These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1329 fasta sequence [TTCTACATAGTAAAATCTAATTGTTTTATTTACTAGAATGATAAAATTTGAGTAAGCTTATACAAATATGCACATGTATATCCACAAAACAACTATTCAAAAACCGAACATGTATAGAAAAAATATGCCCAAACTAAGTAAGTTGTTATATCACTTCTTAAGTTTGTACAAAATCTTACCCATCTTATAAGTTGTTGCACCTATATGTTTATTTATTAACTTCTTGGACTAAATTGCACTCATATACGAAGTTTTTAAGTGTGTGATACTTGAGGGGACAACCTTCCCTCGCGTCGTCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA-AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC-TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCCTGTCCCCTNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AK105215 [TTCTACATAGTAAAATCTAATTGTTTTATTTACTAGAATGATAAAATTTGAGTAAGCTTATACAAATATGCACATGTATATCCACAAAACAACTATTCAAAAACCGAACATGTATAGAAAAAATATGCCCAAACTAAGTAAGTTGTTATATCACTTCTTAAGTTTGTACAAAATCTTACCCATCTTATAAGTTGTTGCACCTATATGTTTATTTATTAACTTCTTGGACTAAATTGCACTCATATACGAAGTTTTTAAGTGTGTGATACTTGAGGGGACAACCTTCCCTCGCGTCGTCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTG ] [+] EMBL AK061361 [ GTTTTTAAGTGTGTGATACTTGAGGGGACAACCTTCCCTCGCGTCGTCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCC ] [+] EMBL AK103354 [ GCGTCGTCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCC ] [+] EMBL CB671237 [ TCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGAT ] [+] EMBL C91727 [ CTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACANAGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACNGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCA CGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTCTTGGATCCGGCGGTTGCGCGACGTCCGGTGGTGTTTTGAGCGTTCGGCGCCGGCAACCAANCTTGCCCGTTGNTTGCGATTGTTGTta ] [+] EMBL AU173115 [ CGGCACGGGAGGCGACNACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGNGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGNGGGGTTGG ] [-] EMBL CB671238 [ TCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCCT ] [+] EMBL AU075446 [ GTTCTAGGNGTTTTTTNCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTNTAAACTGGATCAACTCTCTTTTTNTATNGTAAATTGCAGGNGCTCCCTGCNTGTCCCCTNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [TCGGGTGAAAACCTTGGATTCGTTAGGATCGGNTGTTGTCGCCGTTCTGTCAGCGAATCCTTCAAGAAGGTTACGCTGACAGAACGGGACAACTAAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCCTGTCCCCTCGAA] [+] EMBL AU075445 [TCGGGTGAAAACCTTGGATTCGTTAGGATCGGNTGTTGTCGCCGTTCTGTCAGCGAATCCTTCAAGAAGGTTACGCTGACAGAACGGGACAACTAAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCCTGTCCCCTCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11937#0 TTCTACATAGTAAAATCTAATTGTTTTATTTACTAGAATGATAAAATTTGAGTAAGCTTA 60 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 TACAAATATGCACATGTATATCCACAAAACAACTATTCAAAAACCGAACATGTATAGAAA 120 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 AAATATGCCCAAACTAAGTAAGTTGTTATATCACTTCTTAAGTTTGTACAAAATCTTACC 180 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 CATCTTATAAGTTGTTGCACCTATATGTTTATTTATTAACTTCTTGGACTAAATTGCACT 240 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 CATATACGAAGTTTTTAAGTGTGTGATACTTGAGGGGACAACCTTCCCTCGCGTCGTCCT 300 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 CCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCC 360 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 TCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACAAGGACGGC 420 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 GGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCG 480 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 GCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGC 540 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 GACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGT 600 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 TGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTCTGGATCCGGCGGTG 660 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 GCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTG 720 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 GCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCT 780 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 CAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAG 840 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 GTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAG 900 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 GGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGAC 960 consensus_11937#1 ------------------------------------------------------------ consensus_11937#0 GCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGA 1020 consensus_11937#1 ---------------TCGGGTGAAAACCTTGGA---TTCGTTAGGATCGGNTGTTGTCGC 42 ** * ***** ***** * * * consensus_11937#0 AACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGC 1080 consensus_11937#1 CGTTCTGTCAGCGAATCCTTCAAGAAGGTTACGCT--GACAGAACGG-------GACAAC 93 *** * *** * * **** * * *** * * ** * consensus_11937#0 GTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTG 1140 consensus_11937#1 TAAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTG 153 ********************************************************** consensus_11937#0 GTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTA 1200 consensus_11937#1 GTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTA 213 ************************************************************ consensus_11937#0 AGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATT 1260 consensus_11937#1 AGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATT 273 ************************************************************ consensus_11937#0 GCAGGAGCTCCCTGCCTGTCCCCTNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1320 consensus_11937#1 GCAGGAGCTCCCTGCCTGTCCCCTCGAA-------------------------------- 301 ************************ * * consensus_11937#0 AAAAAAAAA 1329 consensus_11937#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||