These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 758 fasta sequence [AAAATGTCATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTC-TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG-CCGGATTCTCGGCCTCCTCTCCACGAC-GGATTCTCCCGGCACCTCGCGCGAGCGGC-G-GCGGCGGCGG-CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG-AATCCGAATGGCTGAGGG-AAACAC-TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTAATGGTTCTTAAACTTAAAAAAA] [+] EMBL AK071079 [AAAATGTCATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAGCGGC G GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTAATGGT ] [+] EMBL AU065938 [ CATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAG GCC G GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACAACGCTGCG GGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGA ] [+] EMBL CA754082 [ TCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAGCGGC G GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAA CATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTT ] [+] EMBL C26899 [ TTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCCTCGTCCCACCTCAAGGGCGTAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGNCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGA GGC GNGCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTA ] [-] EMBL CB685778 [ TCACGCTCATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAGCGGC G GCGGCGGCGG CGGGGAGGAGGAGGACACCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTTTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTA ] [+] EMBL CB685777 [ ATGGCCGCGCCTC TCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGAGCGGC G GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTAATG ] [+] EMBL AA750590 [ CACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCG CCGGATTCTCGGCCTCCTCTCCACGAC GGATTCTCCCGGCACCTCGCGCGA CGGCTG GCGGCGGCGG CGGGGAGGAGGAGGACAGCCGAGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGATTACCCCTGGAGGAGCAGCGAAGGAAATCCGAATGGCTGAGGGTAAACACTTTCACAAGT ] [+] EMBL AU089686 [ CCCGGCTCAACCTCGCCCGGATTCTCGGCTTCCTCTCCACGACGGGATTCTCCCGGCACCTCGCGCGAGCGCC G NCGGCGGCGGCCGGGGAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCAGGAGCAGCGCAGG AATCCGAATGGCTGAGGG AAACAC TGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGC ANACCACTGCGCGGTCATTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATTTTGAGTAAAATACGCTAATGGTTCTTAAACTTAAAAAAA] consensusID : consensus_11963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [CAGGCTTCTTTGTTCATGGGTGCCTGGGCGGGTGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCTAAAGATACACTGATCCAAAAATTTGCCTCTTGTTTGCAAC] [+] EMBL CA765386 [CAGGCTTCTTTGTTCATGGGTGCCTGGGCGGGTGCTTGGTTGAGAAAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCTAAAGATACACTGATCCAAAAATTTGCCTCTTGTTTGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11963#0 AAAATGTCATCTTCCACCTCCGTCCTTTCCCCTCTCCTCGCTCACGCTCATGGCCGCGCC 60 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 TCTCCCACCTCAAGGGCGCAACCTCTCATCGCTTCCCGGCTCAACCTCGCCGGATTCTCG 120 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 GCCTCCTCTCCACGACGGATTCTCCCGGCACCTCGCGCGAGCGGCGGCGGCGGCGGCGGG 180 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 GAGGAGGAGGACAGCCGCGTGCAGGAGCTGAGGGTGCCCGGTTCTTGGCTCACCCCTGCA 240 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 GGAGCAGCGCAGGAATCCGAATGGCTGAGGGAAACACTGCACAAGTGGCTCGACGACGAG 300 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 TACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCATTCTACGAG 360 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 TCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTG 420 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 CAGAAGCTGTCATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTG 480 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 AGTTTGATATCGCAGAGGATGGAGTCATCATCTGATGACTGATCATTGCCAAGCAATTGC 540 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 TAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGATCTTTGTCTA 600 consensus_11963#1 ------------------------------------------------------------ consensus_11963#0 CTGAATTGAGTTCATCAGGTTTCTTTGT------GTGCCTGGGCGGGCGCTTGGTTGAGA 654 consensus_11963#1 ---------------CAGGCTTCTTTGTTCATGGGTGCCTGGGCGGGTGCTTGGTTGAGA 45 **** ******** ************* ************ consensus_11963#0 AAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATG 714 consensus_11963#1 AAATTGAAAGATGATGTGATCATGTAATTGTAACTTGTAAGTACTTGCTAAAGATACAC- 104 ************************************************ * ** *** consensus_11963#0 CGATTTTGAGTAAAATACGCTAATGGTTCTTAAACTTAAAAAAA 758 consensus_11963#1 TGATCCA----AAAATTTGCCTCTTGTTTGCAAC---------- 134 *** ***** ** * *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||