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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2257 fasta sequence
[CCAATCCCAGCCATCAATACCTGCCTCCGCTTCGCCATCTCTCCCGAAGCCTCCTCTCTCTCTCTCTCTCCCCCCGATTCCACCACACGCAATCCAATTCCAACCTCGTGTGCTTCCACTTGTGCGTTTCGCCCGCTGCTGTGAACGTACTGCGAGATGGCAGCGGCGGCGGCGGCGGCGGAGGCGAAGCACCGGAAGGAGGAGGAGGAGGACGAGGAGGAGATGACGCTGGAGGACGGCGACATCGAGGAGAGCCCGCGCCGCAGCTTCGACGACGACTACGAGGACGGCGGGAGCGGCGACGACGACCGGGATGACGACGGCGAAGGTTTGGGATCGCCTCGCTCGTTCCAGTCCCGCCAGTGGCCGCAGAGCTACCGAGAAACAACTGACACCTATACAATTGCTGCATCTCCGAGCTTTGGTTACTTGGGTCCCTCTACAAGCAAATACTCGATCCTTGATGGTGGTCGTAGTAGTCTGGGATCCGACCTGAAGTTGCCCTTGTTGTCTGATAAGCTAGATGGGAAGCAAGACTCTGTCAAGAGCTTGAGAAAGACTCTTGGTTCAGCAATAGATAGGAAAAGCTCGTTACTTACGCAACATACTGGAGAAGTCTACATCGCTCAAGGATGCAGTGTGACACAGACGGTGTTCAATGGGGTTAATGTACTTGCTGGTGTTGGACTTCTTTCCACTCCATTTACAATTCATGAAGCTGGATGGGTAGGCCTTGCGGTCCTAGCTATGTTTGCTATTGTTTGCTGTTATACTGGAGTTCTGATGAAACACTGTTTTGAGAGCAAAGATGGTATTTCTACATATCCAGACATTGGCGAGGCTGCTTTTGGAAGGATT-GGTCGTCTGCTGATCTCTATTATACTCTATACTGAGCTATATTCATATTGTGTGGAATTCATTATTTTGGAAGGAGATAATATGACATCAATTTTCTCTCATATTGGTTTTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACTGCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCTGGTCTCAACACTCTTAACCTCAAGTATTTTTCTCACTGCGATCATTAATGATATTAAGGCAGCAAATTGAATTGACAAGGTTTATTGAATTTCTTGTGCAGCGGGTGGTGTTATTGCAACTCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTTGACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTCTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCGTCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAATTATAAAAAAAAAAAAAAAAAAACCCT]
[+] EMBL AK066747 [CCAATCCCAGCCATCAATACCTGCCTCCGCTTCGCCATCTCTCCCGAAGCCTCCTCTCTCTCTCTCTCTCCCCCCGATTCCACCACACGCAATCCAATTCCAACCTCGTGTGCTTCCACTTGTGCGTTTCGCCCGCTGCTGTGAACGTACTGCGAGATGGCAGCGGCGGCGGCGGCGGCGGAGGCGAAGCACCGGAAGGAGGAGGAGGAGGACGAGGAGGAGATGACGCTGGAGGACGGCGACATCGAGGAGAGCCCGCGCCGCAGCTTCGACGACGACTACGAGGACGGCGGGAGCGGCGACGACGACCGGGATGACGACGGCGAAGGTTTGGGATCGCCTCGCTCGTTCCAGTCCCGCCAGTGGCCGCAGAGCTACCGAGAAACAACTGACACCTATACAATTGCTGCATCTCCGAGCTTTGGTTACTTGGGTCCCTCTACAAGCAAATACTCGATCCTTGATGGTGGTCGTAGTAGTCTGGGATCCGACCTGAAGTTGCCCTTGTTGTCTGATAAGCTAGATGGGAAGCAAGACTCTGTCAAGAGCTTGAGAAAGACTCTTGGTTCAGCAATAGATAGGAAAAGCTCGTTACTTACGCAACATACTGGAGAAGTCTACATCGCTCAAGGATGCAGTGTGACACAGACGGTGTTCAATGGGGTTAATGTACTTGCTGGTGTTGGACTTCTTTCCACTCCATTTACAATTCATGAAGCTGGATGGGTAGGCCTTGCGGTCCTAGCTATGTTTGCTATTGTTTGCTGTTATACTGGAGTTCTGATGAAACACTGTTTTGAGAGCAAAGATGGTATTTCTACATATCCAGACATTGGCGAGGCTGCTTTTGGAAGGATT GGTCGTCTGCTGATCTCTATTATACTCTATACTGAGCTATATTCATATTGTGTGGAATTCATTATTTTGGAAGGAGATAATATGACATCAATTTTCTCTCATATTGGTTTTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACTGCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCTGGTCTCAACACTCTTAACCTCAAGTATTTTTCTCACTGCGATCATTAATGATATTAAGGCAGCAAATTGAATTGACAAGGTTTATTGAATTTCTTGTGCAGCGGGTGGTGTTATTGCAACTCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTTGACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTCTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCGTCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCCTTGAAGTG ]
[+] EMBL CF324127 [ GCCGCAGAGCTACCGAGAAACAACTGACACCTATACAATTGCTGCATCTCCGAGCTTTGGTTACTTGGGTCCCTCTACAAGCAAATACTCGATCCTTGATGGTGGTCGTAGTAGTCTGGGATCCGACCTGAAGTTGCCCTTGTTGTCTGATAAGCTAGATGGGAAGCAAGACTCTGTCAAGAGCTTGAGAAAGACTCTTGGTTCAGCAATAGATAGGAAAAGCTCGTTACTTACGCAACATACTGGAGAAGTCTACATCGCTCAAGGATGCAGTGTGACACAGACGGTGTTCAATGGGGTTAATGTACTTGCTGGTGTTGGACTTCTTTCCACTCCATTTACAATTCATGAAGCTGGATGGGTAGGCCTTGCGGTCCTAGCTATGTTTGCTATTGTTTGCTGTTATACTGGAGTTCTGATGAAACACTGTTTTGAGAGCAAAGATGGTATTTCTACATATCCAGACATTGGCGAGGCTGCTTTTGGAAGGATTGGGTCGTCTGCTGATCTCTATTATACTCTATACTGAGC ]
[+] EMBL CA999268 [ AACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTCTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCATCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGA ]
[-] EMBL CF325798 [ TTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCNCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCAAAAAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAATTATAAAAAAAAAAAAAAAAAAACCCT]
consensusID : consensus_11966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1200 fasta sequence
[TTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACTGCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCTGCGGGTGGTGTTATTGCAACTCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTTGACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCATCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAATTATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTT]
[+] EMBL AK060825 [TTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACTGCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCTGCGGGTGGTGTTATTGCAACTCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTTGACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTGCTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATTCACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTATCATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTGAATCTTCCTAAACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATATGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCATCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAATTATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTT]
[+] EMBL AA750723 [ AGGACTGCCCTTGTTGCATCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAACGACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCATCATAAGCGCTGCTCTTGGAACATACTC ]
consensusID : consensus_11966#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence
[CGCCCACCGTCCGCCCACGCGTCCGCGCGTGGTAG--CCAACACCAAAAATCGCTCTCTTTCTTTTTTGTCNCTTTTGTTTGTCAACTACATCCGTGGTTGACATTTTTGCTTCAATCTCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGNTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATAATTATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTTGCAACCCTTGTTNCCAAGCANAAAAA]
[+] EMBL AU031717 [CGCCCACCGTCCGCCCACGCGTCCGCGCGTGGTAG CCAACACCAAAAATCGCTCTCTTTCTTTTTTGTCNCTTTTGTTTGTCAACTACATCCGTGGTTGACATTTTTGCTTCAATCTCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGNTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGGCTGCTTGCTTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATAATTATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTTGCAACCCTTGTTNCCAAGCANAAAAA]
[+] EMBL OSR07591A [ CCGCGCGT GTAGGACCAACACCAAAAATCGCTCTCTTTCTTTTTTGTTTCTTTTGTTTGTCAACTACATCCGTGGTTGACATTTTTGTTTCAATCTCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCACCATAAGCGCTGCTCTTGGAACATATTCGTCGGTACTCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGTCATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGAATTACCGAGTTCACTGTAATTATTCGGCCCAACCATGTAATGCATGTACCTGCATA GCTGCTTGCTTCTCAGTTCCTTGAGGTGG ATATCTTCATCA TTGCTTATA ]
consensusID : consensus_11966#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[ATCTTTGTGGCCGTCATGAATGCCTNGCCGNNGGCTTCTTGAAGATTAGGCAAATNAAGCACGACNGCCCAGGTCGTNTGCAAGTATTGGGTGATAATAATGATTGGGCACCATGAAGCGCTGCTCTTGGAACATGACTCGTGCGGTACTGCAGAATTGTGGAGAACTACTGAATTACCGAAACCTGAGCTCGCGTGCAGTGGCAGTTGCCCAGCAGGTGAGGCCACAGGGCATGGTGCATGATGCTGATTGACTGCACCCCGCTGTGACGGTTACGGCGCTGCAAAATGGGTGCAATATGCGTGTGGTTTTATCCAGAATGTGTTGCTGAGAATGTGACCGAGGTTGCACTGGTGAATNGATTGCGACCCCAACCATGGTGAATGGCATGGGACCTGCATGAGCTGCTTGCTGTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTACATTATANGTACTCATTAATTATAAAAAAAAAAAAA]
[+] EMBL BI806141 [ATCTTTGTGGCCGTCATGAATGCCTNGCCGNNGGCTTCTTGAAGATTAGGCAAATNAAGCACGACNGCCCAGGTCGTNTGCAAGTATTGGGTGATAATAATGATTGGGCACCATGAAGCGCTGCTCTTGGAACATGACTCGTGCGGTACTGCAGAATTGTGGAGAACTACTGAATTACCGAAACCTGAGCTCGCGTGCAGTGGCAGTTGCCCAGCAGGTGAGGCCACAGGGCATGGTGCATGATGCTGATTGACTGCACCCCGCTGTGACGGTTACGGCGCTGCAAAATGGGTGCAATATGCGTGTGGTTTTATCCAGAATGTGTTGCTGAGAATGTGACCGAGGTTGCACTGGTGAATNGATTGCGACCCCAACCATGGTGAATGGCATGGGACCTGCATGAGCTGCTTGCTGTCTCAGTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCATCACTGTTGTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTACATTATANGTACTCATTAATTATAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11966#0 CCAATCCCAGCCATCAATACCTGCCTCCGCTTCGCCATCTCTCCCGAAGCCTCCTCTCTC 60
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 TCTCTCTCTCCCCCCGATTCCACCACACGCAATCCAATTCCAACCTCGTGTGCTTCCACT 120
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 TGTGCGTTTCGCCCGCTGCTGTGAACGTACTGCGAGATGGCAGCGGCGGCGGCGGCGGCG 180
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GAGGCGAAGCACCGGAAGGAGGAGGAGGAGGACGAGGAGGAGATGACGCTGGAGGACGGC 240
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GACATCGAGGAGAGCCCGCGCCGCAGCTTCGACGACGACTACGAGGACGGCGGGAGCGGC 300
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GACGACGACCGGGATGACGACGGCGAAGGTTTGGGATCGCCTCGCTCGTTCCAGTCCCGC 360
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 CAGTGGCCGCAGAGCTACCGAGAAACAACTGACACCTATACAATTGCTGCATCTCCGAGC 420
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 TTTGGTTACTTGGGTCCCTCTACAAGCAAATACTCGATCCTTGATGGTGGTCGTAGTAGT 480
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 CTGGGATCCGACCTGAAGTTGCCCTTGTTGTCTGATAAGCTAGATGGGAAGCAAGACTCT 540
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GTCAAGAGCTTGAGAAAGACTCTTGGTTCAGCAATAGATAGGAAAAGCTCGTTACTTACG 600
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 CAACATACTGGAGAAGTCTACATCGCTCAAGGATGCAGTGTGACACAGACGGTGTTCAAT 660
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GGGGTTAATGTACTTGCTGGTGTTGGACTTCTTTCCACTCCATTTACAATTCATGAAGCT 720
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GGATGGGTAGGCCTTGCGGTCCTAGCTATGTTTGCTATTGTTTGCTGTTATACTGGAGTT 780
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 CTGATGAAACACTGTTTTGAGAGCAAAGATGGTATTTCTACATATCCAGACATTGGCGAG 840
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GCTGCTTTTGGAAGGATTGGTCGTCTGCTGATCTCTATTATACTCTATACTGAGCTATAT 900
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 TCATATTGTGTGGAATTCATTATTTTGGAAGGAGATAATATGACATCAATTTTCTCTCAT 960
consensus_11966#1 ------------------------------------------------------------
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 ATTGGTTTTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACT 1020
consensus_11966#1 -------TTGATTGGCTTGGCGTCCATATTGATGGGAAACATTTCTTTGGAGTGTTGACT 53
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCT 1080
consensus_11966#1 GCTCTAATAGTCTTGCCTACAGTATGGTTGAGAGATCTTCGGGTTCTCTCCTACCTTTCT 113
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GGTCTCAACACTCTTAACCTCAAGTATTTTTCTCACTGCGATCATTAATGATATTAAGGC 1140
consensus_11966#1 G----------------------------------------------------------- 114
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 AGCAAATTGAATTGACAAGGTTTATTGAATTTCTTGTGCAGCGGGTGGTGTTATTGCAAC 1200
consensus_11966#1 -----------------------------------------CGGGTGGTGTTATTGCAAC 133
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 TCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTT 1260
consensus_11966#1 TCTTCTTGTTTTCCTCTCTGTCGTTTTAGTTGGCGCTACTGATGGCGTAGGGTTTCATTT 193
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTG 1320
consensus_11966#1 GACTGGGAAAGCAGTAAACTTAGGTGGTATACCGTTTGCTATTGGCATTTATGGTTTCTG 253
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 CTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATT 1380
consensus_11966#1 CTACTCTGGGCACTCAGTGTTTCCAAATATTTACCAATCAATGTCAGACCGCACGAAATT 313
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 CACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTAT 1440
consensus_11966#1 CACTAAGGCACTGTTTATATGCTTTGCAATTTGCACAGCAATATATGGCTCGTTTGCTAT 373
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 CATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAACTCTGAATCTTCCTAA 1500
consensus_11966#1 CATTGGCTATCTCATGTTCGGAGATAAAACTCTCTCGCAAATAAC--TGAATCTTCCTAA 431
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 ACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATA 1560
consensus_11966#1 ACATTCATTTGCCTCCAAGGTCGCACTGTGGACCACGGTTATCAACCCTTTCACCAAATA 491
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 TGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTT 1620
consensus_11966#1 TGCCCTGTTGTTAAACCCATTGGCTCGGAGTTTAGAGGAGTTGCGCCCTGAAGGATTTTT 551
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 GAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCGTCAACCGTGTGCAT 1680
consensus_11966#1 GAACGAAACAATCTGCTCTATTATACTGAGGACTGCCCTTGTTGCATCAACCGTGTGCAT 611
consensus_11966#3 ------------------------------------------------------------
consensus_11966#2 ------------------------------------------------------------
consensus_11966#0 TGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTAT 1740
consensus_11966#1 TGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTTATTGGATCTCTGTTGAGTAT 671
consensus_11966#3 ----------------------------------------------------------AT 2
consensus_11966#2 ----------CGCCCACCGTCCGCCCACGCGTCCGCGCGTGGTAG-CCAACACCAAAAAT 49
**
consensus_11966#0 ACTTGTGGCCGTCAT-AATGCCTGCACTGTG-CTTCTTGAAGATTAGGCAA-AATAAAGC 1797
consensus_11966#1 ACTTGTGGCCGTCAT-AATGCCTGCACTGTG-CTTCTTGAAGATTAGGCAA-AATAAAGC 728
consensus_11966#3 CTTTGTGGCCGTCATGAATGCCTNGCCGNNGGCTTCTTGAAGATTAGGCAA-A-TNAAGC 60
consensus_11966#2 CGCTCTCTTTCTTTTTTGTCNCTTTTGTTTGTCAACTACATCCGTGGTTGACATTTTTGC 109
* * * * * ** * * ** * * * * * * **
consensus_11966#0 AACGACTGCCCAGGTCGTT-GCAAGTATTGGT--ATAATAAT-ATTGGGCACCAT-AAGC 1852
consensus_11966#1 AACGACTGCCCAGGTCGTT-GCAAGTATTGGT--ATAATAAT-ATTGGGCACCAT-AAGC 783
consensus_11966#3 A-CGACNGCCCAGGTCGTNTGCAAGTATTGGGTGATAATAATGATTGGGCACCATGAAGC 119
consensus_11966#2 TTCAAT--CTCAGGTCGTT-GCAAGTATTGGT--ATAATAAT-ATTGGGCACCAT-AAGC 162
* * * ******** *********** ******** ************ ****
consensus_11966#0 GCTGCTCTTGGAACAT-ATTCGT-CGGTACT-CAGAATTGTGGAGAACTACT-AATTAC- 1907
consensus_11966#1 GCTGCTCTTGGAACAT-ATTCGT-CGGTACT-CAGAATTGTGGAGAACTACT-AATTAC- 838
consensus_11966#3 GCTGCTCTTGGAACATGACTCGTGCGGTACTGCAGAATTGTGGAGAACTACTGAATTACC 179
consensus_11966#2 GCTGCTCTTGGAACAT-ATTCGT-CGGTACT-CAGAATTGTGGAGAACTACT-AATTAC- 217
**************** * **** ******* ******************** ******
consensus_11966#0 GAAACCT-AGCTCGCGTGCAGTG-CAGTT-CCCAGCAGGTGAGGCCACAGG-CATG---- 1959
consensus_11966#1 GAAACCT-AGCTCGCGTGCAGTG-CAGTT-CCCAGCAGGTGAGGCCACAGG-CATG---- 890
consensus_11966#3 GAAACCTGAGCTCGCGTGCAGTGGCAGTTGCCCAGCAGGTGAGGCCACAGGGCATGGTGC 239
consensus_11966#2 GAAACCT-AGCTCGCGTGCAGTG-CAGTT-CCCAGCAGGTGAGGCCACAGG-CATG---- 269
******* *************** ***** ********************* ****
consensus_11966#0 -TCATATCTATT-ACT-CACCCCGCTT--ACGGTTACGGCGCTCAAAAATGGTCA-AATA 2013
consensus_11966#1 -TCATATCTATT-ACT-CACCCCGCTT--ACGGTTACGGCGCTCAAAAATGGTCA-AATA 944
consensus_11966#3 ATGATGCTGATTGACTGCACCCCGCTGTGACGGTTACGGCGCTGCAAAATGGGTGCAATA 299
consensus_11966#2 -TCATATCTATT-ACT-CACCCCGCTT--ACGNTTACGGCGCTCAAAAATGGTCA-AATA 323
* ** *** *** ********* *** ********** ******* ****
consensus_11966#0 T-CGTGTG--TTTATC-AGAATTT--TGCTAGAATT---ACCGAGTTCACTGTAATTATT 2064
consensus_11966#1 T-CGTGTG--TTTATC-AGAATTT--TGCTAGAATT---ACCGAGTTCACTGTAATTATT 995
consensus_11966#3 TGCGTGTGGTTTTATCCAGAATGTGTTGCTGAGAATGTGACCGAGGTTGCACTGGTGAAT 359
consensus_11966#2 T-CGTGTG--TTTATC-AGAATTT--TGCTAGAATT---ACCGAGTTCACTGTAATTATT 374
* ****** ****** ***** * **** * * ****** * * * * * *
consensus_11966#0 CGA-------CCCAACCATGT--AATG-CATGT-ACCTGCAT-AGCTGCTTGCT-TCTCA 2111
consensus_11966#1 CGA-------CCCAACCATGT--AATG-CATGT-ACCTGCAT-AGCTGCTTGCT-TCTCA 1042
consensus_11966#3 NGATTGCGACCCCAACCATGGTGAATGGCATGGGACCTGCATGAGCTGCTTGCTGTCTCA 419
consensus_11966#2 CGA-------CCCAACCATGT--AATG-CATGT-ACCTGCATAGGCTGCTTGCT-TCTCA 422
** ********** **** **** ******** ********** *****
consensus_11966#0 GTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTT 2171
consensus_11966#1 GTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTT 1102
consensus_11966#3 GTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCA-TCACTGTT 478
consensus_11966#2 GTTCCTTGAAGTGGAATATCTTCATCACTTGCTTATACCGTGTTTCTGTCAATCACTGTT 482
*************************************************** ********
consensus_11966#0 GTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAAT 2231
consensus_11966#1 GTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCAATTAAT 1162
consensus_11966#3 GTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTA--CATTATANGTACTCA-TTAAT 535
consensus_11966#2 GTTAGGTCTATCCAGCATGTTACTTAAACCGCCTTTAGCAATTATATGTACTCA-ATAAT 541
************************************* ****** ******* ****
consensus_11966#0 TATAAAAAAAAAAAAAAAAAAACCCT---------------------------------- 2257
consensus_11966#1 TATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTT---------------------- 1200
consensus_11966#3 TATAAAAAAAAAAAAA-------------------------------------------- 551
consensus_11966#2 TATAGATCGAGATTGCTGGATATTGAGTGTTGCAACTTGCAACCCTTGTTNCCAAGCANA 601
**** * * *
consensus_11966#0 ----
consensus_11966#1 ----
consensus_11966#3 ----
consensus_11966#2 AAAA 605
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||