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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1171 fasta sequence
[GGCCTTGCACTTCCTTCATCTCTCTCTCTCTCCCCCTCTCTCTCTTCTTCCGCCGCCGCCGCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGAC-TCGGTTCACGTCTTGCTCAAGCAGGCTCTGC-GGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGCTGTGAAGCTTCTCAA-GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGA-CCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGG--GGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATACATAAATCTAGTTTTGACAGTGAAAGAAGGCAAGCATGAA]
[+] EMBL CF329705 [GGCCTTGCACTTCCTTCATCTCTCTCTCTCTCCCCCTCTCTCTCTTCTTCCGCCGCCGCCGCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTG ]
[+] EMBL AK110667 [ TCTCTCTCTCCCCCTCTCTCTCTTCTTCCGCCGCCGCCGCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGAC TCGGTTCACGTCTTGCTCAAGCAGGCTCTGC GGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGCTGTGAAGCTTCTCAA GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGA CCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGG GGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCCCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATACATACATCTAGTTTTGACAGTGAAAGAAGGCAAGCATGAA]
[+] EMBL CF326793 [ GCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGAC TCGGTTCACGTCTTGCTCAAGCAGGCTCTGC GGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGCTGTGAAGCTTCTCAA GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGA CCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGA ]
[+] EMBL C27127 [ CGCCGACG CAGCTGCGTGCTGAAGTAAGCGGATGGACCTCACTCGCCGGCGCCGC G NGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAG GC GACTTCGGTTCACGTCTTGCTCAAGCAGGCTCTNCGGGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTAATTGTTAATTCAATATCACTTCTTACANCAGCAGACGCTGTGAAG TTCTCAATGTTCTTCATATTGCTTATG AATCGAGGGGTNCAGTGTTGG TTCCTn ]
[-] EMBL CF326794 [ AAGCTTCTCAA GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGG GGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACATGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATACATAAAaaa ]
[+] EMBL CF326935 [ TCTCAA GTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGA CCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGA CTGGGNGGGGTGTTACTGATGCTTNTGAGCATTCANATGGAAGTGAGGTTATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTG ]
[-] EMBL CF326936 [ GGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGG GGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTTATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTTTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAAaa ]
[-] EMBL CF329706 [ CTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATAAAAAA ]
consensusID : consensus_11930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[CATAAAGAGTTGTCTCCGTATGCACCACTTACAACCTCCTTTAGTGATGTGCATCAGGATGTCTGCATCTAGGCTATACAGCCCCTTGGAATTTGTGGATGTCAAAATTACTGTGAATATGTCAGCTTTTAGTGCACTAGTGGAGACATAATAACAATTATAAGTCATGTGCTCATGTTTATTTTTGGATTTTACTATTACTGATTGCATTTCTCTCAGCTAATTGATGCAAGAACATCGACCTTCAAATTATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCCCCGATAATTTATGAGGGCAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATTTGGGGGGTGTTACTGATGCTTTTGAGCATTCGGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATTTTCGTGATGAAAGTTGGAGTTGTGAGTTAACCCCTGATGGGCAGAAGAAGTCGATAGGATAGTTTTTGAACCCTTTTCCCATTGATTTTTTTTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760076 [CATAAAGAGTTGTCTCCGTATGCACCACTTACAACCTCCTTTAGTGATGTGCATCAGGATGTCTGCATCTAGGCTATACAGCCCCTTGGAATTTGTGGATGTCAAAATTACTGTGAATATGTCAGCTTTTAGTGCACTAGTGGAGACATAATAACAATTATAAGTCATGTGCTCATGTTTATTTTTGGATTTTACTATTACTGATTGCATTTCTCTCAGCTAATTGATGCAAGAACATCGACCTTCAAATTATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCCCCGATAATTTATGAGGGCAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATTTGGGGGGTGTTACTGATGCTTTTGAGCATTCGGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATACCTGATGAGCTCTTGATTTTCGTGATGAAAGTTGGAGTTGTGAGTTAACCCCTGATGGGCAGAAGAAGTCGATAGGATAGTTTTTGAACCCTTTTCCCATTGATTTTTTTTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGCCTGCAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11930#0 GGCCTTGCACTTCCTTCATCTCTCTCTCTCTCCCCCTCTCTCTCTTCTTCCGCCGCCGCC 60
consensus_11930#1 ------------------------------------------------------------
consensus_11930#0 GCCGCCGCTGCTCTCTCGCTTCGTTTGTCTCCACCGGCGCCGACGCCAGCTGCGTGCTGA 120
consensus_11930#1 ------------------------------------------------------------
consensus_11930#0 AGTAAGCGGATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCC 180
consensus_11930#1 ------------------------------------------------------------
consensus_11930#0 CTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCC 240
consensus_11930#1 ------------------------------------------------------------
consensus_11930#0 ACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCA 300
consensus_11930#1 ------------------------------------------------------------
consensus_11930#0 GGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGACTCGGTT 360
consensus_11930#1 ------------------------------------------------------------
consensus_11930#0 CACGTCTTGCTCAAGCAGGCTCTGCGGGCTGATGACCACGCATCCTTGCTCAATTGCTTG 420
consensus_11930#1 --------------------------------------------CATAAAGAGTTGTCTC 16
* * * *** *
consensus_11930#0 TACAATAAAGACC-ACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGC 479
consensus_11930#1 CGTATGCACCACTTACAACCTCCTTTAGTGATGTGCATCAGGATGTCTGCATCTAG--GC 74
* * ** **** ** ** * **** * * ** **
consensus_11930#0 TGTGAAGCTTCTCAAGTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTC 539
consensus_11930#1 TATACAGCCCCTTGGAATTT----GTGGATGTCAAAATTACTGTGAATATGTCAGCTTTT 130
* * *** ** * * * * * *** * * * * * ***
consensus_11930#0 CTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGA 599
consensus_11930#1 AGTGCACTAGTGGAGACATAATAA---CAATTATAAGTCATGTGCTCATGTTTATTTTTG 187
*** * *** ** * * ** * * * ** **** *
consensus_11930#0 GTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCTT 659
consensus_11930#1 GATTTTACTATTACTGATTGCATT--TCTCTCAGCTAATTGATGCAAGAACATCGACCTT 245
* ** ** * *** * * *** *** **************************
consensus_11930#0 CAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGA 719
consensus_11930#1 CAAATTATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGA 305
***** ******************************************************
consensus_11930#0 TGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGA 779
consensus_11930#1 TGGATCCGGAGAGGAAGAAGGATCCCCCCCGATAATTTATGAGGGCAAGGATACTGATGA 365
*************************** **************** ***************
consensus_11930#0 TGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGGGGGGTGT 839
consensus_11930#1 TGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATTTGGGGGGTGT 425
************************************************* **********
consensus_11930#0 TACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATAC 899
consensus_11930#1 TACTGATGCTTTTGAGCATTCGGATGGAAGTGAGGTCATGAGCGACTGATGAATCGATAC 485
*********** ********* **************************************
consensus_11930#0 CTGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGC 959
consensus_11930#1 CTGATGAGCTCTTGATTTTCGTGATGAAAGTTGGAGTTGTGAGTTAACCCC-TGATGGGC 544
**************** ********** ********************* * ********
consensus_11930#0 AGAAGAAGTCGATAGGATAGTTTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTG 1019
consensus_11930#1 AGAAGAAGTCGATAGGATAGTTTTTGAACCCTTTTCCCATTGATTTTTTTTGATGAGTTG 604
*********************** ***** ****** ************ **********
consensus_11930#0 CGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGC 1079
consensus_11930#1 CGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTAATGGGTAACTCAGTCTTGC 664
************************************************************
consensus_11930#0 CTGCACTTGTGAAACACATATACTCTTTACCATGAAAATACCCTTTTAGATACATAAATC 1139
consensus_11930#1 CTGCAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------- 692
***** *** * * * *
consensus_11930#0 TAGTTTTGACAGTGAAAGAAGGCAAGCATGAA 1171
consensus_11930#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||