cluster # 11929

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Oryza sativa
cluster # 11929 cluster # 11929 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11929#0 length = 486 sequences # 6
consensus_11929#1 length = 406 sequences # 1

consensus_11929#2 length = 220 sequences # 1
consensus_11929#3 length = 184 sequences # 1

consensusID : consensus_11929#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 486
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTGCATCCTTAAAGTGCAGCGTTGGGGATATTTATTCCATTATTAAAAAGCAGCAAATTTGCAATACTACAATCGACGTC-GCGAGAACCCCAACGCGTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCGCAGGCGAGGCCGCAGCGCTCGCCGGCGACGGCGGCGTGCAGCAGCAGCACGTAGAGGAGCTGCGTGAACGCCAGCGTCACGGTGAGCCCCTCCAGCGCGCGCATCCGCCACCCGCGCGCGGCGCCGGCGGGCCCCGCCGCGGCGGCGTCGTGGATCTCCCTGCAC-GCCACCCCGAACGCCAGCGCGGTGGCCGCCCA-CGCGGCGGTGCCGAGCG-ACGCCGCG-GCG-GCGCCTGCGCCGCTTAGAGGA]

[+] EMBL BI796896             [TTTTTTTTTTTTTTTTTTTTTTTTTCTCATCCTTAAAGTGCACCGT  GGGATATTTATTCCATTATTAAAAAGCAGCAAATTTGCAATACTACAATCGACGTCAGCGAGAACCCCAACGCGTACACATCA CAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCGCAGGCGAGGCCGCAGCGCTCGCCGGCGACGGCGGCGTGCAGCAGCAGCACGTAGAGGAGCTGCGTGAACGCCAGCGTCACGGTGAGCCCCTCCAGCGCGCGCATCCGCCACCCGCGCGCGGCGCCGGCGGGCCCCGCCGCGGCGGCGTCGTGGATCT CCTGCAC GCCACCCCGAACGCCAGCGCGGT GCCGCCCA CGCGGC GTGCCGAGCG ACGCCGCGCGCGAGC CCTGCGCCGCTTAGAGGA]
[-] EMBL C99421               [        TTTTTTTTTTTTTTTTNTGCATCCTTAAAGTGCAGCGTTGGGGATATTTATTCCATTATTAAAAAGCAGCAAATTTGCAATACTACAATCGACGTC GCGAGAACCCCAACGNGTACACATCAGCAAAACACATTTCCCGNTGACATAACACAAACANGNCCGNTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCNATCGAGATG                                                                                                                                                                                                                                                                            ]
[-] EMBL C99408               [               TTTTTTTTTTTGCATCCTTAAAGTGCAGCGTTGGGGATATTTATTCCATTATTAAAAAGCAGCAAATTTGCAATACTACAATCGACGTC GCGAGAACCCCAACGCGTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGNGGCGCAGGCGAGGCCGCAGCGNTCGCCGGCGACGG GTCGTGCAGCAGCAGCACGTAGAGGAGCTNCGTGAACGCCAGCGTCACGGTGAGCCCCTNCAG                                                                                                                                                            ]
[-] EMBL C99419               [                    TTTTTTGCATCCTTAAAGTGCAGCGTTGGGGATATTTATTCCATTATTAAAAAGCAGCAAATTTGCAATACTACAATCGACGTC GCGAGAACCCCAACGCGTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGNGGNGCAGGCGAGGCCGCAGCGNTCGCCGGCGACGG GNCGTGCAGCAGCAGCACGTAGAGGAGCTGCGTGAACGCCAGCGTCACGGTGAGCCCCTCCAGCGCGCGCATCCGCCACCCGCGCGCGGCGCCGGCGGGCCCCG CGCGGCGGCGTCGTG                                                                                                   ]
[-] EMBL AU182656             [                                       GCAGCGGTGGGGATATTTATTCCATTATTAAAAAGCAGCAAATTTGCAATACTACAATCGACGTC GCGAGAACCCCAACGCGTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCGCAGGCGAGGCCGCAGCGCTCGCCGGCGACGGCGGCGTGCAGCAGCAGCACGTAGAGGAGCTGCGTGAACGCCAGCGTCACGGTGAGCCCCTCCAGCGCGCGCATCCGCCACCCGCGCGCGGCGCCGGCGGGCCCCGCCGCGGCGGCGTCGTGGATCTCCCTGCACTGCCACCCCGAACGCCAGCGCGGTGGCCGCCCA CGCGGCGGTGCCGAGCG ACGCCGCG GCG GCG                  ]
[-] EMBL AU197309             [                                                                                                                                                   tttttttTAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCGCA GCGAGGCCGCAGCGCTC CCGGCGACGGCGGCGTGCAGCAGCAGCACGTAGAGGAGCTGCGTGAACGCCAGCGTCACGGTGAGCCCCTCCAGCGCGCGCATCCGCCAACCCCGCGCGGCGCC GCGGGCNCCCCCGCGGCGGCGTCGTGGATCTCCCTGCAC GCCACCCCGAACGCCAGCGCGGTCGGCGCCCANCG GGCGGTGCCGAGCGAACGCCGCG GCG GCGa                 ]




>consensus_11929#0
TTTTTTTTTTTTTTTTTTTTTTTTTTGCATCCTTAAAGTGCAGCGTTGGGGATATTTATT
CCATTATTAAAAAGCAGCAAATTTGCAATACTACAATCGACGTCGCGAGAACCCCAACGC
GTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTA
TTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCG
CAGGCGAGGCCGCAGCGCTCGCCGGCGACGGCGGCGTGCAGCAGCAGCACGTAGAGGAGC
TGCGTGAACGCCAGCGTCACGGTGAGCCCCTCCAGCGCGCGCATCCGCCACCCGCGCGCG
GCGCCGGCGGGCCCCGCCGCGGCGGCGTCGTGGATCTCCCTGCACGCCACCCCGAACGCC
AGCGCGGTGGCCGCCCACGCGGCGGTGCCGAGCGACGCCGCGGCGGCGCCTGCGCCGCTT
AGAGGA

consensusID : consensus_11929#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [CACGCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCGCAGTGCGAGGCCCAGCAGCTCAGCACGGCGACGGCGGCAGTGCAGCAGCAGCACGTAGAGGAGCTGCAGTGAACAGCACAGCGTCACGGTGAGCCCCTCCAGCAGCGCGCATCCAGCCACCCAGCAGCAGCAGGCAGCCGGCAGGGCCCACACACGCGCAGGCATTCGTGGATCTCCCTGCACGCCACCCCCAGAACAGCCAGCAGCGGTGCCAGCCCACGCGGCGGTGCCAAGCGACAGCCGCGCGGCGAGCACCTGCAGCCAGCTCTAGAGATCCAAGCTAACCGCGGGGTGCACGTCATAGCTC]

[+] EMBL BI796399             [CACGCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCGCAGTGCGAGGCCCAGCAGCTCAGCACGGCGACGGCGGCAGTGCAGCAGCAGCACGTAGAGGAGCTGCAGTGAACAGCACAGCGTCACGGTGAGCCCCTCCAGCAGCGCGCATCCAGCCACCCAGCAGCAGCAGGCAGCCGGCAGGGCCCACACACGCGCAGGCATTCGTGGATCTCCCTGCACGCCACCCCCAGAACAGCCAGCAGCGGTGCCAGCCCACGCGGCGGTGCCAAGCGACAGCCGCGCGGCGAGCACCTGCAGCCAGCTCTAGAGATCCAAGCTAACCGCGGGGTGCACGTCATAGCTC]




>consensus_11929#1
CACGCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGA
TCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCGCAGTGCGAGGCCCAGCAGCTC
AGCACGGCGACGGCGGCAGTGCAGCAGCAGCACGTAGAGGAGCTGCAGTGAACAGCACAG
CGTCACGGTGAGCCCCTCCAGCAGCGCGCATCCAGCCACCCAGCAGCAGCAGGCAGCCGG
CAGGGCCCACACACGCGCAGGCATTCGTGGATCTCCCTGCACGCCACCCCCAGAACAGCC
AGCAGCGGTGCCAGCCCACGCGGCGGTGCCAAGCGACAGCCGCGCGGCGAGCACCTGCAG
CCAGCTCTAGAGATCCAAGCTAACCGCGGGGTGCACGTCATAGCTC

consensusID : consensus_11929#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [ATTCCATTATTAAAAAGTAGCAAATTTGCAATACTACAATCGTCGTCGCGAGAACCCCAACGCGTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGTGTAGGCGAGATGCTCCAACGCCATGGCTGCTAATTAAC]

[-] EMBL AA750860             [ATTCCATTATTAAAAAGTAGCAAATTTGCAATACTACAATCGTCGTCGCGAGAACCCCAACGCGTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGTGTAGGCGAGATGCTCCAACGCCATGGCTGCTAATTAAC]




>consensus_11929#2
ATTCCATTATTAAAAAGTAGCAAATTTGCAATACTACAATCGTCGTCGCGAGAACCCCAA
CGCGTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTA
TTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCG
GTGTAGGCGAGATGCTCCAACGCCATGGCTGCTAATTAAC

consensusID : consensus_11929#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [TTTTTTTTAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCNGCNAGGCGAGGCCCAGCGCTCGCGCGGCGNTNCGTNGNGGATCTCCCTGCACGCCACCCCGAACGCCAGCGCGGTGGCCGCCACGCGGTTGCC]

[-] EMBL C99400               [TTTTTTTTAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCNGCNAGGCGAGGCCCAGCGCTCGCGCGGCGNTNCGTNGNGGATCTCCCTGCACGCCACCCCGAACGCCAGCGCGGTGGCCGCCACGCGGTTGCC]




>consensus_11929#3
TTTTTTTTAACACAAACACGCCCGGTTATTATTATTTGGAAATTAATGAAATTGATCCAG
AGAGCTCGATCGAGATGATCATGCGTCGGCNGCNAGGCGAGGCCCAGCGCTCGCGCGGCG
NTNCGTNGNGGATCTCCCTGCACGCCACCCCGAACGCCAGCGCGGTGGCCGCCACGCGGT
TGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11929#1      ------------------------------------------------------------
consensus_11929#3      ------------------------------------------------------------
consensus_11929#0      TTTTTTTTTTTTTTTTTTTTTTTTTTGCATCCTTAAAGTGCAGCGTTGGGGATATTTATT 60
consensus_11929#2      ---------------------------------------------------------ATT 3
                                                                                   

consensus_11929#1      ------------------------------------------------------------
consensus_11929#3      ------------------------------------------------------------
consensus_11929#0      CCATTATTAAAAAGCAGCAAATTTGCAATACTACAATCGACGTCGCGAGAACCCCAACGC 120
consensus_11929#2      CCATTATTAAAAAGTAGCAAATTTGCAATACTACAATCGTCGTCGCGAGAACCCCAACGC 63
                                                                                   

consensus_11929#1      ---------------------CACGCGGTGACATAACACAAACACGCCCGGTTATTATTA 39
consensus_11929#3      --------------------------TTTTTTTTAACACAAACACGCCCGGTTATTATTA 34
consensus_11929#0      GTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTA 180
consensus_11929#2      GTACACATCAGCAAAACACATTTCCCGGTGACATAACACAAACACGCCCGGTTATTATTA 123
                                                   *    ***************************

consensus_11929#1      TTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCG 99
consensus_11929#3      TTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCNGCN 94
consensus_11929#0      TTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGCG 240
consensus_11929#2      TTTGGAAATTAATGAAATTGATCCAGAGAGCTCGATCGAGATGATCATGCGTCGGCGGTG 183
                       ******************************************************** *  

consensus_11929#1      CAGTGCGAGGCCCAGCA---GCTCAGCACGGCGACGGCGGCAGTGCAGCA-GCAGCACGT 155
consensus_11929#3      AGG--CGAGGCCCAGCGCTCGCGCGGCGNTNCGTNGNGGATCTCCCTGCACGCCACCCCG 152
consensus_11929#0      CAG-GCGAGGCC--GCA---GCGCTCGCCGGCGACGGCGGC-GTGCAGCA-GCAGCACGT 292
consensus_11929#2      TAG-GCGAGATGCTCCAACGCCATGGCTGCTAATTAAC---------------------- 220
                         *  ****      *     *                                      

consensus_11929#1      AGAGGAGCTGCAGTGAACAGCACAGCGTCACGGTGAGCCCCTCCAGCAGCGCGCATCCAG 215
consensus_11929#3      AACGCCAGCGCGGTGGCCGCCACGCGGTTGCC---------------------------- 184
consensus_11929#0      AGAGGAGCTGC-GTGAACGCCA--GCGTCACGGTGAGCCCCTCCAGC-GCGCGCATCC-G 347
consensus_11929#2      ------------------------------------------------------------
                                                                                   

consensus_11929#1      CCACCCAGCAGCAGCAGGCAGCCGGCAGGGCCCACACACGCGCAGGCATTCGTGGATCTC 275
consensus_11929#3      ------------------------------------------------------------
consensus_11929#0      CCACCCGCGCGCGGC-----GCCGGCGGGCCCCGC---CGCGGCGGCGT-CGTGGATCTC 398
consensus_11929#2      ------------------------------------------------------------
                                                                                   

consensus_11929#1      CCTGCACGCCACCCCCAGAACAGCCAGCAGCGGTGCCAGCCCACGCGGCGGTGCCAAGCG 335
consensus_11929#3      ------------------------------------------------------------
consensus_11929#0      CCTGCACGCCACCCCGAACGCCAGC----GCGGTGGCCGCCCACGCGGCGGTGCCGAGCG 454
consensus_11929#2      ------------------------------------------------------------
                                                                                   

consensus_11929#1      ACAGCCGCGCGGCGAGCACCTGCAGCCAGCTCTAGAGATCCAAGCTAACCGCGGGGTGCA 395
consensus_11929#3      ------------------------------------------------------------
consensus_11929#0      ACGCCGCGGCGGCGCCTGCGCCGCTTAGAGGA---------------------------- 486
consensus_11929#2      ------------------------------------------------------------
                                                                                   

consensus_11929#1      CGTCATAGCTC 406
consensus_11929#3      -----------
consensus_11929#0      -----------
consensus_11929#2      -----------