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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1016 fasta sequence
[TTTTTTCACATTTAATACTCCATGTATGTGTCCAATTTTTTTTTTTGATTGGTGAAAAGTTTTTTATTT-GGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCC-T-GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGC-TCCTACTTATATTTCACGTACAATTGTTCC-TGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT-TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAA-TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAA-AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT-GGATTC-TCTCCAAAGAAAAGGAA-TGTGATGTTGCGC-AATTC-TTCCCAACTGT-ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC-ATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTT-GATGTCCAGTAAAAGAAAGCTACCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGATTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCAACCTTTGCACGGAAGACAACCTGACCCGCTGGCACAAGGTTGTCACCGGTCAACTTTACAGCCTCAACATACTCATAGAACTGTAGGTCCCTGTGCTCTTCAGATGAATCATCCTCTCGCCATT]
[+] EMBL CF312665 [TTTTTTCACATTTAATACTCCATGTATGTGTCCAAACATTTGATGTGATTGGTGAAAAGTTTTTTTTTT GGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTAT CCCCCC T GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGT TCCTACTTATATTTCACGTACAATTGTTCC TGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAA TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAA AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT GGATTC TCTCCAAAGAAAAGGAA TGTGATGTTGCGC AATTC TTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC ATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTT ]
[+] EMBL CA761610 [ ttttttTTTCTTTTTTTGATTGGAGAAAAATTTTTTATTT GGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCC T GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGC TCCTACTTATATTTCACGTACAATTGTTCC TGTGTGATATGGCTCGAAAAAGCATCAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAA TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAC AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGACCTCATTCCACT GGATTC TCTCCAAAGACAAGGAA TGTGATGTTGCGC AATTC TTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC ATGCCAAATTGGGGAATGGC CTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCACCCGGCTAAGGAATTCCAAAAGATGAAAGTTTGGATGTCCAGTCGAAAAAAGGTACCA AGG ]
[-] EMBL BI807695 [ TTTTTTTTTTGGATGGGTGAAAAGTTTTTTATTTGGGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCCGTGGCTACGGGTGGGATTTACAAAACACGAAGTGCCCGTTATTACCATCGGTTGAATTATTTGATCACACGGGCCAAAACGGCGTCCTACTTATATTTCACGTACAATGGTTCCGTGTGTGATATGG TCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTGGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTGTGGACCTGG CTCCAA TCCAAACCGGGTTGGTGAGCTGAATGGAAATTGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAACAAGTGG ATCTTCCAGTGAGATTGGAGATGCCGGCGCTCAAGTCCTCATTCCACTGGGATTCTTCTCCAAAGAAAAGGAACTGTGATGTTTGGCAAATTC TTCCCAAGTGTGATTTTTTAACGAAGA ]
[+] EMBL CB633487 [ tcTTTTTT TTGGTGAAAAGTTTTTTATTT GGAAACTAAACAACGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCC T GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGC TCCTACTTATATTTCACGTACAATTGTTCC TGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAA TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAA AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT GGATTC TCTCCAAAGAAAAGGAA TGTGATGTTGCGC AATTC TTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC ATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTT GATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGATTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGA ]
[-] EMBL CA764724 [ AAAAATTTTTTATTT GGAAACTAACCAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCC T GCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGC TCCTACTTATATTTCACGTACAATTGTTCC TGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCT TGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAA TGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAA AAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT GGATTC TCTCCAAAGAAAAGGAA TGTGATGTTGCGC AATTC TTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGAC ATGCAAGATTGTGGAATGGC CTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTT GATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGATTTTGGAAACCTGGATCTGCAAT ]
[-] EMBL CF312664 [ CCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACT GGATTC TCTCCAAAGAAAAGGAA TGTGATGTTGCGC AATTCTTTCCCAACTGT ATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGACAATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTT GATGTCCAGTAAAAGAAAGCTACCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCAACCTTTGCACGGAAGACAACCTGACCCGCTGGCACAAGGTTGTCACCGGTCAACTTTACAGCCTCAACATACTCATAGAACTGTAGGTCCCTGTGCTCTTCAGATGAATCATCCTCTCGCCATT]
consensusID : consensus_11909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 833 fasta sequence
[TTTTTTTTCTTTTTNTTTTTTTTTTTTTTTTTTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCACGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAAAAAAGGAATGTGATGTTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCA]
[-] EMBL AU057051 [TTTTTTTTCTTTTTNTTTTTTTTTTTTTTTTTTTCAACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCACGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGGAGATGCCG ]
[+] EMBL CB655796 [ tccTTTTTTTTTTTTTC ACAAAATTCATGCTGAGTTATATATATACACACAGCAGTTATCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCACGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAAATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAAAAAAGGAATGTGATGTTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCA]
[+] EMBL CB650785 [ TTTTTCAACAAAATTCATGCTGAGTTATATATCCTTACACAGCAGTTATCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGTTATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCACGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAATTCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGACCTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACTCTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGGAGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAAAAAAGGAATGTGATGTTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGTACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGGAAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGCTATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCAACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCACTCCAAGTTCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11909#0 TTTTTTCACATTTAATACTCCATGTATGTGTCCAATTTTTTTTTTTGATTGGTGAAAAGT 60
consensus_11909#1 -------------------------------------TTTTTTTTCTTTTTNTTTTTTTT 23
******** ** * *
consensus_11909#0 TTTTTATTTGGAAACTAAACAAGGCCAAAGTTCAACAAAATTCATGCTGAGTTATATATA 120
consensus_11909#1 TTTTTTTTT---------------------TTCAACAAAATTCATGCTGAGTTATATATA 62
***** *** ******************************
consensus_11909#0 TACACACAGCAGTTATCCCCCCCTGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGT 180
consensus_11909#1 TACACACAGCAGTTATCCCCCC-TGCTACTGGTTGGATTTACAAAACACGAAGTGCCCGT 121
********************** *************************************
consensus_11909#0 TATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGCTCCTACTTATATTTCA 240
consensus_11909#1 TATTACCACCGGTTGAATTATTTGATCACACTGGCCAAAACTGTTCCTACTTATATTTCA 181
******************************************* ****************
consensus_11909#0 CGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAAT 300
consensus_11909#1 CGTACAATTGTTCCTGTGTGATATGGCTCGAAAAAGCAACAGTTGAAACCCTGGAATAAT 241
************************************************************
consensus_11909#0 TCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGAC 360
consensus_11909#1 TCTAGCTTTTCATTTTGGAGCTTTCAACCTACTTTTCTTTCTTACTAAACTATCTTGGAC 301
************************************************************
consensus_11909#0 CTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAATGGAAATGGAACAACGAGTTCACT 420
consensus_11909#1 CTGGCCTCCAACTCCAAACCGGGTTGGTGAGCTGAAAGGAAATGGAACAACGAGTTCACT 361
************************************ ***********************
consensus_11909#0 CTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGG 480
consensus_11909#1 CTTCATATCTTCCTTTGTGCGAGTTCTTTCCTTAAAAGTGGCATCTTCCAGTGAGATTGG 421
************************************************************
consensus_11909#0 AGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAGAAAAGGAATGTGATG 540
consensus_11909#1 AGATGCCGCCGCTCAAGTCCTCATTCCACTGGATTCTCTCCAAAAAAAAGGAATGTGATG 481
******************************************** ***************
consensus_11909#0 TTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGT 600
consensus_11909#1 TTGCGCAATTCTTCCCAACTGTATTTTTTAACGAAGACGATTATGTACATTCTGTTATGT 541
************************************************************
consensus_11909#0 ACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGG 660
consensus_11909#1 ACATCGACATGCAAGATTGTGGAATGGCCTGCTTCAACTGATTCTCTGAAACTAATCAGG 601
************************************************************
consensus_11909#0 AAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGC 720
consensus_11909#1 AAGCTTCAACCGCCTAAAGAATTCAAAAAGATGAAAGTTTGATGTCCAGTAAAAGAAAGC 661
************************************************************
consensus_11909#0 TACCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCA 780
consensus_11909#1 TATCACAGGACCATCTCTGATGAACTTTCCATCTAGTATCAAAAGCTCGCCATCAACCCA 721
** *********************************************************
consensus_11909#0 ACGAGGATTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCAC 840
consensus_11909#1 ACGAGGGTTTTGGAAACCTGGATCTGCAATTCTCCTTTCCCCTTTGTACCTAGCAACCAC 781
****** *****************************************************
consensus_11909#0 TCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCAACCTTTGC 900
consensus_11909#1 TCCAAGTTCTCTAGGGATGATTCCCTTATGTGGAAGCTGATAATGTTTGCCA-------- 833
****************************************************
consensus_11909#0 ACGGAAGACAACCTGACCCGCTGGCACAAGGTTGTCACCGGTCAACTTTACAGCCTCAAC 960
consensus_11909#1 ------------------------------------------------------------
consensus_11909#0 ATACTCATAGAACTGTAGGTCCCTGTGCTCTTCAGATGAATCATCCTCTCGCCATT 1016
consensus_11909#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||