGGCGGGGAGTGGGGACGGCTCAGCACCGACCGGTCAAGGTTCAGGC 2695
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CTCCGGCGAATGTCCCCGTGCGCGCGAACTCCGACCACGACCGGAGGAGCACCACCACGA 2755
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      TGTGGCCGTTGCCGAGGAGGTGGTTGCTAGCCCACACCACGGCTGATGCGGCAGGTGATG 2815
consensus_11892#1      ------------------------------------------------------------
                                                                                   

consensus_11892#0      CGGAGGAGAGGAGAGGAGAGGAGTGGTAGTAATAGT 2851
consensus_11892#1      ------------------------------------