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Oryza sativa
cluster # 11920 cluster # 11920       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11920#0 length = 1292 sequences # 2  
consensus_11920#1 length = 1121 sequences # 2  
consensus_11920#2 length = 981 sequences # 3  
consensus_11920#3 length = 394 sequences # 1  
consensus_11920#4 length = 268 sequences # 1  

consensusID : consensus_11920#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1292
fasta sequence
                              [CTTGGTCACTTGGTCTCCATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTTCCCATTGATCCCTTCAACACCGCTCTATTTTACCATCCAATTAGCAATTAGCGCTAGTTGAGTATCATCTCCACTATTTATTCTAATCCAGTGTAATCATCCTCCTTCTTCTCCCAAAAACAATACCAAAGAAATCCAAGCACCGCCGCCTCTCTCTGCTCTACCCCCATCTCGCCACCAAGCTCCCCCCTCCATTTTGATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTCGATCCAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGAGAAGAAGAAGAAGAAGAAAGAAAAGATTGCAGTCTTTTGTGTTGTTGAGGTAGAAGGAGAAGAGGAGGAGGTGGGGGAAAGATGTCGCGAGGAGGAGGGAGCTACGGGGAGGTGGGGCAGAAGATCGACTACGTGTTCAAGGTGGTGCTGATCGGCGACTCCGCGGTGGGGAAGTCGCAGCTGCTGGCGGGGTTCGCCCGCAACGAGTTCAACCTCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACGCGAACCCTCCACATCGACGCCCGCACCGTCAAGGCCCAGACTCGGGACACCGCCGGCCAGGAAAGGTACCGAGCAGTAACAAGTGCATACTACCGTGGTGCAGTGGGAGCTATGTTAGTATATGACATAACAAAGCGTCAGTCATTT-GATCATGTAGCTAGGTGGCTCGAGGAGTTAAGAGGCCATGCTGACAAGAACATTGTTATTATGCTTATCGGTAACAAATCTGATCTAGGCACGCTTCGGGTTGTACCGACTGAGGATGCAAAGGAATTTGCTGAGCGTGAGAATCTCTTCTTCATGGAGACCTCTGCTCTTGAGTCTACCAATCTTGAAAATGCTTTCATGACCGTACTTACGGAGATTTACCGTATTGT-CAGCAAGAAAAACCTTGTTGCAAATGAGGAGGTTGATTCTAGCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTCCCAGGTCAGGAGCCAGCCCCTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCGGAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAAGGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCACTCTTTTTTGTATCTGATTGTGTGATGGTGTGTGTAGTCAAAAAA]

[+] EMBL OSRGP1               [CTTGGTCACTTGGTCTCCATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTTCCCATTGATCCCTTCAACACCGCTCTATTTTACCATCCAATTAGCAATTAGCGCTAGTTGAGTATCATCTCCACTATTTATTCTAATCCAGTGTAATCATCCTCCTTCTTCTCCCAAAAACAATACCAAAGAAATCCAAGCACCGCCGCCTCTCTCTGCTCTACCCCCATCTCGCCACCAAGCTCCCCCCTCCATTTTGATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTCGATCCAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGAGAAGAAGAAGAAGAAGAAAGAAAAGATTGCAGTCTTTTGTGTTGTTGAGGTAGAAGGAGAAGAGGAGGAGGTGGGGGAAAGATGTCGCGAGGAGGAGGGAGCTACGGGGAGGTGGGGCAGAAGATCGACTACGTGTTCAAGGTGGTGCTGATCGGCGACTCCGCGGTGGGGAAGTCGCAGCTGCTGGCGGGGTTCGCCCGCAACGAGTTCAACCTCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACGCGAACCCTCCACATCGACGCCCGCACCGTCAAGGCCCAGACTCGGGACACCGCCGGCCAGGAAAGGTACCGAGCAGTAACAAGTGCATACTACCGTGGTGCAGTGGGAGCTATGTTAGTATATGACATAACAAAGCGTCAGTCATTT GATCATGTAGCTAGGTGGCTCGAGGAGTTAAGAGGCCATGCTGACAAGAACATTGTTATTATGCTTATCGGTAACAAATCTGATCTAGGCACGCTTCGGGTTGTACCGACTGAGGATGCAAAGGAATTTGCTGAGCGTGAGAATCTCTTCTTCATGGAGACCTCTGCTCTTGAGTCTACCAATCTTGAAAATGCTTTCATGACCGTACTTACGGAGATTTACCGTATTGT CAGCAAGAAAAACCTTGTTGCAAATGAGGAGGTTGATTCTAGCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTCCCAGGTCAGGAGCCAGCCCCTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCGGAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAAGGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCACTCTTTTTTGTATCTGATTGTGTGATGGTGTGTGTAG        ]
[+] EMBL C98582               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tTCAGTCATTTGGATC TGTAGCTAGGTGGCTCGAGGAGTTAAGAGGCC TGCTGACAAGAACATTGTTATTATGCTTATCGGTAACAAATCTGATCTAGGCACGCTTCGGGTTGTACCGACTGAGGATGCAAAGGAATTTGCTGAGCGTGAGAATCTCTTCTTCATGGAGACCTCTGCTCTTGAGTCTACCAATGTTGAAAATGCTTTCATGACCGTACTTACGGAGATTTACCGTATTGTCCAGCAAGAAAAACCTTGTTGCAAATGAGGAGGTTGATTCTAGCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTCCCAGGTCAGGAGCCAGCCCCTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCGGAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAAGGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCACTCTTTTTTGTATCTGATTGTGTGATGGTGTGTGTAGTCAAAAAA]


>consensus_11920#0 CTTGGTCACTTGGTCTCCATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTT CCCATTGATCCCTTCAACACCGCTCTATTTTACCATCCAATTAGCAATTAGCGCTAGTTG AGTATCATCTCCACTATTTATTCTAATCCAGTGTAATCATCCTCCTTCTTCTCCCAAAAA CAATACCAAAGAAATCCAAGCACCGCCGCCTCTCTCTGCTCTACCCCCATCTCGCCACCA AGCTCCCCCCTCCATTTTGATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTCGA TCCAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGAGAAGAAGAAG AAGAAGAAAGAAAAGATTGCAGTCTTTTGTGTTGTTGAGGTAGAAGGAGAAGAGGAGGAG GTGGGGGAAAGATGTCGCGAGGAGGAGGGAGCTACGGGGAGGTGGGGCAGAAGATCGACT ACGTGTTCAAGGTGGTGCTGATCGGCGACTCCGCGGTGGGGAAGTCGCAGCTGCTGGCGG GGTTCGCCCGCAACGAGTTCAACCTCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGA CGCGAACCCTCCACATCGACGCCCGCACCGTCAAGGCCCAGACTCGGGACACCGCCGGCC AGGAAAGGTACCGAGCAGTAACAAGTGCATACTACCGTGGTGCAGTGGGAGCTATGTTAG TATATGACATAACAAAGCGTCAGTCATTTGATCATGTAGCTAGGTGGCTCGAGGAGTTAA GAGGCCATGCTGACAAGAACATTGTTATTATGCTTATCGGTAACAAATCTGATCTAGGCA CGCTTCGGGTTGTACCGACTGAGGATGCAAAGGAATTTGCTGAGCGTGAGAATCTCTTCT TCATGGAGACCTCTGCTCTTGAGTCTACCAATCTTGAAAATGCTTTCATGACCGTACTTA CGGAGATTTACCGTATTGTCAGCAAGAAAAACCTTGTTGCAAATGAGGAGGTTGATTCTA GCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTCCCAGGTCAGGAGCCAGCCC CTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCGGA GTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAAGG TCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCACTCTTTTTTGTAT CTGATTGTGTGATGGTGTGTGTAGTCAAAAAA



consensusID : consensus_11920#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1121
fasta sequence
                              [GGTCACTTGGTCTCCATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTTCCCATTGATCCCTTCAACACCGCTCTATTTTACCATCCAATTAGCAATTAGCGCTAGTTGAGTATCATCTCCACTATTTATTCTAATCCAGTGTAATCATCCTCCTTTCTTCTCCCAAAAACAATACCAAAGAAATCCAAGCACCGCCGCCTCTCTCTGCTCTACCCCCATCTCACCACCAAGCTCCCCCCTCCATTTTGATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTCGATCCAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGA-GAAGAAGAAGAAGAAGAAAGAAAAG-ATTGC-AGTCTTTTGT-GTTGTTGAGGTA-GAAGGAGAAGAGGAGGAGGTGGGGGAAAGATGTCGCGAGGAGGAGGGAGCTACGGGGAGGTGGGGCAGAAGATCGACTACGTGTTCAAGGTGGTGCTGATCGGCGACTCCGCGGTGGGGAAGTCGCAGCTGCTGGCGCGGTTCGCCCGCAACGAGTTAAGAGGCCATGCTGACAAGAACATTGTTATTATGCTTATCGGTAACAAATCTGATCTAGGCACGCTTCGGGTTGTACCGACTGAGGATGCAAAGGAATTTGCTGAGCGTGAGAATCTCTTCTTCATGGAGACCTCTGCTCTTGAGTCTACCAATGTTGAAAATGCTTTCATGACCGTACTTACGGAGATTTACCGTATTGTCAGCAAGAAAAACCTTGTTGCAAATGAGGAGGTTGATTCTAGCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTCCCAGGTCAGGAGCCAGCCCCTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCGGAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAAGGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCACTCTTTTTTGTATCTGATTGTGTGATGGTGTGTGTAGTCATTTAGAGCATTCTCAGATATAATTGGCCCAATCTTATCTGTTTGCTATATCATTC]

[+] EMBL AK068988             [GGTCACTTGGTCTCCATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTTCCCATTGATCCCTTCAACACCGCTCTATTTTACCATCCAATTAGCAATTAGCGCTAGTTGAGTATCATCTCCACTATTTATTCTAATCCAGTGTAATCATCCTCCTTTCTTCTCCCAAAAACAATACCAAAGAAATCCAAGCACCGCCGCCTCTCTCTGCTCTACCCCCATCTCACCACCAAGCTCCCCCCTCCATTTTGATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTCGATCCAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGA GAAGAAGAAGAAGAAGAAAGAAAAG ATTGC AGTCTTTTGT GTTGTTGAGGTA GAAGGAGAAGAGGAGGAGGTGGGGGAAAGATGTCGCGAGGAGGAGGGAGCTACGGGGAGGTGGGGCAGAAGATCGACTACGTGTTCAAGGTGGTGCTGATCGGCGACTCCGCGGTGGGGAAGTCGCAGCTGCTGGCGCGGTTCGCCCGCAACGAGTTAAGAGGCCATGCTGACAAGAACATTGTTATTATGCTTATCGGTAACAAATCTGATCTAGGCACGCTTCGGGTTGTACCGACTGAGGATGCAAAGGAATTTGCTGAGCGTGAGAATCTCTTCTTCATGGAGACCTCTGCTCTTGAGTCTACCAATGTTGAAAATGCTTTCATGACCGTACTTACGGAGATTTACCGTATTGTCAGCAAGAAAAACCTTGTTGCAAATGAGGAGGTTGATTCTAGCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTCCCAGGTCAGGAGCCAGCCCCTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCGGAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAAGGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCACTCTTTTTTGTATCTGATTGTGTGATGGTGTGTGTAGTCATTTAGAGCATTCTCAGATATAATTGGCCCAATCTTATCTGTTTGCTATATCATTC]
[+] EMBL C71835               [              CATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTTCCCATTGATCCCTTCAACACCGCTCTATTTNACCATCCAATTAGCAATTAGCGCTAGTTGAGTATCATCTCCACTATTTATNCTAATCCAGTGTAATCATCCTCCTTTCTTCTCCCAAAAACAATACCAAAGAAATCCAAGCACCGCCGNCTCTNTCTGCTCTACCCCCATCTNACCACCAAGCTCCCCCCTCCATTTTAATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTNGANCCAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGAGGAAGAAGAAGAAGAAGAAAGAAAAGNATTGCAAGTCTNTTGTGGTTGTTGAGGTAGGAAGGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]


>consensus_11920#1 GGTCACTTGGTCTCCATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTTCCC ATTGATCCCTTCAACACCGCTCTATTTTACCATCCAATTAGCAATTAGCGCTAGTTGAGT ATCATCTCCACTATTTATTCTAATCCAGTGTAATCATCCTCCTTTCTTCTCCCAAAAACA ATACCAAAGAAATCCAAGCACCGCCGCCTCTCTCTGCTCTACCCCCATCTCACCACCAAG CTCCCCCCTCCATTTTGATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTCGATC CAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGAGAAGAAGAAGAA GAAGAAAGAAAAGATTGCAGTCTTTTGTGTTGTTGAGGTAGAAGGAGAAGAGGAGGAGGT GGGGGAAAGATGTCGCGAGGAGGAGGGAGCTACGGGGAGGTGGGGCAGAAGATCGACTAC GTGTTCAAGGTGGTGCTGATCGGCGACTCCGCGGTGGGGAAGTCGCAGCTGCTGGCGCGG TTCGCCCGCAACGAGTTAAGAGGCCATGCTGACAAGAACATTGTTATTATGCTTATCGGT AACAAATCTGATCTAGGCACGCTTCGGGTTGTACCGACTGAGGATGCAAAGGAATTTGCT GAGCGTGAGAATCTCTTCTTCATGGAGACCTCTGCTCTTGAGTCTACCAATGTTGAAAAT GCTTTCATGACCGTACTTACGGAGATTTACCGTATTGTCAGCAAGAAAAACCTTGTTGCA AATGAGGAGGTTGATTCTAGCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTC CCAGGTCAGGAGCCAGCCCCTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCAT TGTACTGTGTTGTTTCGGAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCT GTGAGTAAAGATGAAAAGGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTAT GAATCACTCTTTTTTGTATCTGATTGTGTGATGGTGTGTGTAGTCATTTAGAGCATTCTC AGATATAATTGGCCCAATCTTATCTGTTTGCTATATCATTC



consensusID : consensus_11920#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 981
fasta sequence
                              [CCTCTGCTTCTCCCACCACCTCACTACCTCTCGCCGCGAGAGCAGCAGCGCTCGTGTTCGGTCAAAAGCCTCGCCGCGGCGAGCTCGAGCTCATTCGCATTCCGGAGGGGAGGGAGGGATGGGGGACGAGTCGGAGGGGGAGACGGAGGAGTACCTGTTCAAGGTGGTGATCATCGGGGACAGCGCGGTGGGGAAGAGCAACCTGCTGTCCCGCTACGCCCGCAACGAGTTCAATCTCCACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACGCAGAGCATGGACATCAACGGCAAGGACGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGCGCTTCCGCGCCGTCACCTCCGCCTACTACCGCGGCGCCTTCGGCGCCCTCCTCGTCTACGACATCTCCCGCCGCTCCACCTTCGACAACGTCGGTCGCTGGCTCCAAGAACTCAACACACATTCGGACACGACTGTAGCCAAGATGTTGGTGGGCAACAAGTGTGATCTGGATAATATCCGTGAAGTGCCGGTAGAGGAAGGCAAAGCACTTGCTGAAGCTGAAGGGCTGTTCTTCATGGAGACCTCTGCTCTGGACTC-GACAAACGTGAGGACAGCTTTCGAGATCGTAATCAAGGAGATCTACAGCAACGTGAGCAGGAAGATCTTGAATTCGGACTCCTACAAGGCGGAGCTATCCCTCAATAGGGTAAGCATTGAGGGTGATTCGAAGGATGATCAGAAACAGTCAAACCGGTTTGGATGTTGCTAGGGGTTTTAGTACATTATTATTATTGGATTCACTGTGATATGAAGGTTTTTTGTTCATTAATATTATTATTATTATCTGTAAACTTGTAATCCAAATTGTTTTTTGGTTTGGTTACTCTGGTACACACTGTGACACTGAGATACAAAGTGAGAGAAGAATAGTTGCTGGTAATGAATAGTTGAGAGGACTGCTTTGTGCTGTTACCTGAAAAA]

[+] EMBL AK103220             [CCTCTGCTTCTCCCACCACCTCACTACCTCTCGCCGCGAGAGCAGCAGCGCTCGTGTTCGGTCAAAAGCCTCGCCGCGGCGAGCTCGAGCTCATTCGCATTCCGGAGGGGAGGGAGGGATGGGGGACGAGTCGGAGGGGGAGACGGAGGAGTACCTGTTCAAGGTGGTGATCATCGGGGACAGCGCGGTGGGGAAGAGCAACCTGCTGTCCCGCTACGCCCGCAACGAGTTCAATCTCCACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACGCAGAGCATGGACATCAACGGCAAGGACGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGCGCTTCCGCGCCGTCACCTCCGCCTACTACCGCGGCGCCTTCGGCGCCCTCCTCGTCTACGACATCTCCCGCCGCTCCACCTTCGACAACGTCGGTCGCTGGCTCCAAGAACTCAACACACATTCGGACACGACTGTAGCCAAGATGTTGGTGGGCAACAAGTGTGATCTGGATAATATCCGTGAAGTGCCGGTAGAGGAAGGCAAAGCACTTGCTGAAGCTGAAGGGCTGTTCTTCATGGAGACCTCTGCTCTGGACTC GACAAACGTGAGGACAGCTTTCGAGATCGTAATCAAGGAGATCTACAGCAACGTGAGCAGGAAGATCTTGAATTCGGACTCCTACAAGGCGGAGCTATCCCTCAATAGGGTAAGCATTGAGGGTGATTCGAAGGATGATCAGAAACAGTCAAACCGGTTTGGATGTTGCTAGGGGTTTTAGTACATTATTATTATTGGATTCACTGTGATATGAAGGTTTTTTGTTCATTAATATTATTATTATTATCTGTAAACTTGTAATCCAAATTGTTTTTTGGTTTGGTTACTCTGGTACACACTGTGACACTGAGATACAAAGTGAGAGAAGAATAGTTGCTGGTAATGAATAGTTGAGAGGACTGCTTTGT                ]
[+] EMBL BI797892             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTCTGCTCTGGACTCTGACAAACGTGAGGACAGCTTTCGAGATCGTAATCAAGGAGATCTACAGCAATGTGAGCAGGAAGATCTTGAATTCGGACTCCTACAAGGCGGAGCTATCCCTCAATAGGGTAAGCATTGAGGGTGATTCGAAGGATGATCAGAAACAGTCAAACCGGTTTGGATGTTGCTAGGGGTTTTAGTACATTATTATTATTGGATTCACTGTGATATGAAGGTTTTTTGTTCATTAATATTATTATTATTATCTGTAAACTTGTAATCCAAATTGTTTTTTGGTTTGGTTACTCTGGTACACACTGTGACACTGAGATACAAAGTGAGAGAAGAATAGTTGCTGGTAATGAATAGTTGAGAGGACTGCTTTGTGCTGTTACCTGAAAAA]
[+] EMBL AU058248             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGGACAGCTTTCGAGATCGTAATCAAGGAGATCTACAGCAACGTGAGCAGGAAGATCTTGAATTCGGACTCCTACAAGGCGGA NTATCCCTCAATAGGGTAAGCATTGAGGGTGATTCGAAGGATGATCAGAAACAGTCAAACCGGTTTGGATGTTGCTAGGGGTTTTAGTACATTATTATTATTGGATTCACTGTGATATGAAGGTTTTTTGTTCATTAATATTATTATTATTATCTGTAAACTTGTAATCCAAATTGTTTTTTGGTTTGGTTACTCTGGTACACACTGTGACACTGAGATACAAAGTGAGAGAAGAATAGTTGCTGGTAATGAATAGTTGAGAGGACTGCTTTGTGCTGTTACCTGAA   ]


>consensus_11920#2 CCTCTGCTTCTCCCACCACCTCACTACCTCTCGCCGCGAGAGCAGCAGCGCTCGTGTTCG GTCAAAAGCCTCGCCGCGGCGAGCTCGAGCTCATTCGCATTCCGGAGGGGAGGGAGGGAT GGGGGACGAGTCGGAGGGGGAGACGGAGGAGTACCTGTTCAAGGTGGTGATCATCGGGGA CAGCGCGGTGGGGAAGAGCAACCTGCTGTCCCGCTACGCCCGCAACGAGTTCAATCTCCA CTCCAAGGCCACCATCGGCGTCGAGTTCCAGACGCAGAGCATGGACATCAACGGCAAGGA CGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGCGCTTCCGCGCCGTCACCTCCGC CTACTACCGCGGCGCCTTCGGCGCCCTCCTCGTCTACGACATCTCCCGCCGCTCCACCTT CGACAACGTCGGTCGCTGGCTCCAAGAACTCAACACACATTCGGACACGACTGTAGCCAA GATGTTGGTGGGCAACAAGTGTGATCTGGATAATATCCGTGAAGTGCCGGTAGAGGAAGG CAAAGCACTTGCTGAAGCTGAAGGGCTGTTCTTCATGGAGACCTCTGCTCTGGACTCGAC AAACGTGAGGACAGCTTTCGAGATCGTAATCAAGGAGATCTACAGCAACGTGAGCAGGAA GATCTTGAATTCGGACTCCTACAAGGCGGAGCTATCCCTCAATAGGGTAAGCATTGAGGG TGATTCGAAGGATGATCAGAAACAGTCAAACCGGTTTGGATGTTGCTAGGGGTTTTAGTA CATTATTATTATTGGATTCACTGTGATATGAAGGTTTTTTGTTCATTAATATTATTATTA TTATCTGTAAACTTGTAATCCAAATTGTTTTTTGGTTTGGTTACTCTGGTACACACTGTG ACACTGAGATACAAAGTGAGAGAAGAATAGTTGCTGGTAATGAATAGTTGAGAGGACTGC TTTGTGCTGTTACCTGAAAAA



consensusID : consensus_11920#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence
                              [GGAAGCAAAGCACCTTGCTGAAGCTGAAGGCTGTTCTTCATGGAGACCTCTGCTCTGGACCTCGACCAACCGTGAGGACCACGCTTTCCGAAGGATTCCGTAAATCCAAGGAGATCTACAAGCCAATGTGGAGCAAGGAAGATCTTGAATTCGGGACTCCTACAAGGCGGAGCTATCCCTCAATAGGGTAAGCCTTGAGGGTGATTCGAAGGATGATCAGAAACAGTCAAACCGGCTTTGGATGTTGCTAGGGGTTTTAGTACATTATTATTATTGGATTCACTGTGATATGAAGGTTTTTTTTCATTAATATTATTATTATTATCTGTAAACTTGTAATCCAATTGTTTTTTGTTTGGTTACTCTGGTACACACTGTGACACTGAGAAAAAAA]

[+] EMBL BI797733             [GGAAGCAAAGCACCTTGCTGAAGCTGAAGGCTGTTCTTCATGGAGACCTCTGCTCTGGACCTCGACCAACCGTGAGGACCACGCTTTCCGAAGGATTCCGTAAATCCAAGGAGATCTACAAGCCAATGTGGAGCAAGGAAGATCTTGAATTCGGGACTCCTACAAGGCGGAGCTATCCCTCAATAGGGTAAGCCTTGAGGGTGATTCGAAGGATGATCAGAAACAGTCAAACCGGCTTTGGATGTTGCTAGGGGTTTTAGTACATTATTATTATTGGATTCACTGTGATATGAAGGTTTTTTTTCATTAATATTATTATTATTATCTGTAAACTTGTAATCCAATTGTTTTTTGTTTGGTTACTCTGGTACACACTGTGACACTGAGAAAAAAA]


>consensus_11920#3 GGAAGCAAAGCACCTTGCTGAAGCTGAAGGCTGTTCTTCATGGAGACCTCTGCTCTGGAC CTCGACCAACCGTGAGGACCACGCTTTCCGAAGGATTCCGTAAATCCAAGGAGATCTACA AGCCAATGTGGAGCAAGGAAGATCTTGAATTCGGGACTCCTACAAGGCGGAGCTATCCCT CAATAGGGTAAGCCTTGAGGGTGATTCGAAGGATGATCAGAAACAGTCAAACCGGCTTTG GATGTTGCTAGGGGTTTTAGTACATTATTATTATTGGATTCACTGTGATATGAAGGTTTT TTTTCATTAATATTATTATTATTATCTGTAAACTTGTAATCCAATTGTTTTTTGTTTGGT TACTCTGGTACACACTGTGACACTGAGAAAAAAA



consensusID : consensus_11920#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 268
fasta sequence
                              [TAGCGGAAACTCGAGCTTACTGAAAGGTNCAAAAATTGTTGTCCCAGGTCAGGAGCCAGCCCCTCCAACCAANGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCGGAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAAGGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCANTCTTTTTTGTAAAAAAAAAAAAAAAAAAANNAAAAAAA]

[+] EMBL AU030863             [TAGCGGAAACTCGAGCTTACTGAAAGGTNCAAAAATTGTTGTCCCAGGTCAGGAGCCAGCCCCTCCAACCAANGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCGGAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAAGGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCANTCTTTTTTGTAAAAAAAAAAAAAAAAAAANNAAAAAAA]


>consensus_11920#4 TAGCGGAAACTCGAGCTTACTGAAAGGTNCAAAAATTGTTGTCCCAGGTCAGGAGCCAGC CCCTCCAACCAANGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCG GAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAA GGTCTACATGTGGACAGTTAACTCACATATGTTGTAATTTTATGAATCANTCTTTTTTGT AAAAAAAAAAAAAAAAAAANNAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11920#1      ---GGTCACTTGGTCTCCATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTT 57
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      CTTGGTCACTTGGTCTCCATCTCCTCTTCTTCTTCCACCTCCTCATGCCCATGGCGGCTT 60
consensus_11920#2      ------------------------------------------------------------
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      CCCATTGATCCCTTCAACACCGCTCTATTTTACCATCCAATTAGCAATTAGCGCTAGTTG 117
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      CCCATTGATCCCTTCAACACCGCTCTATTTTACCATCCAATTAGCAATTAGCGCTAGTTG 120
consensus_11920#2      ------------------------------------------------------------
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      AGTATCATCTCCACTATTTATTCTAATCCAGTGTAATCATCCTCCTTTCTTCTCCCAAAA 177
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      AGTATCATCTCCACTATTTATTCTAATCCAGTGTAATCATCCTCCTT-CTTCTCCCAAAA 179
consensus_11920#2      ------------------------------------------------------------
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      ACAATACCAAAGAAATCCAAGCACCGCCGCCTCTCTCTGCTCTACCCCCATCTCACCACC 237
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      ACAATACCAAAGAAATCCAAGCACCGCCGCCTCTCTCTGCTCTACCCCCATCTCGCCACC 239
consensus_11920#2      ------------------------------------------------------------
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      AAGCTCCCCCCTCCATTTTGATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTCG 297
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      AAGCTCCCCCCTCCATTTTGATACTAAAAATTCAGCAACTCGCCAGGGAGAGCAGGGTCG 299
consensus_11920#2      ------------------------------------------------------------
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      ATCCAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGAGAAGAAGAA 357
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      ATCCAAGAATCGATTGCTGTTCGGTTCTTGGATTGGAGAGACGGGACGGGAGAAGAAGAA 359
consensus_11920#2      -----------------------------CCTCTGCTTCTCCCACCACCTCACTACCTCT 31
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      GAAGAAGAAAGAAAAGATTGCAGTCTTTTGTGTTGTTGAGGTAGAAGGAGAAGAGGAGGA 417
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      GAAGAAGAAAGAAAAGATTGCAGTCTTTTGTGTTGTTGAGGTAGAAGGAGAAGAGGAGGA 419
consensus_11920#2      CGCCGCGAGAGCAGCAGCGCTCGTGTTCGGTCAAAAGCCTCGCCGCGGCGAGCTCGAGCT 91
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      GGTGGGGGAAAGATGTCGCGAGGAGGAGGGAGCTACGGGGAGGTGGGGCAGAAGATCGAC 477
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      GGTGGGGGAAAGATGTCGCGAGGAGGAGGGAGCTACGGGGAGGTGGGGCAGAAGATCGAC 479
consensus_11920#2      CATTCGCATTCCGGAGGGGAGGGAGGGATGGGGGACGAGTCGGAGGGGGAGACGGAGGAG 151
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      TACGTGTTCAAGGTGGTGCTGATCGGCGACTCCGCGGTGGGGAAGTCGCAGCTGCTGGCG 537
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      TACGTGTTCAAGGTGGTGCTGATCGGCGACTCCGCGGTGGGGAAGTCGCAGCTGCTGGCG 539
consensus_11920#2      TACCTGTTCAAGGTGGTGATCATCGGGGACAGCGCGGTGGGGAAGAGCAACCTGCTGTCC 211
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      CGGTTCGCCCGCAACGAGTT---------------------------------------- 557
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      GGGTTCGCCCGCAACGAGTTCAACCTCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAG 599
consensus_11920#2      CGCTACGCCCGCAACGAGTTCAATCTCCACTCCAAGGCCACCATCGGCGTCGAGTTCCAG 271
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      ------------------------------------------------------------
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      ACGCGAACCCTCCACATCGACGCCCGCACCGTCAAGGCCCAGACTCGGGACACCGCCGGC 659
consensus_11920#2      ACGCAGAGCATGGACATCAACGGCAAGGACGTCAAGGCCCAGATCTGGGACACCGCCGGC 331
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      ------------------------------------------------------------
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      CAGGAAAGGTACCGAGCAGTAACAAGTGCATACTACCGTGGTGCAGTGGGAGCTATGTTA 719
consensus_11920#2      CAGGAGCGCTTCCGCGCCGTCACCTCCGCCTACTACCGCGGCGCCTTCGGCGCCCTCCTC 391
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      -----------------------------------------------------------A 558
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      GTATATGACATAACAAAGCGTCAGTCATTTGATCATGTAGCTAGGTGGCTCGAGGAGTTA 779
consensus_11920#2      GTCTACGACATCTCCCGCCGCTCCACCTTCGACAACGTCGGTCGCTGGCTCCAAGAACTC 451
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      AGAGGCCATGCTGACAAGAACATTGTTATTATGCTTATCGGTAACAAATCTGATCTAGGC 618
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      AGAGGCCATGCTGACAAGAACATTGTTATTATGCTTATCGGTAACAAATCTGATCTAGGC 839
consensus_11920#2      AACACACATTCGGACACGACTGTAGCCAAGATGTTGGTGGGCAACAAGTGTGATCTGGAT 511
consensus_11920#3      ------------------------------------------------------------
                                                                                   

consensus_11920#1      ACGCTTCGGGTTGTACCGACTGA-GGATGCAAAGGAATTTGCTGAGCGTGAGAATCTCTT 677
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      ACGCTTCGGGTTGTACCGACTGA-GGATGCAAAGGAATTTGCTGAGCGTGAGAATCTCTT 898
consensus_11920#2      AATATCCGTGAAGTGCCGGTAGAGGAAGGCAAAGCAC-TTGCTGAAGCTGAAGGGCTGTT 570
consensus_11920#3      ------------------------GGAAGCAAAGCACCTTGCTGAAGCTGAAGG-CTGTT 35
                                                                                   

consensus_11920#1      CTTCATGGAGACCTCTGCTCTTGAGTCTACCAATGTTGAAAATGCTTTCATGACCGTACT 737
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      CTTCATGGAGACCTCTGCTCTTGAGTCTACCAATCTTGAAAATGCTTTCATGACCGTACT 958
consensus_11920#2      CTTCATGGAGACCTCTGCTCTGGAC-TCGACAA----------AC-GTGAGGACA--GCT 616
consensus_11920#3      CTTCATGGAGACCTCTGCTCTGGACCTCGACCA----------ACCGTGAGGACCACGCT 85
                                                                                   

consensus_11920#1      TACGGAGATTTACCGTATTGTCAGCAAGAAAAACCTTGTTGCAAATGAGGAGGTTGATTC 797
consensus_11920#4      ------------------------------------------------------------
consensus_11920#0      TACGGAGATTTACCGTATTGTCAGCAAGAAAAACCTTGTTGCAAATGAGGAGGTTGATTC 1018
consensus_11920#2      TTCGAGA-----TCGTAA--TCAAGGAGATCTACAG--CAACGTG-AGCA-GGAAGATCT 665
consensus_11920#3      TTCCGAAGGATTCCGTAAATCCAAGGAGATCTACAAGCCAATGTGGAGCAAGGAAGATCT 145
                                                                                   

consensus_11920#1      TAGCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTCCCAGGTCAGGAGCCAGC 857
consensus_11920#4      TAGCGGAAACTCGAGCTTACTGAAAGGTNCAAAAATTGTTGTCCCAGGTCAGGAGCCAGC 60
consensus_11920#0      TAGCGGAAACTCGAGCTTACTGAAAGGTACAAAAATTGTTGTCCCAGGTCAGGAGCCAGC 1078
consensus_11920#2      TG-----AATTCGG-ACTCCTACAAGGCGGAGCTATCCCTCAATAGGGTAAGCATTGAGG 719
consensus_11920#3      TG-----AATTCGGGACTCCTACAAGGCGGAGCTATCCCTCAATAGGGTAAGCCTTGAGG 200
                       *      ** ***    * **  ****   *   **   *      *** **     ** 

consensus_11920#1      CCCTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCG 917
consensus_11920#4      CCCTCCAACCAANGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCG 120
consensus_11920#0      CCCTCCAACCAAAGCATCATGTTGTATGTCCTAGGCATAGCATTGTACTGTGTTGTTTCG 1138
consensus_11920#2      GTGATTCGAAGGATGATCAGAAACAGTCAAACCGG-TTTGGATGTTGCTAGGGGTTTTAG 778
consensus_11920#3      GTGATTCGAAGGATGATCAGAAACAGTCAAACCGGCTTTGGATGTTGCTAGGGGTTTTAG 260
                                      ****       *      **  * * **  * **  *   *** *

consensus_11920#1      GAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAA 977
consensus_11920#4      GAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAA 180
consensus_11920#0      GAGTTTACTCCTGCCATATCAACACTGAATAGCTGGGATTCCTGTGAGTAAAGATGAAAA 1198
consensus_11920#2      TACATTATTATTATTGGATTCACTGTGA-TATGAAGGTTTTTTGTTCATTAATATTATTA 837
consensus_11920#3      TACATTATTATTATTGGATTCACTGTGA-TATGAAGGTTTTTT-TTCATTAATATTATTA 318
                        *  *** *  *     **  **  *** **    ** **  * *   * ** ** *  *

consensus_11920#1      GGTCTACATGTGGACAGTTAACTCAC-ATATGTTGTAATTTTATGAATC-ACTCTTTTTT 1035
consensus_11920#4      GGTCTACATGTGGACAGTTAACTCAC-ATATGTTGTAATTTTATGAATC-ANTCTTTTTT 238
consensus_11920#0      GGTCTACATGTGGACAGTTAACTCAC-ATATGTTGTAATTTTATGAATC-ACTCTTTTTT 1256
consensus_11920#2      TTATTATCTGTAAACTTGTAATCCAAATTGTTTTTTGGTTTGGTTACTCTGGTACACACT 897
consensus_11920#3      TTATTATCTGTAAACTTGTAATCCAA-TTGTTTTTTG-TTTGGTTACTCTGGTACACACT 376
                           **  ***  **   ***  **   * * ** *  ***  * * **   *      *

consensus_11920#1      GTATCTGATTGTGTGATGGTGTGTGTAGTCATTTAGAGCATTCTCAGATATAATTGGCCC 1095
consensus_11920#4      GTAAAAAAAAAAAAAAAAAAANNAAAAAAA------------------------------ 268
consensus_11920#0      GTATCTGATTGTGTGATGGTGTGTGTAGTCAAAAAA------------------------ 1292
consensus_11920#2      GTGACACTGAGATACAAAGTGAGAGAAGAATAGTTGCTGGTAATGAATAGTTGAGAGGAC 957
consensus_11920#3      GTGACACTGAGAAAAAAA------------------------------------------ 394
                       **             *                                            

consensus_11920#1      AATCTTATCTGTTTGCTATATCATTC 1121
consensus_11920#4      --------------------------
consensus_11920#0      --------------------------
consensus_11920#2      TGCTTTGTGCTGTTACCTGAAAAA-- 981
consensus_11920#3      --------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)