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Oryza sativa
cluster # 11940 cluster # 11940       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11940#0 length = 1618 sequences # 8  
consensus_11940#1 length = 690 sequences # 1  

consensusID : consensus_11940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1618
fasta sequence
                              [ACGCGAGAAGCGAACGCGACCCGGCCACCACCACACCTCTCCTCCAGCTCGCGGTCTCCTCCTCCTCGGCTCCTCCCAAAAAAGAGCTCTAGAATAAAAGAGAAGGGG-AAACCCCCCCCCCAAATCCCACGCCGCTCGGCTCACCGAGTGCTGCATCGGATCGGATCGGGACGGCGGTGGCGGACGCGAGATGTGGGAGTCGGTGGCGCTCACGCTGGCCGGCGCCGCCGGAAACAACGTCGGCAAGGTCCTCCAGAAGAAGGGCACCCACATCCTCCCTCCCCTCTCCTTCAAGCTCAAGGTGATTAGGGCGTACGCGTTGAACAGGCTCTGGATCAGCGGATTCCTCATGGACATGTGCGGCGCCGCGCTCATGCTCACCGCGCTCTCGCAGGCGCCGGTCTCCGTCGTGCAGCCGATCGCCGGCTGTGGCCTCGCCATACTCTGCGTGTTCTCCCATTTCTACCTCAAGGAGTCCATGAACGGGCTCGACTGGGTCGCCATCACATTGGCCGGTCTAGGCACGATAGGAGTTGGTGTTGGAGGCGAGGAGCAGAAAGTGGACAAAATTCCACTGTTCAATATACCTTGGCTGGTGCTCTCCATTGTCATCTTGTTTGTAGGTTCTTCTCAACACTTGGCTTCATATCTACAAAAGGCAAAGGCGTGAACAAGAGTTGACTGGACCTGAAGTGATCGAGGAGATCATATATGGATTGGAATCTGGCATTCTGTTTGGGATTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTGAAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTGCTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCACTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTA-GCTGGTATGATTGCG-CTTGATGAACATCTTCCCACA-GCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGT-TCTTCATTATTA-CA-GGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTAC-CCAGATCTATGCAGAAG-TTTTTGAAGAGTAATGTGGAGCGTACCCACAGCA-TCAGGAGGCCTAGCTCAGCGCGAGGAAAGGACCCCATCCCAAGCACAACAATCCAT-GCATCCACATTGCATCTGCTAACATCTCCATCGAAAGAGAAGGCCTAGA-AAAAG-TTCCTGCTGGA-GCAAGA-TTGTTTTGGCACCTCA-AATGTGCCA-TGTTGTTTAATTGA-CTCCTG-ATGTG-AATGTAAAGTCTAGAGTAGCA-TCTTTAAAGTTTGGG-TTGGTGA-TA-TCGTATACTGCTT-GTCTGCT-CTTATTGATCTATACAGCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCATC-TTTAGCTTCGGTTAGTTGGCCACTGCTAAATCGGTTTGTTCTGTTGCATGAAAGTTTTTTTTTTTCTTTTGTTTGAGGTACTGACTACTGTTATGCCTTTTCTCGAGCTTGTGTAAGTAAAGGCATTTAACAGCTCTTTGTTATGTTTTTACACCAGAATGACATCTACATAAGCAGTGTTATGTTTTTAAAAA]

[+] EMBL AK073555             [ACGCGAGAAGCGAACGCGACCCGGCCACCACCACACCTCTCCTCCAGCTCGCGGTCTCCTCCTCCTCGGCTCCTCCCAAAAAAGAGCTCTAGAATAAAAGAGAAGGGG AAACCCCCCCCCCAAATCCCACGCCGCTCGGCTCACCGAGTGCTGCATCGGATCGGATCGGGACGGCGGTGGCGGACGCGAGATGTGGGAGTCGGTGGCGCTCACGCTGGCCGGCGCCGCCGGAAACAACGTCGGCAAGGTCCTCCAGAAGAAGGGCACCCACATCCTCCCTCCCCTCTCCTTCAAGCTCAAGGTGATTAGGGCGTACGCGTTGAACAGGCTCTGGATCAGCGGATTCCTCATGGACATGTGCGGCGCCGCGCTCATGCTCACCGCGCTCTCGCAGGCGCCGGTCTCCGTCGTGCAGCCGATCGCCGGCTGTGGCCTCGCCATACTCTGCGTGTTCTCCCATTTCTACCTCAAGGAGTCCATGAACGGGCTCGACTGGGTCGCCATCACATTGGCCGGTCTAGGCACGATAGGAGTTGGTGTTGGAGGCGAGGAGCAGAAAGTGGACAAAATTCCACTGTTCAATATACCTTGGCTGGTGCTCTCCATTGTCATCTTGTTTGTAGGTTCTTCTCAACACTTGGCTTCATATCTACAAAAGGCAAAGGCGTGAACAAGAGTTGACTGGACCTGAAGTGATCGAGGAGATCATATATGGATTGGAATCTGGCATTCTGTTTGGGATTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTGAAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTGCTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCACTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTA GCTGGTATGATTGCG CTTGATGAACATCTTCCCACA GCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGT TCTTCATTATTA CA GGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTAC CCAGATCTATGCAGAAG TTTTTGAAGAGTAATGTGGAGCGTACCCACAGCA TCAGGAGGCCTAGCTCAGCGCGAGGAAAGGACCCCATCCCAAGCACAACAATCCAT GCATCCACATTGCATCTGCTAACATCTCCATCGAAAGAGAAGGCCTAGA AAAAG TTCCTGCTGGA GCAAGA TTGTTTTGGCACCTCA AATGTGCCA TGTTGTTTAATTGA CTCCTG ATGTG AATGTAAAGTCTAGAGTAGCA TCTTTAAAGTTTGGG TTGGTGA TA TCGTATACTGCTT GTCTGCT CTTATTGATCTATACAGCCTCTTTGGAAAAC                                                                                                                                                                                                                                ]
[+] EMBL AK060040             [                                                                                      CTCTAGAATAAAAGAGAAGGGG AAACCCCCCCCCCAAATCCCACGCCGCTCGGCTCACCGAGTGCTGCATCGGATCGGATCGGGACGGCGGTGGCGGACGCGAGATGTGGGAGTCGGTGGCGCTCACGCTGGCCGGCGCCGCCGGAAACAACGTCGGCAAGGTCCTCCAGAAGAAGGGCACCCACATCCTCCCTCCCCTCTCCTTCAAGCTCAAGGTGATTAGGGCGTACGCGTTGAACAGGCTCTGGATCAGCGGATTCCTCATGGACATGTGCGGCGCCGCGCTCATGCTCACCGCGCTCTCGCAGGCGCCGGTCTCCGTCGTGCAGCCGATCGCCGGCTGTGGCCTCGCCATACTCTGCGTGTTCTCCCATTTCTACCTCAAGGAGTCCATGAACGGGCTCGACTGGGTCGCCATCACATTGGCCGGTCTAGGCACGATAGGAGTTGGTGTTGGAGGCGAGGAGCAGAAAGTGGACAAAATTCCACTGTTCAATATACCTTGGCTGGTGCTCTCCATTGTCATCTTGTTT    GTTCTTCTCAACACTTGGCTTCATATCTACAAAAGGCAAAGGCGTGAACAAGAGTTGACTGGACCTGAAGTGATCGAGGAGATCATATATGGATTGGAATCTGGCATTCTGTTTGGGATTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTGAAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTGCTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCACTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTA GCTGGTATGATTGCG CTTGATGAACATCTTCCCACA GCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGT TCTTCATTATTA CA GGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTACTCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF292414             [                                                                                                      AAGGGGTAACCCCCCCCCCCAAATCCCACGCCGCTCGGCTCACCGAGTGCTGCATCGGATCGGATCGGGACGGCGGTGGCGGACGCGAGATGTGGGAGTCGGTGGCGCTCACGCTGGCCGGCGCCGCCGGAAACAACGTTGGCAAGGTCCTCCAGAAGAAGGGCACCCACATCCTCCCTCCCCTCTCCTTCAAGCTCAAGGTGATTAGGGCGTACGCGTTGAACAGGCTCTGGATCAGCGGATTCCTCATGGACATGTGCGGCGCCGCGCTCATGCTCACCGCGCTCTCGCAGGCGCCGGTCTCCGTCGTGCAGCCGATCGCCGGCTGTGGCCTCGCCATACTCTGCGTGTTCTCCCATTTCTACCTCAAGGAGTCCATGAACGGGCTCGACTGGGTCGCCATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA755075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACCTGAAGTGATCGAGGAGATCATATATGGATTGGAATCTGGCATTCTGTTTGGGATTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTGAAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTGCTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCACTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTA GCTGGTATGATTGCG CTTGATGAACATCTTCCCACA GCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGC TCTTCATTATTA CA GGAGTGATACTTCTTGTTAGTTCAACCCGCATAATTGCTCGGCTAC CCAGATCTATGCAGAAG TTTTTGAAGAGTAATGTGGAGCGTACCCACAGCA TCAGGAGGCCTAGCTCAGCGCGAGGAAAGGACCCCATCCCAAGCACAACAATCCAT GCATCCACATTGCATCTGCTAACATCTCCCTCGAAAGAGAACGCCTAGA AGAAG TTCCTGCTGGA GCCAGA TTGTTTTGGCACCTCA AATGTGCCA TGTTGTTaa                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU225822             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCACTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTA GCTGGTATGATTGCG CTTGATGAACATCTTCCCACA GCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGT TCTTCATTATTA CA GGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTAC CCAGATCTATGCAGAAG TTTTTGAAGAGTAATGTGGAGCGTACCCACAGCA TCAGGAGGCCTAGCTCAGCGCGAGGAAAGGACCCCATCCCAAGCACAACAATCCAT GCATCCACATTGCATCTGCTAACATCTCCATCGAAAGAGAAGGCCTAGA AAAAG TTCCTGCTGGA GCAAGA TTGTTTTGGCACCTCA AATGTGCCA TGTTGTTTAATTGA CTCCTG ATGTG AATGTAAAGTCTAGAGTAGCA TCTTTAAAGTTTGGG TTGGTGA TA TCGTATACTGCTT GTCTGCT CTTATTGATCTATACAGCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCATC TTTAGCggc                                                                                                                                                                                         ]
[+] EMBL BQ906206             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGGCGTTGTANCCTGGTATGATTGCGCCTTGANGAACATCTTCCCACATGCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGTNTCTTCATTATTA CACGGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTAC CCAGATCTATGCAGAAG TTTTTGAAGAGTAATGTGGAGCGTACCCACAGCATTCAGGAGGCCTAGCTCAGCGCGAGGAAAGGACCCCATCCCAAGCACAGCAATCCAT GCATCCACATTGCATCTGCTAACATNTCCATCGAAAGAGAAGGCCTAGACAAAAGATTCCTGCTGGACGCAAGACTTGTTTTGGCACCTCA AATGTGCCA TGTTGTTTAATTGA CTCCTG ATGTG AATGTAAAGTCTAGAGTAGCA TCTTTAAAGTTTGGG TTGGTGA TA TCGTATACTGCTT GTCTGCT CTTATTGATCTATACAGCCTCTTTGGAAAAaaaaaa                                                                                                                                                                                                                           ]
[+] EMBL BI795919             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTCCCAC GGCC C  TTTTCTCTTAC  GGATGGT TC TCA TATGACCA GGAGTGATACTTCTTGTTAGTTCAACCCGGATTA AGCTCGGCTAC CCAGATCTAT CAGAAGTTTTTTGAAGAGTAATGTGGAGCGTACCCACAGCA TCAGGA GCCTAGCTCAGCGCGAGGAAAGGACCCCATCCCAAGCAC ACAATCCATGGCATCCACATTGCATCTGCTAACATCTCCATCGAAAGAGAAGGCCTAGA AAAAG TTCCTGCTGGA GCAAGA TTGTTTTGGCACCTCA AATGTGCCA TGTTGTTTAATTGA CTCCTG ATGTG AATGTAAAGTCTAGAGTAGCA TCTTTAAAGTTTGGG TTGGTGA TA TCGTATACTGCTTGGTCTGCT CTTATTGATCTATACAGCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCATC TTTTCATTCGGTTAGTTGGCCACTGCTAAATCGGTTTGTTCTGTTG                                                                                                                                                    ]
[+] EMBL BQ908336             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          cCCTCACAATGTGCCACTGTTGTTTAATTGACCTCCTGAATGTGAAATGTAAAGTCTAGAGTAGCACTCTTTAAAGTTTGGGTTTGGTGATTATTCGTATACTGCTT GTCTGCTCCTTATTGATCTATACAGCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCATCTTTTCACTTCGGTTAGTTGGCCACTGCTAAATCGGTTTGTTCTGTTGCATGAAAGTTTTTTTTTTTCTTTTGTTTGAGGTACTGACTACTGTTATGCCTTTTCTCGAGCTTGTGTAAGTAAAGGCATTTAACAGCTCTTTGTTATGTTTTTACACCAGAATGACATCTACATAAGCAGTGTTATGTTTTTAAAAA]


>consensus_11940#0 ACGCGAGAAGCGAACGCGACCCGGCCACCACCACACCTCTCCTCCAGCTCGCGGTCTCCT CCTCCTCGGCTCCTCCCAAAAAAGAGCTCTAGAATAAAAGAGAAGGGGAAACCCCCCCCC CAAATCCCACGCCGCTCGGCTCACCGAGTGCTGCATCGGATCGGATCGGGACGGCGGTGG CGGACGCGAGATGTGGGAGTCGGTGGCGCTCACGCTGGCCGGCGCCGCCGGAAACAACGT CGGCAAGGTCCTCCAGAAGAAGGGCACCCACATCCTCCCTCCCCTCTCCTTCAAGCTCAA GGTGATTAGGGCGTACGCGTTGAACAGGCTCTGGATCAGCGGATTCCTCATGGACATGTG CGGCGCCGCGCTCATGCTCACCGCGCTCTCGCAGGCGCCGGTCTCCGTCGTGCAGCCGAT CGCCGGCTGTGGCCTCGCCATACTCTGCGTGTTCTCCCATTTCTACCTCAAGGAGTCCAT GAACGGGCTCGACTGGGTCGCCATCACATTGGCCGGTCTAGGCACGATAGGAGTTGGTGT TGGAGGCGAGGAGCAGAAAGTGGACAAAATTCCACTGTTCAATATACCTTGGCTGGTGCT CTCCATTGTCATCTTGTTTGTAGGTTCTTCTCAACACTTGGCTTCATATCTACAAAAGGC AAAGGCGTGAACAAGAGTTGACTGGACCTGAAGTGATCGAGGAGATCATATATGGATTGG AATCTGGCATTCTGTTTGGGATTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTG AAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTG CTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCA CTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTAGCTGGTATGATTGCGCTTGATG AACATCTTCCCACAGCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGTTCTTCATTA TTACAGGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTACCCAGATCTA TGCAGAAGTTTTTGAAGAGTAATGTGGAGCGTACCCACAGCATCAGGAGGCCTAGCTCAG CGCGAGGAAAGGACCCCATCCCAAGCACAACAATCCATGCATCCACATTGCATCTGCTAA CATCTCCATCGAAAGAGAAGGCCTAGAAAAAGTTCCTGCTGGAGCAAGATTGTTTTGGCA CCTCAAATGTGCCATGTTGTTTAATTGACTCCTGATGTGAATGTAAAGTCTAGAGTAGCA TCTTTAAAGTTTGGGTTGGTGATATCGTATACTGCTTGTCTGCTCTTATTGATCTATACA GCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCATCTTTAGCTTCGGTTAGT TGGCCACTGCTAAATCGGTTTGTTCTGTTGCATGAAAGTTTTTTTTTTTCTTTTGTTTGA GGTACTGACTACTGTTATGCCTTTTCTCGAGCTTGTGTAAGTAAAGGCATTTAACAGCTC TTTGTTATGTTTTTACACCAGAATGACATCTACATAAGCAGTGTTATGTTTTTAAAAA



consensusID : consensus_11940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence
                              [TTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTGAAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTGCTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCACTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTAGCTGGTATGATTGCGCTTGATGAACATCTTCCCACAGCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGTTCTTCATTATTACAGGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTACCCAGATCTATGCAGAAGTTTTTGAAGAGTAATGTGGAGCGTACCCACAGCATCAGGAGGCCTAGCTCAGCGCGAGGAAAGGACCCCATCCCAAGCACAGCAATCCATGCATCCACATTGCATCTGCTAACATCTCCATCGAAAGAGAAGGCCTAGAAAAAGTTCCTGCTGAGCAAGATTGTTTTGGCACCTCAAATGTGCCATGTTGTTTAATTGACTCCTGATGTGAATGTAAAGTCTAGAGTAGCATCTTTAAAGTTTGGGTTGGTGATATCGTATACTGCTTGTCTGCTCTTATTGATCTATACAGCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCAAAAAAAAAAA]

[-] EMBL CA760287             [TTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTGAAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTGCTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCACTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTAGCTGGTATGATTGCGCTTGATGAACATCTTCCCACAGCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGTTCTTCATTATTACAGGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTACCCAGATCTATGCAGAAGTTTTTGAAGAGTAATGTGGAGCGTACCCACAGCATCAGGAGGCCTAGCTCAGCGCGAGGAAAGGACCCCATCCCAAGCACAGCAATCCATGCATCCACATTGCATCTGCTAACATCTCCATCGAAAGAGAAGGCCTAGAAAAAGTTCCTGCTGAGCAAGATTGTTTTGGCACCTCAAATGTGCCATGTTGTTTAATTGACTCCTGATGTGAATGTAAAGTCTAGAGTAGCATCTTTAAAGTTTGGGTTGGTGATATCGTATACTGCTTGTCTGCTCTTATTGATCTATACAGCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCAAAAAAAAAAA]


>consensus_11940#1 TTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTGAAATGGGTTTTCCAAAGATTG TTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTGCTGTGGGATTTGTTTATCAGA CTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCACTTGTACATCAGTTGCATCTA TTGTGTCTGGCGTTGTAGCTGGTATGATTGCGCTTGATGAACATCTTCCCACAGCTCCCA CGGGCCGCTTTTTTCTCTTACTTGGATGGTTCTTCATTATTACAGGAGTGATACTTCTTG TTAGTTCAACCCGGATAATTGCTCGGCTACCCAGATCTATGCAGAAGTTTTTGAAGAGTA ATGTGGAGCGTACCCACAGCATCAGGAGGCCTAGCTCAGCGCGAGGAAAGGACCCCATCC CAAGCACAGCAATCCATGCATCCACATTGCATCTGCTAACATCTCCATCGAAAGAGAAGG CCTAGAAAAAGTTCCTGCTGAGCAAGATTGTTTTGGCACCTCAAATGTGCCATGTTGTTT AATTGACTCCTGATGTGAATGTAAAGTCTAGAGTAGCATCTTTAAAGTTTGGGTTGGTGA TATCGTATACTGCTTGTCTGCTCTTATTGATCTATACAGCCTCTTTGGAAAACTTAACCT TGCATTTTGACCAGGTTTCAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11940#0      ACGCGAGAAGCGAACGCGACCCGGCCACCACCACACCTCTCCTCCAGCTCGCGGTCTCCT 60
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      CCTCCTCGGCTCCTCCCAAAAAAGAGCTCTAGAATAAAAGAGAAGGGGAAACCCCCCCCC 120
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      CAAATCCCACGCCGCTCGGCTCACCGAGTGCTGCATCGGATCGGATCGGGACGGCGGTGG 180
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      CGGACGCGAGATGTGGGAGTCGGTGGCGCTCACGCTGGCCGGCGCCGCCGGAAACAACGT 240
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      CGGCAAGGTCCTCCAGAAGAAGGGCACCCACATCCTCCCTCCCCTCTCCTTCAAGCTCAA 300
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      GGTGATTAGGGCGTACGCGTTGAACAGGCTCTGGATCAGCGGATTCCTCATGGACATGTG 360
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      CGGCGCCGCGCTCATGCTCACCGCGCTCTCGCAGGCGCCGGTCTCCGTCGTGCAGCCGAT 420
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      CGCCGGCTGTGGCCTCGCCATACTCTGCGTGTTCTCCCATTTCTACCTCAAGGAGTCCAT 480
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      GAACGGGCTCGACTGGGTCGCCATCACATTGGCCGGTCTAGGCACGATAGGAGTTGGTGT 540
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      TGGAGGCGAGGAGCAGAAAGTGGACAAAATTCCACTGTTCAATATACCTTGGCTGGTGCT 600
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      CTCCATTGTCATCTTGTTTGTAGGTTCTTCTCAACACTTGGCTTCATATCTACAAAAGGC 660
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      AAAGGCGTGAACAAGAGTTGACTGGACCTGAAGTGATCGAGGAGATCATATATGGATTGG 720
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      AATCTGGCATTCTGTTTGGGATTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTG 780
consensus_11940#1      ---------------------TTTCATCAGTGATATCTAAGACAGGATTCGTGATGTCTG 39
                                            ***************************************

consensus_11940#0      AAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTG 840
consensus_11940#1      AAATGGGTTTTCCAAAGATTGTTGTACCGGCTGCCATTTCTTGTAGTGTGGGCTGCAGTG 99
                       ************************************************************

consensus_11940#0      CTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCA 900
consensus_11940#1      CTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCA 159
                       ************************************************************

consensus_11940#0      CTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTAGCTGGTATGATTGCGCTTGATG 960
consensus_11940#1      CTTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTAGCTGGTATGATTGCGCTTGATG 219
                       ************************************************************

consensus_11940#0      AACATCTTCCCACAGCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGTTCTTCATTA 1020
consensus_11940#1      AACATCTTCCCACAGCTCCCACGGGCCGCTTTTTTCTCTTACTTGGATGGTTCTTCATTA 279
                       ************************************************************

consensus_11940#0      TTACAGGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTACCCAGATCTA 1080
consensus_11940#1      TTACAGGAGTGATACTTCTTGTTAGTTCAACCCGGATAATTGCTCGGCTACCCAGATCTA 339
                       ************************************************************

consensus_11940#0      TGCAGAAGTTTTTGAAGAGTAATGTGGAGCGTACCCACAGCATCAGGAGGCCTAGCTCAG 1140
consensus_11940#1      TGCAGAAGTTTTTGAAGAGTAATGTGGAGCGTACCCACAGCATCAGGAGGCCTAGCTCAG 399
                       ************************************************************

consensus_11940#0      CGCGAGGAAAGGACCCCATCCCAAGCACAACAATCCATGCATCCACATTGCATCTGCTAA 1200
consensus_11940#1      CGCGAGGAAAGGACCCCATCCCAAGCACAGCAATCCATGCATCCACATTGCATCTGCTAA 459
                       ***************************** ******************************

consensus_11940#0      CATCTCCATCGAAAGAGAAGGCCTAGAAAAAGTTCCTGCTGGAGCAAGATTGTTTTGGCA 1260
consensus_11940#1      CATCTCCATCGAAAGAGAAGGCCTAGAAAAAGTTCCTGCTG-AGCAAGATTGTTTTGGCA 518
                       ***************************************** ******************

consensus_11940#0      CCTCAAATGTGCCATGTTGTTTAATTGACTCCTGATGTGAATGTAAAGTCTAGAGTAGCA 1320
consensus_11940#1      CCTCAAATGTGCCATGTTGTTTAATTGACTCCTGATGTGAATGTAAAGTCTAGAGTAGCA 578
                       ************************************************************

consensus_11940#0      TCTTTAAAGTTTGGGTTGGTGATATCGTATACTGCTTGTCTGCTCTTATTGATCTATACA 1380
consensus_11940#1      TCTTTAAAGTTTGGGTTGGTGATATCGTATACTGCTTGTCTGCTCTTATTGATCTATACA 638
                       ************************************************************

consensus_11940#0      GCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCATCTTTAGCTTCGGTTAGT 1440
consensus_11940#1      GCCTCTTTGGAAAACTTAACCTTGCATTTTGACCAGGTTTCAAAAAAAAAAA-------- 690
                       ******************************************     *            

consensus_11940#0      TGGCCACTGCTAAATCGGTTTGTTCTGTTGCATGAAAGTTTTTTTTTTTCTTTTGTTTGA 1500
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      GGTACTGACTACTGTTATGCCTTTTCTCGAGCTTGTGTAAGTAAAGGCATTTAACAGCTC 1560
consensus_11940#1      ------------------------------------------------------------
                                                                                   

consensus_11940#0      TTTGTTATGTTTTTACACCAGAATGACATCTACATAAGCAGTGTTATGTTTTTAAAAA 1618
consensus_11940#1      ----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)