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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1301 fasta sequence
[GAGGTGGGAAGCCAAAGTGGGAGAAGCAAAAATATTCTCAGGGCAGGTAAGGTAAGCGAAGGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGGGGATGAGCGCGGCGGCGGAGGAGGCGGCTGCGGCGGCGGCGGCGGAGGAGGTGGAGGGGGTGGAGGCGGGGAAGAAGGGCGTGGCGGATGCGAAGGGGAAGGGGAAGGAGAAGGTGGTGGTGGCGGAGGAGGATTCTGCGGTGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC-TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGG-TATCAAGAAACT---GATTCCAGAAG-CATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGTA]
[+] EMBL AK065847 [GAGGTGGGAAGCCAAAGTGGGAGAAGCAAAAATATTCTCAGGGCAGGTAAGGTAAGCGAAGGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGGGGATGAGCGCGGCGGCGGAGGAGGCGGCTGCGGCGGCGGCGGCGGAGGAGGTGGAGGGGGTGGAGGCGGGGAAGAAGGGCGTGGCGGATGCGAAGGGGAAGGGGAAGGAGAAGGTGGTGGTGGCGGAGGAGGATTCTGCGGTGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGG TATCAAGAAACT GATTCCAGAAG CATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGT ]
[+] EMBL CB634137 [ TCTGCGGCGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAATCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGG TATCAAGAAACT GATTCCAGAAG CATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTA ]
[+] EMBL AU056458 [ TCTGCGGTGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGGTTATCAAGAAACTGCAGATTCCAGAAGCCATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCC ]
[+] EMBL C72739 [ GCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGANGCTATACTTGTTTGAGGCACAANGCTGG TATCAAG AACT GANTCCAGAAG CATTTCCTGTATAGAAATGAAAGCTGAA GNCCAGCTTCCCGGAAAAG ]
[+] EMBL C72738 [ CGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTTGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGANGCACAAAGCTGG TATCAAGAACCT GCTTCCAGAAG CATTTCCTGTATAGAAATGAAANCTGAAGG CAACCTTCCCGG ]
[+] EMBL CB630860 [ ATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGT ]
[-] EMBL CB683446 [ ACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTTCAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGTA]
[-] EMBL CB634138 [ ATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGTA]
consensusID : consensus_11956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[ATTCTCCCGGCAGGTAAGGTAAGCGAAGGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGGTATCAAGAAACTGATTCCAGAAGCATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTACGCCCTGAAGAGTAA]
[+] EMBL CB660189 [ATTCTCCCGGCAGGTAAGGTAAGCGAAGGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGGTATCAAGAAACTGATTCCAGAAGCATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTACGCCCTGAAGAGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11956#0 GAGGTGGGAAGCCAAAGTGGGAGAAGCAAAAATATTCTCAGGGCAGGTAAGGTAAGCGAA 60
consensus_11956#1 ------------------------------------------------------------
consensus_11956#0 GGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGGGGATGAGCGCGGCGGCGGA 120
consensus_11956#1 ------------------------------------------------------------
consensus_11956#0 GGAGGCGGCTGCGGCGGCGGCGGCGGAGGAGGTGGAGGGGGTGGAGGCGGGGAAGAAGGG 180
consensus_11956#1 ------------------------------------------------------------
consensus_11956#0 CGTGGCGGATGCGAAGGGGAAGGGGAAGGAGAAGGTGGTGGTGGCGGAGGAGGATTCTGC 240
consensus_11956#1 ------------------------------------------------------------
consensus_11956#0 GGTGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGC 300
consensus_11956#1 ------------------------------------------------------------
consensus_11956#0 GCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGA 360
consensus_11956#1 ----------------------------ATTCTCCCGGCAGGTAAGGTAAGCGAAGGCGA 32
* **** * ** * ***
consensus_11956#0 GGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCT 420
consensus_11956#1 GAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGTGCCAATTATTGGTGGAAAAGACCT 92
* * * * *** * * * * ** * ***************************
consensus_11956#0 TGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTC 480
consensus_11956#1 TGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTC 152
************************************************************
consensus_11956#0 CGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTGCGACAAATGC 540
consensus_11956#1 CGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTGCGACAAATGC 212
************************************************************
consensus_11956#0 TTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTT 600
consensus_11956#1 TTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTT 272
************************************************************
consensus_11956#0 GTTTGAGGCACAAGGCTGGTATCAAGAAACTGATTCCAGAAGCATTTCCTGTATAGAAAT 660
consensus_11956#1 GTTTGAGGCACAAGGCTGGTATCAAGAAACTGATTCCAGAAGCATTTCCTGTATAGAAAT 332
************************************************************
consensus_11956#0 GAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGA 720
consensus_11956#1 GAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGA 392
************************************************************
consensus_11956#0 CCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGG 780
consensus_11956#1 CCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGG 452
************************************************************
consensus_11956#0 CTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCAC 840
consensus_11956#1 CTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCAC 512
************************************************************
consensus_11956#0 CGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCAT 900
consensus_11956#1 CGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCAT 572
************************************************************
consensus_11956#0 ACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAA 960
consensus_11956#1 ACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAA 632
************************************************************
consensus_11956#0 ACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGA 1020
consensus_11956#1 ACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGA 692
************************************************************
consensus_11956#0 ATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGG 1080
consensus_11956#1 ATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTACG 752
********************************************************** *
consensus_11956#0 CCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAG 1140
consensus_11956#1 CCCTGAAGAGTAA----------------------------------------------- 765
********* **
consensus_11956#0 ACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTAT 1200
consensus_11956#1 ------------------------------------------------------------
consensus_11956#0 CCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGA 1260
consensus_11956#1 ------------------------------------------------------------
consensus_11956#0 AGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGTA 1301
consensus_11956#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||