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Oryza sativa
cluster # 11948 cluster # 11948       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11948#0 length = 1475 sequences # 4  
consensus_11948#1 length = 487 sequences # 3  
consensus_11948#2 length = 413 sequences # 1  
consensus_11948#3 length = 338 sequences # 1  

consensusID : consensus_11948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1475
fasta sequence
                              [CCAAGAAGGCGCCACTGCACACCGGCGACCATGGACGCCACTGCCACCGACCTCCGCGTCTCCATAGCTCACCAAACCCGCTTCGCGTTCCGCCTCGCCGCCGCGCTCTCCTCCCCGCGGGCGCACCCGGCGGCAGGCGGCGCCGCCGGCGCCGGCGGGAGCAACGTGGCCTTCTCCCCGCTCTCCCTCCACGTCGCGCTCAGCCTCGTCGCGGCCGGCGCGGGCGGCGCCACGCGCGATCAGCTCGTCTCCCTCCTCGGTGTCCCAGGACGAGGGACGGCTGAGGGGCTGCACGCGTTCGCCGAGCAGGTGGTGCAGCTCGTGCTCGCCGACTCGTCTCCCGCCGGCGGCCCTCGCGTCGCCTTCGCCGACGGCGTCTTCATCGACTCGTCGCTGTCGCTCATGAAAAGCTTCAAGGACGTTGCCGTGGGCAAGTACAAGGCTGAGACCCACTCGGTCGACTTCCAAACTAAGGCCGCTGAAGTTGCTAGTCAGGTGAACTCATGGGTAGACAGAGTCACATCAGGCCTCATCAAAGAAATACTCCCTCCAGGATCTGTTGACCATACTACCAGGCTGGTTCTGGGTAATGCCCTTTATTTCAAAGGAGCATGGACTGAGAAGTTTGATGCATCTAAAACCAAAGATGGCGAATTTCGTCTTCTTGATGGCAAGTCGGTTCTAGCACCATTCATGTCCACTTCAAAGAAGCAATATCTTTCGTCTTACGACAGCTTAAAGGTACTGAAGCTCCCATACCAGAAAGGCAGGGACCTGAGGCAGTTCTCCATGTACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGCGAAGCTGAACTCTGAACCAGAGTTCCTGGAGAAGCGTATCCCGACGCGGCAAGTTACTGTCGGCAAGTTCAAGCTCCCCAAG-TTCAAGATATCG-TTTGGATTTGAAGCG-TCTGATTTGCTCAAAATTTT-GGGGCTCCAACTG-CCA-TT-CAG-TTCGAAGGCT-GAT-CTTACT-GGGATGGTGGGTTCT-CCAGAGAGACATAACCTGTT-CG-TTTCA-TCCCTTTTCCAC-AAGTCGTTCGTCCAGG-TGGATG-AGGAA--GG-CACCGAGGCTGCTGCTGCATCTGCAG-CAGTGGT-CAGTTTTAGGTCAGCTCCAGTAACCGTGGACTTCGTTGCGGATCATCCGTTCCTGTTCTTGATCAGGGAGGACATGACAGGTGTGGTGCTGTTCATCGGCCATGTGGTGAATCCACTTCTGTGATCAGGGAAGACAAGAATGGGTGTTGCAATATACTGTAGAGAAGCAGCATTTGATCATGGTGACTTCTCAATGAGTATGACAAATGTTCTGTGTGTGTTTGATTGTGCCTGCATGATGTATGTGAGGTTTGTGTAATGGCTGAGTTAATAAATGAGATGAGACTCGCTGGTCAAATTGTGAGGTTTGTGTAATGGCTGAGTTAATAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK107194             [CCAAGAAGGCGCCACTGCACACCGGCGACCATGGACGCCACTGCCACCGACCTCCGCGTCTCCATAGCTCACCAAACCCGCTTCGCGTTCCGCCTCGCCGCCGCGCTCTCCTCCCCGCGGGCGCACCCGGCGGCAGGCGGCGCCGCCGGCGCCGGCGGGAGCAACGTGGCCTTCTCCCCGCTCTCCCTCCACGTCGCGCTCAGCCTCGTCGCGGCCGGCGCGGGCGGCGCCACGCGCGATCAGCTCGTCTCCCTCCTCGGTGTCCCAGGACGAGGGACGGCTGAGGGGCTGCACGCGTTCGCCGAGCAGGTGGTGCAGCTCGTGCTCGCCGACTCGTCTCCCGCCGGCGGCCCTCGCGTCGCCTTCGCCGACGGCGTCTTCATCGACTCGTCGCTGTCGCTCATGAAAAGCTTCAAGGACGTTGCCGTGGGCAAGTACAAGGCTGAGACCCACTCGGTCGACTTCCAAACTAAGGCCGCTGAAGTTGCTAGTCAGGTGAACTCATGGGTAGACAGAGTCACATCAGGCCTCATCAAAGAAATACTCCCTCCAGGATCTGTTGACCATACTACCAGGCTGGTTCTGGGTAATGCCCTTTATTTCAAAGGAGCATGGACTGAGAAGTTTGATGCATCTAAAACCAAAGATGGCGAATTTCGTCTTCTTGATGGCAAGTCGGTTCTAGCACCATTCATGTCCACTTCAAAGAAGCAATATCTTTCGTCTTACGACAGCTTAAAGGTACTGAAGCTCCCATACCAGAAAGGCAGGGACCTGAGGCAGTTCTCCATGTACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGCGAAGCTGAACTCTGAACCAGAGTTCCTGGAGAAGCGTATCCCGACGCGGCAAGTTACTGTCGGCAAGTTCAAGCTCCCCAAG TTCAAGATATCG TTTGGATTTGAAGCG TCTGATTTGCTCAAAATTTT GGGGCTCCAACTG CCA TT CAG TTCGAAGGCT GAT CTTACT GGGATGGTGGGTTCT CCAGAGAGACATAACCTGTT CG TTTCA TCCCTTTTCCAC AAGTCGTTCGTCCAGG TGGATG AGGAA  GG CACCGAGGCTGCTGCTGCATCTGCAG CAGTGGT CAGTTTTAGGTCAGCTCCAGTAACCGTGGACTTCGTTGCGGATCATCCGTTCCTGTTCTTGATCAGGGAGGACATGACAGGTGTGGTGCTGTTCATCGGCCATGTGGTGAATCCACTTCTGTGATCAGGGAAGACAAGAATGGGTGTTGCAATATACTGTAGAGAAGCAGCATTTGATCATGGTGACTTCTCAATGAGTATGACAAATGTTCTGTGTGTGTTTGATTGTGCCTGCATGATGTATGTGAGGTTTGTGTAATGGCTGAGTTAATAAATGAGATGAGA                                                                  ]
[+] EMBL AU056992             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTCAAAGGAGCATGGACTGAGAAGTTTGATGCATCTAAAACCAAAGATGGCGAATTTCGTCTTCTTGATGGCAAGTCGGTTCTAGCACCATTCATGTCCACTTCAAAGAAGCAATATCTTTCGTCTTACGACAGCTTAAAGGTACTGAAGCTCCCATACCAGAAAGGCAGGGACCTGAGGCAGTTCTCCATGTACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGCGAANTTGAACTCTGAACCAGAGTTCCTGGAGAAGCGTATCCCGACGCGGCAAGTTACTGTCGGCAAGTTCAAGCTCCCCAAGTTTCAAGATATCGTTTTGGATTTGAAGCGTTCTGATTTGCTCAAAATTTTGGGGGCTCCAACTGCCCATTT CAGTTTCGAAGGCTGGAT CTTACTGGGGATGGTGGGTTCTCCCAGAGAGACATAACCTGTT CGTTTTCATTCCCTTTTCCACAAAGTCGTTCGTCCAGGTTGGATGAAGGAAAGGG CANCGA                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CA763195             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTTCTCCATGTACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGGTGGGCTGCGAAGCTGAACTCTGAACCAGAGTTCCTGGAGAAGCGTATCCCGACGCGGCAAGTTACTGTTGGCAAGTTCAAGCTCCCCAAG TTCAAGATATCG TTTGGATTTGAAGCG TTTGATTTGCTCAAAATTTT GGGGCTCCAACTG CCA TT CAG TTCGAAGGCT GAT CTTACT GGGATGGTGGGTTCT CCAGAGAGACATAACCTGTT CG TTTCA TCCCTTTTCCCC AAGTCGTTTGTCCAGG TGGATG AGGAA  GG CCCCGAGGCTGTTGCTGCATTTGCAG CAGTGGT CAGTTCTAGGTCAGCTCCCGTAACCGTGGATTTCGTTGCGGATCATCCGTTCCTGTTCTTGATCAGGGAGGACATGACAGGTGTGGTGCTGTTCATGGGCCATGTGGTGAATCCACTTCTGTGATCAGGGAAGCCAAGAATGGGTGTTGCAATATACTGTAGAGAAGCAGCATTTGATCATGGTGACTTCTCAATGAGTATGACAAATGTTCTGTGTGTGTTTGATTGTGCCTGCCTGATGTATTTGAGGTTTGTGTAATGGCTGAGTTAATAAATGAGATGAGACTCGCTGGTCAAATTGTGAGGTTTGTGTAATGGCTGAGTTAATAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU056993             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 nCAAAATTTT GGGGCTCCAACTG CCA TTCCAG TTCGAAGGCT GATCCTTACT GGGATGGTGGNTTCT CCAGAGAGACATAACCTGTTCCG TTTCA TCCCTTTTCCAC AAGTCGTTCGTCCAGG TGGATG AGGAA  GGNCACCGAGGCTGCTGCTGCATCTGCAGNCAGTGGTCCAGTTTTAGGTCAGCTCCAGTAACCGTGGAATTCGTTGCGGATCATCCGTTCCTGTTCTTGATCAGGGAGGACATGACAGGTGTGGTGCTGTTCATCGGCCATGTGGTGAATCCACTTCTGTGATCAGGGAAGACAAGAATGGGTGTTGCAATATACTGTAGAGAAGCAGCATTTGATCATGGTGACTTCTCAATGAGTATGACAAATGTTCTGTGTGTGTTTGATTGTGCCTGCATGATGTATGTGAGGTTTGTGTAATGGCTGAGTTAATAAATGAGATGAGACTCGCTGGTCAAAaa                                                   ]


>consensus_11948#0 CCAAGAAGGCGCCACTGCACACCGGCGACCATGGACGCCACTGCCACCGACCTCCGCGTC TCCATAGCTCACCAAACCCGCTTCGCGTTCCGCCTCGCCGCCGCGCTCTCCTCCCCGCGG GCGCACCCGGCGGCAGGCGGCGCCGCCGGCGCCGGCGGGAGCAACGTGGCCTTCTCCCCG CTCTCCCTCCACGTCGCGCTCAGCCTCGTCGCGGCCGGCGCGGGCGGCGCCACGCGCGAT CAGCTCGTCTCCCTCCTCGGTGTCCCAGGACGAGGGACGGCTGAGGGGCTGCACGCGTTC GCCGAGCAGGTGGTGCAGCTCGTGCTCGCCGACTCGTCTCCCGCCGGCGGCCCTCGCGTC GCCTTCGCCGACGGCGTCTTCATCGACTCGTCGCTGTCGCTCATGAAAAGCTTCAAGGAC GTTGCCGTGGGCAAGTACAAGGCTGAGACCCACTCGGTCGACTTCCAAACTAAGGCCGCT GAAGTTGCTAGTCAGGTGAACTCATGGGTAGACAGAGTCACATCAGGCCTCATCAAAGAA ATACTCCCTCCAGGATCTGTTGACCATACTACCAGGCTGGTTCTGGGTAATGCCCTTTAT TTCAAAGGAGCATGGACTGAGAAGTTTGATGCATCTAAAACCAAAGATGGCGAATTTCGT CTTCTTGATGGCAAGTCGGTTCTAGCACCATTCATGTCCACTTCAAAGAAGCAATATCTT TCGTCTTACGACAGCTTAAAGGTACTGAAGCTCCCATACCAGAAAGGCAGGGACCTGAGG CAGTTCTCCATGTACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGCG AAGCTGAACTCTGAACCAGAGTTCCTGGAGAAGCGTATCCCGACGCGGCAAGTTACTGTC GGCAAGTTCAAGCTCCCCAAGTTCAAGATATCGTTTGGATTTGAAGCGTCTGATTTGCTC AAAATTTTGGGGCTCCAACTGCCATTCAGTTCGAAGGCTGATCTTACTGGGATGGTGGGT TCTCCAGAGAGACATAACCTGTTCGTTTCATCCCTTTTCCACAAGTCGTTCGTCCAGGTG GATGAGGAAGGCACCGAGGCTGCTGCTGCATCTGCAGCAGTGGTCAGTTTTAGGTCAGCT CCAGTAACCGTGGACTTCGTTGCGGATCATCCGTTCCTGTTCTTGATCAGGGAGGACATG ACAGGTGTGGTGCTGTTCATCGGCCATGTGGTGAATCCACTTCTGTGATCAGGGAAGACA AGAATGGGTGTTGCAATATACTGTAGAGAAGCAGCATTTGATCATGGTGACTTCTCAATG AGTATGACAAATGTTCTGTGTGTGTTTGATTGTGCCTGCATGATGTATGTGAGGTTTGTG TAATGGCTGAGTTAATAAATGAGATGAGACTCGCTGGTCAAATTGTGAGGTTTGTGTAAT GGCTGAGTTAATAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 487
fasta sequence
                              [ACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGAGAAGCTGAACTCTGAACCAGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTCGGGCAATTCAAGCTCCCCAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCTCAAAAGTTTGGGGCTCCACCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATGGTCGATTCACCAGAGGGAAAAAACCTGTTTGTTTCATCCGTTTTCCGCAAGTCGTTGCTTGAGGTGAATGAGGAAGGGACTGAGGCTGCT-CTGCAACTGCAGCAGCGATCACACTTAGGTCAGCTCCAATAGCTGAGGACTTTGTCGCGGATCATCCTTTCCTTTTCCTGATCCGAGAAGACATGACAGGCGTGGTGCTGTTCGTCGGCCATGTGGTCAATCCCCTACTTGCTGCATAGAGCGTTTGCCTGTAAACCGCTGTAGTG]

[-] EMBL OSA309290            [ACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGAGAAGCTGAACTCTGAACCAGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTCGGGCAATTCAAGCTCCCCAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCTCAAAAGTTTGGGGCTCCACCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATGGTCGATTCACCAGAGGGAAAAAACCTGTTTGTTTCATCCGTTTTCCGCAAGTCGTTGCTTGAGGTGAATGAGGAAGGGACTGAGGCTGCT CTGCAACTGCAGCAGCGATCACACTTAGGTCAGCTCCAATAGCTGAGGACTTTGTCGCGGATCATCCTTTCCTTTTCTTGATCCGAGAAGACATGACAGGCGTGGTGCTGTTCGTC                                                            ]
[+] EMBL AU197218             [                                                                AGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTCGGGCAATTCAAGCTCCCGAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCTCAAAAGTTTGGGGCTCCACCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATGGTCGATTCACCAGAGGGAAAAAACCTGTTTGTTTCATCCGTTTTCCACAAGTCGTTCGTTGAGGTGAATGAGGAAGGGACTGAGGCTGCTGCTGCAACTGCAGCAGTGATCACACTTAGGTCAGCTCCAATAGCTGAGGACTTTGTCGCGGATCATCCTTTCCTTTTCCTGATCCAAGAAGACATGACAGGCGTGGTGCTGTTCGTCGGCCATGTGGTCAATCCCCTACTTGCTGCATAGAGCGTTTGCCTGTAAACCGCTGTAGTG]
[+] EMBL BI810106             [                                                                                                                                                                                                                                                                                                                                          TCACACTTAGGTCAGCTCCAATAGCTGAGGACTTTGTCGCGGATCATCCTTTCCTTTTCCTGATCCGAGAAGACATGACAGGCGTGGTGCTGTTCGTCGGCCATGTGGTCAATCCCCTACTTGCTGCATAGAGCGTTTGCCTGTAAACCGC       ]


>consensus_11948#1 ACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGAGAAGCTGAACTCTG AACCAGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTCGGGCAATTCAAGC TCCCCAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCTCAAAAGTTTGGGGC TCCACCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATGGTCGATTCACCAGAGGGAA AAAACCTGTTTGTTTCATCCGTTTTCCGCAAGTCGTTGCTTGAGGTGAATGAGGAAGGGA CTGAGGCTGCTCTGCAACTGCAGCAGCGATCACACTTAGGTCAGCTCCAATAGCTGAGGA CTTTGTCGCGGATCATCCTTTCCTTTTCCTGATCCGAGAAGACATGACAGGCGTGGTGCT GTTCGTCGGCCATGTGGTCAATCCCCTACTTGCTGCATAGAGCGTTTGCCTGTAAACCGC TGTAGTG



consensusID : consensus_11948#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence
                              [CCACGGTGGATGAGGAAGGCACCCGAGGCTGCTGCTGCATCTGCACGCACGTGGTCAGTTCTAGGTCAGCTCCCGTAACCCGTGGACTTCGTTGCGGATCATCCGTTCCTGTTCTTGATCACGGGAGGACACTGACCACGGTGTTGGTGCTGTTCATCGGCCACTGTGGTGAATCCACCTTCTGTGATCCACGGGAAGACCCAGAATGGGTGTTGCAATATACTGTAGAGAACAGCACTTTGATCACTGGTGACTTCTCCATGAGTATGCCCAATGTTCTGTGTGTGTTTGATTGTCCTGCATGATGTATCGTGAGGTTTGTGTAATGCCTGAGTTAATAAATGAGATGAGACTCGCGGTCCAATTGTGAGGTTTGTGTAATGGCTGAGTTAATAAATGAGATGAGACTCGCG]

[-] EMBL BU667014             [CCACGGTGGATGAGGAAGGCACCCGAGGCTGCTGCTGCATCTGCACGCACGTGGTCAGTTCTAGGTCAGCTCCCGTAACCCGTGGACTTCGTTGCGGATCATCCGTTCCTGTTCTTGATCACGGGAGGACACTGACCACGGTGTTGGTGCTGTTCATCGGCCACTGTGGTGAATCCACCTTCTGTGATCCACGGGAAGACCCAGAATGGGTGTTGCAATATACTGTAGAGAACAGCACTTTGATCACTGGTGACTTCTCCATGAGTATGCCCAATGTTCTGTGTGTGTTTGATTGTCCTGCATGATGTATCGTGAGGTTTGTGTAATGCCTGAGTTAATAAATGAGATGAGACTCGCGGTCCAATTGTGAGGTTTGTGTAATGGCTGAGTTAATAAATGAGATGAGACTCGCG]


>consensus_11948#2 CCACGGTGGATGAGGAAGGCACCCGAGGCTGCTGCTGCATCTGCACGCACGTGGTCAGTT CTAGGTCAGCTCCCGTAACCCGTGGACTTCGTTGCGGATCATCCGTTCCTGTTCTTGATC ACGGGAGGACACTGACCACGGTGTTGGTGCTGTTCATCGGCCACTGTGGTGAATCCACCT TCTGTGATCCACGGGAAGACCCAGAATGGGTGTTGCAATATACTGTAGAGAACAGCACTT TGATCACTGGTGACTTCTCCATGAGTATGCCCAATGTTCTGTGTGTGTTTGATTGTCCTG CATGATGTATCGTGAGGTTTGTGTAATGCCTGAGTTAATAAATGAGATGAGACTCGCGGT CCAATTGTGAGGTTTGTGTAATGGCTGAGTTAATAAATGAGATGAGACTCGCG



consensusID : consensus_11948#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence
                              [AGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTCGGGCAATTCAAGCTCCCGAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCTCAAAAGTTTGGGGCTCCACCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATGGTCGATTCACCAGAGGGAAAAAACCTGTTTGTTNAATCCGTTTCCACAAGTCGTTCGTTNAGGTGGATTAGGGANGGGCNTAGGNGCTGCTGNTGCAACTGCAGAGTGGANCACACTTAGGNCAGCTCCANTAGTTNGGGCCTTNNCCGGGGTCCATCCTTTCNTTTTCNTGGTNCCAAGG]

[+] EMBL OS2394A              [AGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTCGGGCAATTCAAGCTCCCGAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCTCAAAAGTTTGGGGCTCCACCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATGGTCGATTCACCAGAGGGAAAAAACCTGTTTGTTNAATCCGTTTCCACAAGTCGTTCGTTNAGGTGGATTAGGGANGGGCNTAGGNGCTGCTGNTGCAACTGCAGAGTGGANCACACTTAGGNCAGCTCCANTAGTTNGGGCCTTNNCCGGGGTCCATCCTTTCNTTTTCNTGGTNCCAAGG]


>consensus_11948#3 AGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTCGGGCAATTCAAGCTCCC GAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCTCAAAAGTTTGGGGCTCCA CCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATGGTCGATTCACCAGAGGGAAAAAA CCTGTTTGTTNAATCCGTTTCCACAAGTCGTTCGTTNAGGTGGATTAGGGANGGGCNTAG GNGCTGCTGNTGCAACTGCAGAGTGGANCACACTTAGGNCAGCTCCANTAGTTNGGGCCT TNNCCGGGGTCCATCCTTTCNTTTTCNTGGTNCCAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      CCAAGAAGGCGCCACTGCACACCGGCGACCATGGACGCCACTGCCACCGACCTCCGCGTC 60
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      TCCATAGCTCACCAAACCCGCTTCGCGTTCCGCCTCGCCGCCGCGCTCTCCTCCCCGCGG 120
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      GCGCACCCGGCGGCAGGCGGCGCCGCCGGCGCCGGCGGGAGCAACGTGGCCTTCTCCCCG 180
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      CTCTCCCTCCACGTCGCGCTCAGCCTCGTCGCGGCCGGCGCGGGCGGCGCCACGCGCGAT 240
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      CAGCTCGTCTCCCTCCTCGGTGTCCCAGGACGAGGGACGGCTGAGGGGCTGCACGCGTTC 300
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      GCCGAGCAGGTGGTGCAGCTCGTGCTCGCCGACTCGTCTCCCGCCGGCGGCCCTCGCGTC 360
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      GCCTTCGCCGACGGCGTCTTCATCGACTCGTCGCTGTCGCTCATGAAAAGCTTCAAGGAC 420
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      GTTGCCGTGGGCAAGTACAAGGCTGAGACCCACTCGGTCGACTTCCAAACTAAGGCCGCT 480
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      GAAGTTGCTAGTCAGGTGAACTCATGGGTAGACAGAGTCACATCAGGCCTCATCAAAGAA 540
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      ATACTCCCTCCAGGATCTGTTGACCATACTACCAGGCTGGTTCTGGGTAATGCCCTTTAT 600
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      TTCAAAGGAGCATGGACTGAGAAGTTTGATGCATCTAAAACCAAAGATGGCGAATTTCGT 660
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      CTTCTTGATGGCAAGTCGGTTCTAGCACCATTCATGTCCACTTCAAAGAAGCAATATCTT 720
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      TCGTCTTACGACAGCTTAAAGGTACTGAAGCTCCCATACCAGAAAGGCAGGGACCTGAGG 780
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      -------------ACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGAG 47
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      CAGTTCTCCATGTACATACTTCTTCCGGAAGCACAGGATGGCCTCTGGAGCTTGGCTGCG 840
consensus_11948#2      -----------------------CCACGGTGGATGAGGAAGGCACCCGAGGCTGCTGCTG 37
                                                                                   

consensus_11948#1      AAGCTGAACTCTGAACCAGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTC 107
consensus_11948#3      -----------------AGAGTTCCTGGAGAAGCATATCCCAACGCGGCAAGTTACTGTC 43
consensus_11948#0      AAGCTGAACTCTGAACCAGAGTTCCTGGAGAAGCGTATCCCGACGCGGCAAGTTACTGTC 900
consensus_11948#2      CATCTGCACGCACGTGGTCAGTTC-TAGGTCAGC-TCCCGTAACCCGTGGACTTCGTTGC 95
                                          ***** * *   *** *  *   ** **   * **  *  *

consensus_11948#1      GGGCAATTCAAGCTC-CCCAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCT 166
consensus_11948#3      GGGCAATTCAAGCTC-CCGAAGTTCAAGATATCGTTTGGATTTGAGGCGTCTGATTTGCT 102
consensus_11948#0      GGCAAGTTCAAGCTC-CCCAAGTTCAAGATATCGTTTGGATTTGAAGCGTCTGATTTGCT 959
consensus_11948#2      GGATCATCCGTTCCTGTTCTTGATCACGGGAGGACACTGACC-ACGGTGTTGGTGCTGTT 154
                       **    * *   *        * *** *  *       **      * **  *   ** *

consensus_11948#1      CAAAAGT-----TTGGGGCTCCACCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATG 221
consensus_11948#3      CAAAAGT-----TTGGGGCTCCACCTGCCATTTAGCTCTGAAGCTGATCTTACAGAGATG 157
consensus_11948#0      CAAAATT-----TTGGGGCTCCAACTGCCATTCAGTTCGAAGGCTGATCTTACTGGGATG 1014
consensus_11948#2      CATCGGCCACTGTGGTGAATCCACCTTCTGT--GATCCACGGGAAGACCCAGAATGGGTG 212
                       **          * * *  **** ** *  *      *    *  ** *       * **

consensus_11948#1      GT-CGATTCACCAGAGGGAA-AAAACCTGTTTGTTTCATCCGTTTTCCGCAAGTCGTTGC 279
consensus_11948#3      GT-CGATTCACCAGAGGGAA-AAAACCTGTTTGTTNAATCCGTTT-CCACAAGTCGTTCG 214
consensus_11948#0      GT-GGGTTCTCCAGAGAGAC-ATAACCTGTTCGTTTCATCCCTTTTCCACAAGTCGTTCG 1072
consensus_11948#2      TTGCAATATACTGTAGAGAACAGCACTTTGATCACTGGTGACTTCTCCATGAGT-ATGCC 271
                        *    *   *   ** **  *  ** *          *   **  **   ***  *   

consensus_11948#1      TTGAGGTGAATGAGGAAGGGACT--GAGGCTGC-T-CTGCAAC-TGCAGCAGCGATCACA 334
consensus_11948#3      TTNAGGTGGATTAGGGANGGGCNTAGGNGCTGC-TGNTGCAAC-TGCAGAGTGGANCACA 272
consensus_11948#0      TCCAGGTGGATGAGGAAGGCACC--GAGGCTGC-TGCTGCATC-TGCAGCAGTGGTCAGT 1128
consensus_11948#2      CAATGTTCTGTGTGTGTTTGATT---GTCCTGCATGATGTATCGTGAGGTTTGTGTAATG 328
                           * *   *  *               **** *  ** * * **  *        *  

consensus_11948#1      CTTAGGTCAGCTCCAATAGCTGAGGACTTTGTCGCGGATCA-TCCTTTCCTTTTCCTGAT 393
consensus_11948#3      CTTAGGNCAGCTCCANTAGTTNGGGCCTTNNCCGGGGTCCA-TCCTTTCNTTTTCNTGGT 331
consensus_11948#0      TTTAGGTCAGCTCCAGTAACCGTGGACTTCGTTGCGGATCA-TCCGTTCCTGTTCTTGAT 1187
consensus_11948#2      CCTGAGTTA------ATAAATGAGATGAGACTCGCGGTCCAATTGTGAGGTTTGTGTAAT 382
                         *  *  *       **     *         * **  ** *       * *   *  *

consensus_11948#1      CCGAGAAGACATGACAGGCGTGGTGCTGTTCGTCGGCCATGTGGTCAATCCCCTACTTGC 453
consensus_11948#3      NCCAAGG----------------------------------------------------- 338
consensus_11948#0      CAGGGAGGACATGACAGGTGTGGTGCTGTTCATCGGCCATGTGGTGAATCCACTTCTGTG 1247
consensus_11948#2      GGCTGAGTTAATAAATGAGATGAGACTCGCG----------------------------- 413
                                                                                   

consensus_11948#1      TGCATAGAGCGTTTGCCTGTAAACCGCTGTAGTG-------------------------- 487
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      ATCAGGGAAGACAAGAATGGGTGTTGCAATATACTGTAGAGAAGCAGCATTTGATCATGG 1307
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      TGACTTCTCAATGAGTATGACAAATGTTCTGTGTGTGTTTGATTGTGCCTGCATGATGTA 1367
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------------------
consensus_11948#3      ------------------------------------------------------------
consensus_11948#0      TGTGAGGTTTGTGTAATGGCTGAGTTAATAAATGAGATGAGACTCGCTGGTCAAATTGTG 1427
consensus_11948#2      ------------------------------------------------------------
                                                                                   

consensus_11948#1      ------------------------------------------------
consensus_11948#3      ------------------------------------------------
consensus_11948#0      AGGTTTGTGTAATGGCTGAGTTAATAAAAAAAAAAAAAAAAAAAAAAA 1475
consensus_11948#2      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)