These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1761 fasta sequence [CTCTCGTCTCCTCCTCCGGCGCCGATCCCCTCCCGAATTCCGCCATGGATCCGGCGCCGCAGGCCCACCCCATCCTCTCCTACGTGCTCTCCCGCCTCCCCACCCTCGCCAAGGCCCGCCCGGCCGGCGGCGGCGGCGACTTCGACATCGAGCAGCCGCCCGTGCACACGCCGTCGCCGCGGACGCCCTCCACCGCGGGGGAGTTCGAGCTCGTGGAGCGTATGCCGGGGCTGCGCCACCCGTCCGTGCTCCGCGCCATGACCCGCGCCGTCGCCGACGTGTCGGCCGCGCGCTCCGCGCTCCAGGTCCTCGGCCCGCGGCCCGACCACGAGCTCGTCGACTCCTCCCGCGCGATCGTCG-CCTCGACCGACGCCGAGGCCGGGGGCTCGCGGCGGGTCCCCGAGGGGGACCTCGAGGCCTGCCGCGCCGTGGTGCGGCTCGAGGAGACGCACGACGCCTACGAGGCGCTGCTGCAGGAGGCCGAGGGGAGGCTCGAGGCGGTGTACCGGTCGGCGATGGAGGGGAAGGACCTGGAGGAGCCCGACGGGAGGGACGAATCGGCGGCGGCAGCCGCCGGGGATGATGCTGCGGTGCATGAGGAGGTGATCGCGGTGCTGAGGCACGCCGAGGAGGGCAAGCCGGTGGAGAGCGTCCGCCTCGTGGACCGGCAGCTGCGCCACCTGCCGGAGGCGTTCGGGAGGATCCAGGGGCTCCGCGTGCTCGATGTCTCGCGCAATCAGCTCGAGGTTATTCCAGATGCTATAGGAGGACTTGATCATCTTGAAGAGCTTCGTCTTGCTTCCAATGCCTTGATTTCTCTTCCTGATTCCATTGGACTGCTATTGAATTTGAGGATTCTGAATGTGGGAAGCAACAGGCTAAGGTCATTGCCAGATAGCATCTCAAAGTGCAGGTCATTAATTGAGCTTGATGCGAGCTACAACGGGCTCGCTTATCTGCCAACCAACATTGGGTATGAGCTGGTAAATCTGCGGAAACTCTGGGTCCATATGAACAAGTTGCGGTCACTTCCATCATCTATCTGCGAGATGAGATCATTGTACCTCCTGGATGCACATTTCAATGAACTATGTGGTCTGCCATCTGCCATAGGGAAACTTTCAAGTCTTGAAATTCTGAACCTGAGCAGCAACTTTAGTGACCTGAAGGATCTCCCTGCTTCTTTCGGTGACCTGCTGAATCTGCGCGAG-CTTGACCTCAGCAACAACCAGATCCATGCTCTT-CCCGACAATTTT-GGTCGGCTGGATAAGCTAGAGAAGCTCAACCTGGAGCAAAATCCCCTTTCTATGCCGCCAATGGAGATCGTGAACAAAGGCGTGGACGCGGTGAAAGAATACATGTTGCAGAGGTGGCTTGACATCTTGCTCGAGGAAGAACGGAAGAGCATCGCAGCAGCGGAGAGCCCTCAAGCACCGACCACTCCTTCGGCCTGGCTGGCACGCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTTGTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTACTGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCTTACCATCTCATCTGGGAAAATCGTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGCTAGGCTTGCATCCCCCAAAGCAGGCTTTGGGGTTTATTTTGCCCGTTTTAACTTCCGGACGTCCTTTTCATAAAAAAAAAGA] [+] EMBL CB662253 [CTCTCGTCTCCTCCTCCGGCGCCGATCCCCTCCCGAATTCCGCCATGGATCCGGCGCCGCAGGCCCACCCCATCCTCTCCTACGTGCTCTCCCGCCTCCCCACCCTCGCCAAGGCCCGCCCGGCCGGCGGCGGCGGCGACTTCGACATCGAGCAGCCGCCCGTGCACACGCCGTCGCCGCGGACGCCCTCCACCGCGGGGGAGTTCGAGCTCGTGGAGCGTATGCCGGGGCTGCGCCACCCGTCCGTGCTCCGCGCCATGACCCGCGCCGTCGCCGACGTGTCGGCCGCGCGCTCCGCGCTCCAGGTCCTCGGCCCGCGGCCCGACCACGAGCTCGTCGACTCCTCCCGCGCGATCGTCG CCTCGACCGACGCCGAGGCCGGGGGCTCGCGGCGGGTCCCCGAGGGGGACCTCGAGGCCTGCCGCGCCGTGGTGCGGCTCGAGGAGACGCACGACGCCTACGAGGCGCTGCTGCAGGAGGCCGAGGGGAGGCTCGAGGCGGTGTACCGGTCGGCGATGGAGGGGAAGGACCTGGAGGAGCCCGACGGGAGGGACGAATCGGCGGCGGCAGCCGCCGGGGATGATGCTGCGGTGCATGAGGAGGTGATCGCGGTGCTGAGGCACGCCGAGGAGGGCAAGCCGGTGGAGAGCGTCCGCCTCGTGGACCGGCAGCTGCGCCACCTGCCGGAGGCGTTCGGGAGGATCCAGGGGCTCCGCGTGCTCGATGTCTCGCGCAATCAGCTCGAGGTTATTCCAGATGCTATACGAGGA ] [+] EMBL CB652065 [ TCCTACGCGTTCTCCCGCCTCCCCACCCTCGCCAAGGCCCGCCCGGCCGGCGGCGGCGGCGACTTCTACATCGAGCAGCCGCCCGTGCACACGCCGTCGCCGCGGACGCCCTCCACCGCGGGGGAGTTCGAGCTCGTGGAGCGTATGCCGGGGCTGCGCCACCCGTCCGTGCTCCGCGCCATGACCCGCGCCGTCGCCGACGTGTCGGTCGCGCGCTCCGCGCTCCAGGTCCTCGGACCGCGGCCCGACCACGAACTCGTCGACTCCTCCCGCGCGATCGTCGACCGCGACCGACGCCGAGGCCGGGGGCTCGCGGCGGGTCCCCGAGGGGGACCTCGAGGCCTGCCGCGCCGTGGTGCGGCTCGAGGAGACGCACGACGCCTACCAGGCGCTGCTGCACGATGCCGAGGGGAGGCTCAAGGCGGTGTACCGGCCCGCGATGGAGGGGAACGACCTGAACGAGCCCAACGGGAGGGACGAATCGGCGGCGGCAGCCGCCGGGGATGA ] [-] EMBL CB662254 [ GGACCTGGAGGAGCCCGACGGGAGGGACGAATCGGCGGCGGCAGCCGCCGGGGATGATGCTGCGGTGCAGGAGGAGGTGATCGCGGTGCTGAGGCAGGCCGAGGAGGGCAAGCCGGTGGAGAGCGTCCGCCTCGTGGACCGGCAGCTGCGCCACCTGCCGGAGGCGTTCGGGAGGATCCAGGGGCTCCGCGTGCTCGATGTCTCGCGCAATCAGCTCGAGGTTATTCCAGATGCTATAGGAGGACTTGATCATCTTGAAGAGCTTCGTCTTGCTTCCAATGCCTTGATTTCTCTTCCTGATTCCATTGGACTGCTATTGAATTTGAGGATTCTGAATGTGGGAAGCAACAGGCTAAGGTCATTGCCAGATAGCATCTCAAAGTGCAGGTCATTAATTGAGCTTGATGCGAGCTACAACGGGCTCGCTTATCTGCCAACCAACATTGGGTATGAGGTGGTAAATCTGCGGAATCTCTGGGTCCATATGAACAAGTTGCGGTCACTTCCATCATCTATCTGCGAGATGAGATCATTGTACCTCCTGGATGCACATTTCAATGAACTATGTGGTCTGCCATGTGCCATAGGGAAACTTTCAAGTCTGGAAATTC GCCCCTGAGCAGC ] [+] EMBL AK071870 [ GATGCTATAGGAGGACTTGATCATCTTGAAGAGCTTCGTCTTGCTTCCAATGCCTTGATTTCTCTTCCTGATTCCATTGGACTGCTATTGAATTTGAGGATTCTGAATGTGGGAAGCAACAGGCTAAGGTCATTGCCAGATAGCATCTCAAAGTGCAGGTCATTAATTGAGCTTGATGCGAGCTACAACGGGCTCGCTTATCTGCCAACCAACATTGGGTATGAGCTGGTAAATCTGCGGAAACTCTGGGTCCATATGAACAAGTTGCGGTCACTTCCATCATCTATCTGCGAGATGAGATCATTGTACCTCCTGGATGCACATTTCAATGAACTATGTGGTCTGCCATCTGCCATAGGGAAACTTTCAAGTCTTGAAATTCTGAACCTGAGCAGCAACTTTAGTGACCTGAAGGATCTCCCTGCTTCTTTCGGTGACCTGCTGAATCTGCGCGAG CTTGACCTCAGCAACAACCAGATCCATGCTCTT CCCGACAATTTT GGTCGGCTGGATAAGCTAGAGAAGCTCAACCTGGAGCAAAATCCCCTTTCTATGCCGCCAATGGAGATCGTGAACAAAGGCGTGGACGCGGTGAAAGAATACATGTTGCAGAGGTGGCTTGACATCTTGCTCGAGGAAGAACGGAAGAGCATCGCAGCAGCGGAGAGCCCTCAAGCACCGACCACTCCTTCGGCCTGGCTGGCACGCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTTGTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTACTGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCTTACCATCTCATCTGGGAAAATCGTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGCTAGGCTTGCATCCCCCAAAGCAGGCTTTGGGGTTTATTTTGCCCGTTTTAACTTCCGGA ] [+] EMBL C27183 [ CAGGCTAAGGTCATTGCCAGATAGCATCTCAAAGTGCAGGTCATTAATTGAGCTTGATGCGAGCTACAACGGGCTCGCTTATCTGCCAACCAACATTGGGTATGAGCTGGTAAATCTGCGGAAACTCTGGGTCCATATGAACAAGTTGCGGTCACTTCCATCATCTATCTGCGAGATGAGATCATTGTACCTCCTGGATGCACATTTCAATGAACTATGTGGTCTGCCATCTGCCATAGGGAAACTTTCAAGTCTTGAAATTCTGAACCTGAGCAGCAACTTTAGTGACCTGAAGGATCTCCCTGCTTCTTTCGGTGACCTGCTGAATCTGCGCGAGTTTTGACCTCAGCAACAACCAGATCCATGCTCTTNCCCGACAATTTTGGGTCGGCTGGATAAGCTAGAGAAGCTCAANCTGGGGCAAAATCCCCTTT TATGCCGCCAAT ] [-] EMBL CB652066 [ ATGCGAGCTACAACGGGCTCGCTTATCTGCCAACCAACATTGGGTATGAGCTGGTAAATCTGCGGAAACTCTGGGTCCATATGAACAAGTTGCGGTCACTTCCATCATCTATCTGCGAGATGAGATCATTGTACCTCCTGGATGCACATTTCAATGAACTATGTGGTCTGCCATCTGCCATAGGGAAACTTTCAAGTCTTGAAATTCTGAACCTGAGCAGCAACTTTAGTGACCTGAAGGATCTCCCTGCTTCTTTCGGTGACCTGCTGAATCTGCGCGAG CTTGACCTCAGCAACAACCAGATCCATGCTCTT CCCGACAATTTT GGTCGGCTGGATAAGCTAGAGAAGCTCAACCTGGAGCAAAATCCCCTTTCTATGCCGCCAATGGAGATCGTGAACAAAGGCGTGGACGCGGTGAAAGAATACATGTTGCAGAGGTGGCTTGACATCTTGCTCGAGGAAGAACGGAAGAGCATCGCAGCAGCGGAGAGCCCTCAAGCACCGACCACTCCTTCGGCCTGGCTGGCACGCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTTGTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTACTGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCTTACCATCTCATCTGGGAAAATCGTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGCTAGGCTTGCATCCCCCAAAGCAGGCTTTGGGGTTTAAGGTGCCCGTTTTAACTTCCGGACGTCCTTTTCATAAAAAAAAAGA] consensusID : consensus_11974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 431 fasta sequence [AGGAAGAACGGAAGAGCATCGCAAGCAACGGAGAGCCCTCAAGCACCGACCACTCCTTCGGCCTGGCTGGCACTCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTTGTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTACTGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCTTACCATCTCATCTGGGAAAATCTTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGCTAGGCTTGCATCCCCCAAAACAGGCTTTGGGGTTTATTTTGCCCGTTTTAACTTCCGGACGTCCTTTTCATAGCTTCACTTGTTACAGTATTAAAATACTTTGTCGAANAAAAAAGTGGAAACAAAAATTAAAAAAAAAA] [+] EMBL AU166831 [AGGAAGAACGGAAGAGCATCGCAAGCAACGGAGAGCCCTCAAGCACCGACCACTCCTTCGGCCTGGGTGGCACGCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTTGTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTACTGAAAGCGCTCACCTGTGTGGTGTTTGTGCNCCGTGTACATACTATAAGCGTTCCATGCTTACCATNTCATCTGGGAAAATCGTTTTGTGTTCCTGGTGAGTCGAGCCANACACTCGTGCTAGGCTTGCATCCCCCAAAGCAGGCTTTNGGGTTTATTTTGCCCGTTTTAACTTCCGGACGTCCTTTTNANANCTTCACNTGTTACANNAATAAAATACTTTGTCGAANAAAAAAGTGGAAACAAAAATTAAAAAAAAAA] [+] EMBL CF327682 [ GACCACTCCTTCGGCCTGGCTGGCACTCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTTGTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTACTGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCTTACCATCTCATCTGGGAAAATCTTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGCTAGGCTTGCATCCCCCAAAACAGGCTTTGGGGTTTATTTTGCCCGTTTTAACTTCCGGACGTCCTTTTCATAGCTTCACTTGTTACAGTATTA ] [-] EMBL CF327683 [ ACCACTCCTTCGGCCTGGCTGGCACTCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTTGTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTACTGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCTTACCATCTCATCTGGGAAAATCTTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGCTAGGCTTGCATCCCCCAAAACAGGCTTTGGGGTTTATTTTGCCCGTTTTAACTTCCGGACGTCCTTTTCATAGCTTCACTTGTTACAGTATTAt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11974#0 CTCTCGTCTCCTCCTCCGGCGCCGATCCCCTCCCGAATTCCGCCATGGATCCGGCGCCGC 60 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 AGGCCCACCCCATCCTCTCCTACGTGCTCTCCCGCCTCCCCACCCTCGCCAAGGCCCGCC 120 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 CGGCCGGCGGCGGCGGCGACTTCGACATCGAGCAGCCGCCCGTGCACACGCCGTCGCCGC 180 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 GGACGCCCTCCACCGCGGGGGAGTTCGAGCTCGTGGAGCGTATGCCGGGGCTGCGCCACC 240 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 CGTCCGTGCTCCGCGCCATGACCCGCGCCGTCGCCGACGTGTCGGCCGCGCGCTCCGCGC 300 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TCCAGGTCCTCGGCCCGCGGCCCGACCACGAGCTCGTCGACTCCTCCCGCGCGATCGTCG 360 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 CCTCGACCGACGCCGAGGCCGGGGGCTCGCGGCGGGTCCCCGAGGGGGACCTCGAGGCCT 420 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 GCCGCGCCGTGGTGCGGCTCGAGGAGACGCACGACGCCTACGAGGCGCTGCTGCAGGAGG 480 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 CCGAGGGGAGGCTCGAGGCGGTGTACCGGTCGGCGATGGAGGGGAAGGACCTGGAGGAGC 540 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 CCGACGGGAGGGACGAATCGGCGGCGGCAGCCGCCGGGGATGATGCTGCGGTGCATGAGG 600 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 AGGTGATCGCGGTGCTGAGGCACGCCGAGGAGGGCAAGCCGGTGGAGAGCGTCCGCCTCG 660 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TGGACCGGCAGCTGCGCCACCTGCCGGAGGCGTTCGGGAGGATCCAGGGGCTCCGCGTGC 720 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TCGATGTCTCGCGCAATCAGCTCGAGGTTATTCCAGATGCTATAGGAGGACTTGATCATC 780 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TTGAAGAGCTTCGTCTTGCTTCCAATGCCTTGATTTCTCTTCCTGATTCCATTGGACTGC 840 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TATTGAATTTGAGGATTCTGAATGTGGGAAGCAACAGGCTAAGGTCATTGCCAGATAGCA 900 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TCTCAAAGTGCAGGTCATTAATTGAGCTTGATGCGAGCTACAACGGGCTCGCTTATCTGC 960 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 CAACCAACATTGGGTATGAGCTGGTAAATCTGCGGAAACTCTGGGTCCATATGAACAAGT 1020 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TGCGGTCACTTCCATCATCTATCTGCGAGATGAGATCATTGTACCTCCTGGATGCACATT 1080 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TCAATGAACTATGTGGTCTGCCATCTGCCATAGGGAAACTTTCAAGTCTTGAAATTCTGA 1140 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 ACCTGAGCAGCAACTTTAGTGACCTGAAGGATCTCCCTGCTTCTTTCGGTGACCTGCTGA 1200 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 ATCTGCGCGAGCTTGACCTCAGCAACAACCAGATCCATGCTCTTCCCGACAATTTTGGTC 1260 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 GGCTGGATAAGCTAGAGAAGCTCAACCTGGAGCAAAATCCCCTTTCTATGCCGCCAATGG 1320 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 AGATCGTGAACAAAGGCGTGGACGCGGTGAAAGAATACATGTTGCAGAGGTGGCTTGACA 1380 consensus_11974#1 ------------------------------------------------------------ consensus_11974#0 TCTTGCTCGAGGAAGAACGGAAGAGCATCGCA-GCAGCGGAGAGCCCTCAAGCACCGACC 1439 consensus_11974#1 ---------AGGAAGAACGGAAGAGCATCGCAAGCAACGGAGAGCCCTCAAGCACCGACC 51 *********************** *** *********************** consensus_11974#0 ACTCCTTCGGCCTGGCTGGCACGCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTT 1499 consensus_11974#1 ACTCCTTCGGCCTGGCTGGCACTCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTT 111 ********************** ************************************* consensus_11974#0 GTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTAC 1559 consensus_11974#1 GTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCCTACCTGGATCAGCAGTAC 171 ************************************************************ consensus_11974#0 TGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCT 1619 consensus_11974#1 TGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCT 231 ************************************************************ consensus_11974#0 TACCATCTCATCTGGGAAAATCGTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGC 1679 consensus_11974#1 TACCATCTCATCTGGGAAAATCTTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGC 291 ********************** ************************************* consensus_11974#0 TAGGCTTGCATCCCCCAAAGCAGGCTTTGGGGTTTATTTTGCCCGTTTTAACTTCCGGAC 1739 consensus_11974#1 TAGGCTTGCATCCCCCAAAACAGGCTTTGGGGTTTATTTTGCCCGTTTTAACTTCCGGAC 351 ******************* **************************************** consensus_11974#0 GTCCTTTTCATAAAAAAAAAGA-------------------------------------- 1761 consensus_11974#1 GTCCTTTTCATAGCTTCACTTGTTACAGTATTAAAATACTTTGTCGAANAAAAAAGTGGA 411 ************ * consensus_11974#0 -------------------- consensus_11974#1 AACAAAAATTAAAAAAAAAA 431 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||