These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1278 fasta sequence [TGACATGGACTGAAGGGGTAGAAAAATTAGGGTTTACTCGAGACTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAGCACTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTT-GGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA-TGTGTACTACTTCCT-GGAAGATGTATACCCGCGGATGACTGGGA-GGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCA-ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTC------TTTTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATGTGGTAGTCTATTGGTAACGATAACTGTATCCATCGTTGTGATGTTTGTCCCTGCGATTTATGGTGTCAGAAATGTTAGAATGTTTTATATACTGTTTGGGTTTGAAGAATATTGGTCGAAGATGACCCTCGAAAAAAAAAAAAAAAAA] [+] EMBL CF311946 [TGACATGGACTGAAGGGGTAGAAAAATTAGGGTTTACTCGAGACTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAGCACTACGAGATCTGGCGCCTCGTCGCCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTTGGGGTTTGTTCACCTTTACTGCTG ] [+] EMBL CB681884 [ ggtcccCTCGAGACTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCTTGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGACGCCGTCGTCACCACCGTCCGCTGCACCCTCTAGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAACACTACTAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCCACATGGTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCACAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCATAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTT GGGTTTGTTCACCTTTGCTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA TGTGTACTACTTCC ] [+] EMBL CF312110 [ TCGAGACTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGATCATTTCGCCCTATCACCTG ] [+] EMBL AK068059 [ CTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGTCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAGCACTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTT GGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA TGTGTACTACTTCCT GGAAGATGTATACCCGCGGATGACTGGGA GGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCA ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTC TTTTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCTTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATGTGGTA ] [-] EMBL CB681885 [ TGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTT GGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA TGTGTACTACTTCCT GGAAGATGTATACCCGCGGATGACTGGGA GGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCA ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTC TTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGAGGGGGATACTTTTCAATGTGGTA ] [-] EMBL CF311947 [ AGCTTCTT GGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA TGTGTACTACTTCCT GGAAGATGTATACCCGCGGATGACTGGGA GGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCACATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGATCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTCTT TTTTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAGAAAaa ] [-] EMBL CA762302 [ TTCTTTAATTTTTTGGGAACCAGTCCATGGGTTGTTTTCCTGGGTTTGAATCCTGGGCACTGTGTACT CTTCCTGGGAGGAGGT CCCCCCCGGATTGCTTGGAGGGCGTCCCCTGAAAAATCCTTCGTTCATCCAGGCGCTATTGGCTGACGACAATGTTGTTGTGGCAGGCCCACCCA ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTC TTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGCGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTTTTAACTGGACCCGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATATGGTAGTCTATTGGTAACGATAACTGTATCCATCGTTGTGATGTTTGTCCCTGCGATTTATGGTGTCAGAAATGTTAGAATGTTTTATATACTGTTTGGGTTTGAAGAATATTGGTCGAAGATGACCCTCGAAAAAAAAAAAAAAAAA] [-] EMBL CF328653 [ TTGTTGTGGCAAGGCCACCCA ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTCTTTTTTTTTTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACGATGCCGCCATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATGTGGTAGTCTATTGGTAACGATAACTGTATCAATCGTTGTGATGTTTGTCCTTGCGATTTATGGTATCAGAAATGTTAGAATGTTTTATAaaaaa ] consensusID : consensus_11990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 864 fasta sequence [TTCGGGTCAATTAGGGTTTACTCGAGACTCGAGAGAGGAGATCATTTCGCCCTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGCTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGGGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCATGTGTACTACTTCCTGGAAGATGTACACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGACGACAATGNTGTTGTGGCAAGGCCACCCAATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGNTACTGATTCGAGAGNTCTTTTTTTTTCATCTGGTCAAATTGCGAAATTGNACAAGCAATGGTCCCGNGTATTTATACAGGCTATAGATCAGANAATTATTGCGCATAANAAAGCATTTAGTAGTATCTGGGGGCAGCTNAATTTCTTACTGGACCCGAAGGGNGAAGGAAAGGGTTTACCAGTTTNAACC] [+] EMBL CA767595 [TTCGGGTCAATTAGGGTTTACTCGAGACTCGAGAGAGGAGATCATTTCGCCCTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGCTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGGGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCATGTGTACTACTTCCTGGAAGATGTACACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGACGACAATGNTGTTGTGGCAAGGCCACCCAATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGNTACTGATTCGAGAGNTCTTTTTTTTTCATCTGGTCAAATTGCGAAATTGNACAAGCAATGGTCCCGNGTATTTATACAGGCTATAGATCAGANAATTATTGCGCATAANAAAGCATTTAGTAGTATCTGGGGGCAGCTNAATTTCTTACTGGACCCGAAGGGNGAAGGAAAGGGTTTACCAGTTTNAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11990#0 TGACATGGACTGAAGGGGTAGAAAAATTAGGGTTTACTCGAGACTCGAGAGAGGAGAGCT 60 consensus_11990#1 ------------------------------------------------------------ consensus_11990#0 CGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGC 120 consensus_11990#1 ------------------------------------------------------------ consensus_11990#0 CCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCG 180 consensus_11990#1 --------------------------------------------------------TTCG 4 *** consensus_11990#0 AGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAGCACTACGAGA 240 consensus_11990#1 GGTCAATTAGGGTTTAC--TCGAGACTCGAG---AGAGGAGATCATTTCGCCCTACGAGA 59 * *** * *** * * ** ** * * * ** ******** consensus_11990#0 TCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCC 300 consensus_11990#1 TCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGCTCC 119 ******************************************************** *** consensus_11990#0 ACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCAGAGGAAGAA 360 consensus_11990#1 ACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGGGGAGAACTCATTCAGAGGAAGAA 179 ************************************ *********************** consensus_11990#0 CTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGA 420 consensus_11990#1 CTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGA 239 ************************************************************ consensus_11990#0 TTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATT 480 consensus_11990#1 TTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATT 299 ************************************************************ consensus_11990#0 CATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCT 540 consensus_11990#1 CATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCT 359 ************************************************************ consensus_11990#0 TCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTA 600 consensus_11990#1 TCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTA 419 ************************************************************ consensus_11990#0 TTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCATGTGTACT 660 consensus_11990#1 TTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCATGTGTACT 479 ************************************************************ consensus_11990#0 ACTTCCTGGAAGATGTATACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGT 720 consensus_11990#1 ACTTCCTGGAAGATGTACACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGT 539 ***************** ****************************************** consensus_11990#0 TCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCAATGCTGGGC 780 consensus_11990#1 TCATCAAGGCGCTATTTGCTGACGACAATGNTGTTGTGGCAAGGCCACCCAATGCTGGGC 599 ********************** ******* ***************************** consensus_11990#0 TTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTG 840 consensus_11990#1 TTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTG 659 ************************************************************ consensus_11990#0 CCATTCGAAGGCAGTTACTGATTCGAGAGTTCTTTTTTTTTTTTCATCTGTTCAAATTGC 900 consensus_11990#1 CCATTCGAAGGCAGNTACTGATTCGAGAGNTCTTTTTTTT---TCATCTGGTCAAATTGC 716 ************** ************** ********** ******* ********* consensus_11990#0 GAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGT 960 consensus_11990#1 GAAATTGNACAAGCAATGGTCCCGNGTATTTATACAGGCTATAGATCAGANAATTATTGC 776 ******* ********** ***** ************************* ******** consensus_11990#0 GCATAAGAAAGCATTTAGTAGTATCTGGGG-CAGCTAAATTTCTTAACTGGACACGAAGG 1019 consensus_11990#1 GCATAANAAAGCATTTAGTAGTATCTGGGGGCAGCTNAATTTCTTA-CTGGACCCGAAGG 835 ****** *********************** ***** ********* ****** ****** consensus_11990#0 GTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAG 1079 consensus_11990#1 GNGAAGGAAAGGGTTTACCAGTTTNAACC------------------------------- 864 * ******** ******* ***** **** consensus_11990#0 AAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATGTGGTAGTCT 1139 consensus_11990#1 ------------------------------------------------------------ consensus_11990#0 ATTGGTAACGATAACTGTATCCATCGTTGTGATGTTTGTCCCTGCGATTTATGGTGTCAG 1199 consensus_11990#1 ------------------------------------------------------------ consensus_11990#0 AAATGTTAGAATGTTTTATATACTGTTTGGGTTTGAAGAATATTGGTCGAAGATGACCCT 1259 consensus_11990#1 ------------------------------------------------------------ consensus_11990#0 CGAAAAAAAAAAAAAAAAA 1278 consensus_11990#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||