cluster # 11952

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Oryza sativa
cluster # 11952 cluster # 11952 Sequences # 8 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11952#0 length = 400 sequences # 8

consensusID : consensus_11952#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 400
fasta sequence

                              [TTTTTTCTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGAGGACGAGCGGGGCGCCGGCCCTCCG-GTGGCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAA-GGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGA-GGGAGAT-CGGCAATAGCCGGTGGTGGCTGCCATGGTAGAAGAGAGAGAGAGCTTG]

[+] EMBL CF314563             [TTTTTTCTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGAGGACGAGCGGGGCGCCGGCCCTCCG GTGGCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAA GGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGA GGGAGAT CGGCAATAGCCGGTGGTGGCTGCCATGGTAGAAGAGAGAGAGAGCTT ]
[-] EMBL CF314564             [ TTTTTCTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGAGGACGAGCGGGGCGCCGGCCCTCCG GTGGCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAA GGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGA GGGAGAT CGGCAATAGCCGGTGGTGGCTGCCATGGTAGAAGAGAGAGAGAGCTTG]
[+] EMBL CF314007             [  TTTTTTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGAGGACGAGCGGGGCGCCGGCCCTCCG GTGGCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAA GGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGA GGGAGAT CGGCAATAGCCGGTGGTGGCTGCCATGGTAGAAGAGAGAGAGAGC   ]
[+] EMBL CF337516             [   TTTTTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGGGGACGAGCGGGGCGCCGGCCCTCCG GTGGCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAAGGGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGAGGGGAGATNCGGCAATAGCCGGTGGTGGCTGCCATGGTAAAAGAGAGAGAGAGCTT ]
[+] EMBL CF322005             [   TTTCTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGAGGACGAGCGGGGCGCCGGCCCTCCG GTGGCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAA GGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGA GGGAGAT CGGCAATAGCCGGTGGTGGCTGCCATGGTAGAAGAGAGAGAGAGCT  ]
[-] EMBL CF314006             [   TTTTTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGAGGACGAGCGGGGCGCCGGCCCTCCGNGT GCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAA GGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGA GGGAGAT CGGCAATAGCCGGTGGTGGCTGCCA GGTAGAAGAGAGAGAGAGCT  ]
[-] EMBL CF322004             [    TTCTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGAGGACGAGCGGGGCGCCGGCCCTCCG GTGGCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAA GGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGA GGGAGAT CGGCAATAGCCGGTGGTGGCTGCCATGGTAGAAGAGAGAGAGAGCTT ]
[-] EMBL CF318055             [    TTTTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGGGAGAAGAGGGGACGAGCGGGGCGCCGGCCCTCCG GTGGCCGAAACGCGGCGACGTCGGCAACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGAGATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTATAGTGGCTTATAGGACGGCTAA GGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAAGGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGA GGGAGAT CGGCAATAGCCGGTGGTGGCTGCCATGGTAGAAGAG            ]




>consensus_11952#0
TTTTTTCTTCTCCTTCCTCCCGTCTTCTTTCTTCTCCTCTTCCGTTGGCAGCGAGAGAGG
GAGAAGAGAGGACGAGCGGGGCGCCGGCCCTCCGGTGGCCGAAACGCGGCGACGTCGGCA
ACATAACATGTTCCCCGTCGACGCGCATCCGGGGACGGCAGAGGTCGGCAGTGGAAGTGA
GATATGAAGCCGGAACGGCGGCGGCAAAAGCTTGCTCCGGCCGGTAAAAGAAGTGGCTAT
AGTGGCTTATAGGACGGCTAAGGGAGAGGGGAAACTAGAAAAATGGGTTCACCTCATCAA
GGCAAGCCCGGTGGCGCGAGGGTTTGTCCGGCAATGCTCCGGTGAGGGAGATCGGCAATA
GCCGGTGGTGGCTGCCATGGTAGAAGAGAGAGAGAGCTTG

clustalw multiple alignements is not computed in this case