cluster # 11944

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Oryza sativa
cluster # 11944 cluster # 11944 Sequences # 9 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11944#0 length = 1187 sequences # 3
consensus_11944#1 length = 559 sequences # 1

consensus_11944#2 length = 469 sequences # 3
consensus_11944#3 length = 291 sequences # 1
consensus_11944#4 length = 248 sequences # 1

consensusID : consensus_11944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1187
fasta sequence

                              [AGTACCTCCACCAGTACGGCCGCAAGGAGGGTTCCGCCGGATCCGGCGGCGGCGGCAAGTACCAGGATGAGGGCGGCGAGGGCAAATACAAGAAGAAGCCCGGTCATGGAGGTGGGAGGTACGAAGAAGAAGAAGAAGAAGATTACAAGAAGAAGCCTACTAGTGGTGGTGGTGGTGGCTATGGAGGAGGAAGGTATGAGGAAGAAGATAATTACAAGAAGAAGCCTACTAGTGGTGGTGGTGGCTATGGAGGAGGAATGTATGAGGAAGAAGATGATTACAAGAAGAAGCCTAGTAGTGGTGGTGGTGGTGGCTATGGAGGAGGAAGATATGAGGAAGAAGATGAATATAGAAAGAAGCCGAGTGGGGGTGGCTATGGTGGGGGGAGGTATGAGGAAGAAGAAGATGATTACATGAAGAAGCCGAGTGCCGGTGCGGGTGGATATGGAGGTGGTGGAAGGTATGAGGATGAGTACAAGAAGAAGCCTGGTGGTGGTCATGGTGGAGGGAGGTATGAGGAGGATGATGAGTACAACAAGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGTATGAGGAAGAGGAAGGGTACAAGAAGCCTAGTGGCCATGGGGGAGGGAGGTATGGTAAGGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAGTTGGTCATGTTGTCTCTGCATTGTAACACGAATGCTTAGGGTGCTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTGTGTTGCTCATGTTGTGTGTGCCATTCCTGACTATAATTAAGTATTATAATGCTATGCAGATGCAT]

[+] EMBL AK070125             [AGTACCTCCACCAGTACGGCCGCAAGGAGGGTTCCGCCGGATCCGGCGGCGGCGGCAAGTACCAGGATGAGGGCGGCGAGGGCAAATACAAGAAGAAGCCCGGTCATGGAGGTGGGAGGTACGAAGAAGAAGAAGAAGAAGATTACAAGAAGAAGCCTACTAGTGGTGGTGGTGGTGGCTATGGAGGAGGAAGGTATGAGGAAGAAGATAATTACAAGAAGAAGCCTACTAGTGGTGGTGGTGGCTATGGAGGAGGAATGTATGAGGAAGAAGATGATTACAAGAAGAAGCCTAGTAGTGGTGGTGGTGGTGGCTATGGAGGAGGAAGATATGAGGAAGAAGATGAATATAGAAAGAAGCCGAGTGGGGGTGGCTATGGTGGGGGGAGGTATGAGGAAGAAGAAGATGATTACATGAAGAAGCCGAGTGCCGGTGCGGGTGGATATGGAGGTGGTGGAAGGTATGAGGATGAGTACAAGAAGAAGCCTGGTGGTGGTCATGGTGGAGGGAGGTATGAGGAGGATGATGAGTACAACAAGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGTATGAGGAAGAGGAAGGGTACAAGAAGCCTAGTGGCCATGGGGGAGGGAGGTATGGTAAGGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAGTTGGTCATGTTGTCTCTGCATTGTAACACGAATGCTTAGGGTGCTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTGTGTTGCTCATGTTGTGTGTGCCATTCCTGACTATAATTAAGTATTATAATGCTATGCAGATGCAT]
[+] EMBL OSC22061             [                                                                                                                    AGGTACGAAGAAGAAGAAGAAGAAGATTACAAGAAGAAGCCTACTAGTGGTGGTGGTGGTGGCTATGGAGGAGGAAGGTATGAGGAAGAAGATAATTACAAGAAGAAGCCTACTAGTGGTGGTGGTGGCTATGGAGGAGGAATGTATGAGGAAGAAGATGATTACAAGAAGAAGCCTAGTAGTGGTGGTGGTGGTGGCTATNGAGGAGGAAGATATGAGGAAGAAGATGAATATAGAAAGANGCCGAGTNGGGGTGGCTATNGTGGGGGGAGGTATGAGGAAGAAGAAGATGATTACATGAAGAAGCCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU058221             [                                                                                                                                                                                                                                                                                                                                                                                                                                              CGGTNCGGGTGGATATGGAGGNGGTGGAAGGTATGAGGATGAGTACAAGAAGAAGCCTGGTGGTGGTCATGGTGGAGGGAGGTATGAGGAGGATGATGAGTACAACAAGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_11944#0
AGTACCTCCACCAGTACGGCCGCAAGGAGGGTTCCGCCGGATCCGGCGGCGGCGGCAAGT
ACCAGGATGAGGGCGGCGAGGGCAAATACAAGAAGAAGCCCGGTCATGGAGGTGGGAGGT
ACGAAGAAGAAGAAGAAGAAGATTACAAGAAGAAGCCTACTAGTGGTGGTGGTGGTGGCT
ATGGAGGAGGAAGGTATGAGGAAGAAGATAATTACAAGAAGAAGCCTACTAGTGGTGGTG
GTGGCTATGGAGGAGGAATGTATGAGGAAGAAGATGATTACAAGAAGAAGCCTAGTAGTG
GTGGTGGTGGTGGCTATGGAGGAGGAAGATATGAGGAAGAAGATGAATATAGAAAGAAGC
CGAGTGGGGGTGGCTATGGTGGGGGGAGGTATGAGGAAGAAGAAGATGATTACATGAAGA
AGCCGAGTGCCGGTGCGGGTGGATATGGAGGTGGTGGAAGGTATGAGGATGAGTACAAGA
AGAAGCCTGGTGGTGGTCATGGTGGAGGGAGGTATGAGGAGGATGATGAGTACAACAAGA
AGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATG
AAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGTATG
AGGAAGAGGAAGGGTACAAGAAGCCTAGTGGCCATGGGGGAGGGAGGTATGGTAAGGAGG
AAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAG
ACTACCTGAAACTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTG
GCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTG
TAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCC
TGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAAT
AAAACTGTCTTGGTCAGTTGGTCATGTTGTCTCTGCATTGTAACACGAATGCTTAGGGTG
CTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTGTGTTGCTCATGTTGTGTG
TGCCATTCCTGACTATAATTAAGTATTATAATGCTATGCAGATGCAT

consensusID : consensus_11944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [CGAGTACAACAAGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGTATGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGTCTCCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAGTTGGTCATGTTGTCTCTGCATTGTAACACGAATGCTTAGGGTGCTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTGTGTTGCTCAAAAAAAAAAA]

[+] EMBL AU032860             [CGAGTACAACAAGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGTATGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGTCTCCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAGTTGGTCATGTTGTCTCTGCATTGTAACACGAATGCTTAGGGTGCTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTGTGTTGCTCAAAAAAAAAAA]




>consensus_11944#1
CGAGTACAACAAGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCA
TGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGG
CGGTGGCAGGTATGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTC
GGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGTCTCCATGAAGAAGCAAGGCG
GTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCT
TGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGC
TGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATC
TCCATCCGGTTATACAATAAAACTGTCTTGGTCAGTTGGTCATGTTGTCTCTGCATTGTA
ACACGAATGCTTAGGGTGCTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTG
TGTTGCTCAAAAAAAAAAA

consensusID : consensus_11944#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 469
fasta sequence

                              [AGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCA-GGT-ATGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGC-TGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAA-TGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAGTTGGTCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS15463A            [AGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCA GGT ATGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGNCCTTGCTTGTGTTTGGTTAGTTTCCTGTTCTACTTAATTNCCAAATTGGTGTGAAATCATTTACCGTCTCCATCCGGTTATACAATAAAACTGTCTTG                               ]
[+] EMBL AU057222             [                                                                         agggtacAAGAAGCCTAGTG GCCAT  GGGGGAG  GGAGGTATGGTAAGGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGC TGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAA TGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAGTTGGTCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AF522017             [                                                                                                                                                                                                                                                                                                                      ACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGC TGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAA TGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAA      TGGTCAGTTGGTCAAA                 ]




>consensus_11944#2
AGAAGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGT
ATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGT
ATGAGGAAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCA
TGGGAGACTACCTGAAACTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGA
GCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCT
GATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTA
GTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTA
TACAATAAAACTGTCTTGGTCAGTTGGTCAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11944#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [GTCGGAGGGCNGCATGGGAGANTACCTGAAANTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAANTGTCTTNGTCAANAAAANAAANAATA]

[+] EMBL AU091956             [GTCGGAGGGCNGCATGGGAGANTACCTGAAANTGGCACAAGGTCTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAANTGTCTTNGTCAANAAAANAAANAATA]




>consensus_11944#3
GTCGGAGGGCNGCATGGGAGANTACCTGAAANTGGCACAAGGTCTCATGAAGAAGCAAGG
CGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTT
CTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTT
GCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGA
TCTCCATCCGGTTATACAATAAAANTGTCTTNGTCAANAAAANAAANAATA

consensusID : consensus_11944#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [CTCGTGCCGAATTCGGCACGAGGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA756491             [CTCGTGCCGAATTCGGCACGAGGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11944#4
CTCGTGCCGAATTCGGCACGAGGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTT
CTTGAAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTT
GCTGTGTTTGGTTAGTTTCCTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGA
TCTCCATCCGGTTATACAATAAAACTGTCTTGGTCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11944#0      AGTACCTCCACCAGTACGGCCGCAAGGAGGGTTCCGCCGGATCCGGCGGCGGCGGCAAGT 60
consensus_11944#1      ------------------------------------------------------------
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      ACCAGGATGAGGGCGGCGAGGGCAAATACAAGAAGAAGCCCGGTCATGGAGGTGGGAGGT 120
consensus_11944#1      ------------------------------------------------------------
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      ACGAAGAAGAAGAAGAAGAAGATTACAAGAAGAAGCCTACTAGTGGTGGTGGTGGTGGCT 180
consensus_11944#1      ------------------------------------------------------------
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      ATGGAGGAGGAAGGTATGAGGAAGAAGATAATTACAAGAAGAAGCCTACTAGTGGTGGTG 240
consensus_11944#1      ------------------------------------------------------------
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      GTGGCTATGGAGGAGGAATGTATGAGGAAGAAGATGATTACAAGAAGAAGCCTAGTAGTG 300
consensus_11944#1      ------------------------------------------------------------
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      GTGGTGGTGGTGGCTATGGAGGAGGAAGATATGAGGAAGAAGATGAATATAGAAAGAAGC 360
consensus_11944#1      ------------------------------------------------------------
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      CGAGTGGGGGTGGCTATGGTGGGGGGAGGTATGAGGAAGAAGAAGATGATTACATGAAGA 420
consensus_11944#1      ------------------------------------------------------------
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      AGCCGAGTGCCGGTGCGGGTGGATATGGAGGTGGTGGAAGGTATGAGGATGAGTACAAGA 480
consensus_11944#1      ------------------------------------------------------------
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      AGAAGCCTGGTGGTGGTCATGGTGGAGGGAGGTATGAGGAGGATGATGAGTACAACAAGA 540
consensus_11944#1      ----------------------------------------------CGAGTACAACAAGA 14
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ---------------------------------------------------------AGA 3
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      AGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATG 600
consensus_11944#1      AGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATG 74
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      AGCCTAGTGGTGGATATGGGTATGGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATG 63
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      AAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGTATG 660
consensus_11944#1      AAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGTATG 134
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      AAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGGCGGCGGTGGCAGGTATG 123
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      AGGAAGAGGAAGGGTACAAGAAGCCTAGTGGCCATGGGGGAGGGAGGTATGGTAAGGAGG 720
consensus_11944#1      AGGAAGAGGAAG------------------------------------------------ 146
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      AGGAAGAGGAAG------------------------------------------------ 135
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      AAGAGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAG 780
consensus_11944#1      ---------ATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAG 197
consensus_11944#3      ----------------------------------------GTCGGAGGGCNGCATGGGAG 20
consensus_11944#2      ---------ATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAG 186
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      ACTACCTGAAACTGGCACAAGGTCTC-ATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGT 839
consensus_11944#1      ACTACCTGAAACTGGCACAAGGTCTCCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGT 257
consensus_11944#3      ANTACCTGAAANTGGCACAAGGTCTC-ATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGT 79
consensus_11944#2      ACTACCTGAAACTGGCACAAGGTCTC-ATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGT 245
consensus_11944#4      ----------------------------------------CTCGTGCCGAATTCGGCA-C 19
                                                                  ***  *      **   

consensus_11944#0      GGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTT 899
consensus_11944#1      GGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTT 317
consensus_11944#3      GGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTT 139
consensus_11944#2      GGCGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTT 305
consensus_11944#4      GAGGGCGGTATGGGTGACTACTTAAAGCTTGCGGAGGGGTTCTTGAAGAAGCGCTGATTT 79
                       *  *********************************************************

consensus_11944#0      GTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTC 959
consensus_11944#1      GTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTC 377
consensus_11944#3      GTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTC 199
consensus_11944#2      GTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTC 365
consensus_11944#4      GTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTC 139
                       ************************************************************

consensus_11944#0      CTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAA 1019
consensus_11944#1      CTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAA 437
consensus_11944#3      CTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAA 259
consensus_11944#2      CTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAA 425
consensus_11944#4      CTGTTCTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAA 199
                       ************************************************************

consensus_11944#0      TAAAACTGTCTTGGTCAGTTGGTCATGTTGTCTCTGCATTGTAACACGAATGCTTAGGGT 1079
consensus_11944#1      TAAAACTGTCTTGGTCAGTTGGTCATGTTGTCTCTGCATTGTAACACGAATGCTTAGGGT 497
consensus_11944#3      TAAAANTGTCTTNGTCAANAAAANAAANAATA---------------------------- 291
consensus_11944#2      TAAAACTGTCTTGGTCAGTTGGTCAAAAAAAAAAAAAAAAAAAA---------------- 469
consensus_11944#4      TAAAACTGTCTTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 248
                       ***** ****** ****       *                                   

consensus_11944#0      GCTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTGTGTTGCTCATGTTGTGT 1139
consensus_11944#1      GCTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTGTGTTGCTCAAAAAAAAA 557
consensus_11944#3      ------------------------------------------------------------
consensus_11944#2      ------------------------------------------------------------
consensus_11944#4      ------------------------------------------------------------
                                                                                   

consensus_11944#0      GTGCCATTCCTGACTATAATTAAGTATTATAATGCTATGCAGATGCAT 1187
consensus_11944#1      AA---------------------------------------------- 559
consensus_11944#3      ------------------------------------------------
consensus_11944#2      ------------------------------------------------
consensus_11944#4      ------------------------------------------------