cluster # 11951

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Oryza sativa
cluster # 11951 cluster # 11951 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11951#0 length = 389 sequences # 4
consensus_11951#1 length = 352 sequences # 2

consensus_11951#2 length = 327 sequences # 2
consensus_11951#3 length = 131 sequences # 1

consensusID : consensus_11951#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 389
fasta sequence

                              [GGGCGGACGCGTGGGTTCTGGATTCCTCTCTACCCCCA-ACAATGGCCTGACACCG-CTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCA-CTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC-ATAGTAATAATCAGAA-CTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAACTAGTATTTGTCATGGCAAAAAAAAAAAAA]

[+] EMBL BI796462             [GGGCGGACGCGTGGGTTCTGGATTCCTCTCTACCCCCAGACAATGGCCTGACACCG CTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACCTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC ATAGTAATAATCAGAA CTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAACTAGTATTTGTCATGGCAAAAAAAA     ]
[+] EMBL AA750667             [                TCTGGATTCCTCTCTACCCCCA ACAATGGCCTGACACCGACTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAAC GCCGATGCAGCGAAGGTATCCA CTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAAC AC TTGGCAGGTCTTCCTTCTCCAT TCGAC AG AGATGGT ATGGAGTGTCTAT                                                                                                                                                 ]
[+] EMBL BI796836             [                           CTCTACCCCCA ACAATGGCCTGACACCG CTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCA CTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC ATAGTAATAATCAGAACCTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAACTAGTATTTGTCATGGCAAAAA        ]
[+] EMBL BI796218             [                                                     CCG CTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCA CTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAA CTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAACTAGTATTTGTCATGGCATCAAAAAAAAAA]




>consensus_11951#0
GGGCGGACGCGTGGGTTCTGGATTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCC
CTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGAC
GATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGG
CAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGT
GTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC
ATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGAAC
TAGTATTTGTCATGGCAAAAAAAAAAAAA

consensusID : consensus_11951#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence

                              [GCCTGACACCGCTGCCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTC-TTCCTTCTCCATCTCCACAAG-AAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGACACTAGTATTTGTCATGGCATCTTTTCT--AAAAAAAA]

[+] EMBL BI798003             [GCCTGACACCGCTGCCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTC TTCCTTCTCCATCTCCACAAG AAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGACACTAGTATTTGTCATGGCATCTTTTCT  AAAAAAA ]
[+] EMBL BI798237             [                       GCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCATTCCTTCTCCATCTCGACAAGCAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTATTAC ATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGTGA ACTAGTATTTGTCATGGCATCTTTTCTTGAAAAAAAA]




>consensus_11951#1
GCCTGACACCGCTGCCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCG
CCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGG
TGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCCACAA
GAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGT
ATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACT
GTATCTTTTGTGGTGACACTAGTATTTGTCATGGCATCTTTTCTAAAAAAAA

consensusID : consensus_11951#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 327
fasta sequence

                              [TTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGATGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCATCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAAAAAAAAAAAAAA]

[+] EMBL AU162218             [TTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGATGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCATCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAAAAAAAAAAAAAA]
[+] EMBL OSC881               [ TCCTCTCTACCCCCAACAATGGCCTGANACCANTGCCCTGCATGCAACCCATGCAGTGTTCTNACTACTTCTAANCTTCGCCGGTGGTGTTGAAGATNATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGTTGCTAGGCCATGTNGGGCAACTAANCAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGNGTNTCTATATCCCCGGAGCTCTCTTGATAGATTTNATCATC                                                                      ]




>consensus_11951#2
TTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCCCTGCATGCAACCCATGCAGTGT
TCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGATGATGCCTCAACGGCCGATGCAG
CGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGT
CTTCCTTCTCCATCTCGACAAGAAGATGGTAATGGAGTGTCTATATCCCCGGAGCTCTCT
TGATAGAATTCATCATCATGTATCAGTTGTTCTATTACAATAGTAATAATCAGAACTAGT
GCTCTTGTTGTGGAAAAAAAAAAAAAA

consensusID : consensus_11951#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 131
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTAGTTCTGATTATTACTATTGGAATAGAACAACTGATACCTGATGACCAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATTACCATCCCCTTGTCTCGGCCTCT]

[+] EMBL CA761698             [TTTTTTTTTTTTTTTTTTTTTAGTTCTGATTATTACTATTGGAATAGAACAACTGATACCTGATGACCAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATTACCATCCCCTTGTCTCGGCCTCT]




>consensus_11951#3
TTTTTTTTTTTTTTTTTTTTTAGTTCTGATTATTACTATTGGAATAGAACAACTGATACC
TGATGACCAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATTACCATCCCCTTG
TCTCGGCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11951#0      GGGCGGACGCGTGGGTTCTGGATTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCC 60
consensus_11951#2      ----------------------TTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCC 38
consensus_11951#1      --------------------------------------------GCCTGACACCGCTGCC 16
consensus_11951#3      ------------------------------------------------------------
                                                                                   

consensus_11951#0      C-TGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGA 119
consensus_11951#2      C-TGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGA 97
consensus_11951#1      CCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGA 76
consensus_11951#3      ---------TTTTTTTTTTTTTTTTTTTTTAGTTCTGATTATTACTATTGGAATAGAACA 51
                                      *    * ** *   ** **** *   *  *   ***  * *** *

consensus_11951#0      --CGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTA 177
consensus_11951#2      --TGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTA 155
consensus_11951#1      --CGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTA 134
consensus_11951#3      ACTGATACCT-GATGACCAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATT-- 108
                          *** ***  * * ** ** *    ***  * *  *  **     *  *  ****   

consensus_11951#0      GGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGG 237
consensus_11951#2      GGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGTAATGG 215
consensus_11951#1      GGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCCACAAGAAGATGGTAATGG 194
consensus_11951#3      -----ACCATCC--CCTTGTCTCGGCCTCT------------------------------ 131
                            ** *  *  * *** *  * * **                               

consensus_11951#0      AGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTAT 297
consensus_11951#2      AGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCATCATCATGTATCAGTTGTTCTAT 275
consensus_11951#1      AGTGTCTATATCCCCGGAGCTCTCTTGATAGAATTCGTCATCATGTATCAGTTGTTCTAT 254
consensus_11951#3      ------------------------------------------------------------
                                                                                   

consensus_11951#0      TACA-TAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGT 356
consensus_11951#2      TACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAAAAAAAAAAAAAA-------- 327
consensus_11951#1      TACAATAGTAATAATCAGAACTAGTGCTCTTGTTGTGGAGACTACTGTATCTTTTGTGGT 314
consensus_11951#3      ------------------------------------------------------------
                                                                                   

consensus_11951#0      GA-ACTAGTATTTGTCATGGCAAAAAAAAAAAAA---- 389
consensus_11951#2      --------------------------------------
consensus_11951#1      GACACTAGTATTTGTCATGGCATCTTTTCTAAAAAAAA 352
consensus_11951#3      --------------------------------------