Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11995 cluster # 11995       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11995#0 length = 1960 sequences # 7  
consensus_11995#1 length = 702 sequences # 1  
consensus_11995#2 length = 469 sequences # 1  

consensusID : consensus_11995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1960
fasta sequence
                              [CAGACCCAGTGCAGGGTTGCAGCGCTTTGCATAGGAATGTCTCGCCTTCCTCCTCCTCCTCCTCTTCTTCTTGCAGCTCATCGAAAGCCACATAGTATAATATTCGCCACCTAAAAGCCCACCACATCCATCCATCTTGCTTGCCACACACCCAACACTCCACACAAGTCAGCTCAGTGACCGCCATGGCTGCTGCTGCCTGAGCTGAGCGAGGAGTACTATATTGCAGCGTCCAGACCAGTCCAGGTCTGCTTGCTCGGCAGAGTGCTTGTTGCGCCAAACAATGAGGCAACCACAGAGCAGAAAGCTCCTGCAGCTGCAGGCTCTTTCTCTGCTGCTCTTCATCATCGCCCTGCACAGCCGCCTCCATGGCTGCTCGGGCCAAGGTGAGGCGGCGGACGGCTCGGCGTCCACGGCGGCGGCTCCAATGGAGGAGAAGGAGAAGAGGGCTCTCTACGCGGCCATCGAGGGATTCGTCGGCAAGGGCTGGAATGGCTCCGCCCTCTATCCTGACCCCTGCGGCTGGTCTCCCATTCAGGGAGTGTCATGTGATCTGTTCAATGGGCTGTGGTACCCAACAGTGATGAGCATTGGCCCAGTTCTTGACAACTCACTGCGGTGCTCTGCTGATGCCAAGTTCAGTCCCCAGCTGTTCGACCTCAAGCGCCTCAAGACCCTCTCCTTCTACAGCTGCTTCCCGGCGACCAACCCGACTCCCATTCCGGCCACCAGCTGGGACAAGCTCGCCGGCAGCCTGGAGACGCTCGAGTTCCGCACCAACCCTGGCCTGACGGGGCCCATACCGGCGTCGCTCGGCCGCCTGTCGAGCCTCCAGTCGCTGGTGTTCGTCGAGAACAACCTCACCGGTGCCGTGCCCGCCGAGCTCGGGTCTCTGGTGCGGCTGCGTCGGCTCGTCCTGTCCGGGAACGGGCTGTCCGGGCAGATCCCGGCGTCACTTGGTGGCCTCAAGGGACTCCTCAAGATGGACCTCAGCAACAACCTGCTGCAGGGTAGCTTGCCGCCGGAGCTCGCCGGGCTCGGGAGCCTGACATTGCTTGACCTCAGGAACAACAGCTTCACCGGCGGTTTGCCGTCCTTCTTGCAAGGCATGGCGTCGCTGCAGGACCTGCTCCTGTCGAACAACCCGCTGGGAGGCAGCCTGGGGCAG-CTCGGGTGGGAGAGGCTGCGCGGCCTCGCGACGCTGGACCTGTCCAACCTCGGCCTCGTCGGAGCCATACCGGAATCCATGGCGGCACTGACCAGGCTGAGGTTCTTGGCGCTCGACCACAACCGGCTCACCGGCGACGTGCCGGCCAGGCTCGCCGAGCTGCCCAACATCGGCGCGCTGTACCTGAACGGGAACAACCTGACGGGGACGCTGCAGTTCTCGCCGGCGTTCTACCAGAGGATGGGGAGGAGGTTCGCGTCGTGGGACAACCCGGGCTTGTGCTACAGCAATGCCGCGGTGGACGCGGCGCACGCGCCGCCGGG-GGTGACGGTGTGCAAGGTGGCCGGCGGCGTGGGGGACGGGAGGAAGCCGGAGGCGAGCTCCAGCCTCATGGCCACCTCGTCTGC-TTCCAACCTCATCAATGGCTTCTGC-TTCTTCTTGTGGATGGTGGCC-ACGTCTCTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAGATGGAACAACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATGGATATAAGGTAAACTGCTCTCCTTGTCTGAAAAAAAAAAA]

[+] EMBL AK065190             [CAGACCCAGTGCAGGGTTGCAGCGCTTTGCATAGGAATGTCTCGCCTTCCTCCTCCTCCTCCTCTTCTTCTTGCAGCTCATCGAAAGCCACATAGTATAATATTCGCCACCTAAAAGCCCACCACATCCATCCATCTTGCTTGCCACACACCCAACACTCCACACAAGTCAGCTCAGTGACCGCCATGGCTGCTGCTGCCTGAGCTGAGCGAGGAGTACTATATTGCAGCGTCCAGACCAGTCCAGGTCTGCTTGCTCGGCAGAGTGCTTGTTGCGCCAAACAATGAGGCAACCACAGAGCAGAAAGCTCCTGCAGCTGCAGGCTCTTTCTCTGCTGCTCTTCATCATCGCCCTGCACAGCCGCCTCCATGGCTGCTCGGGCCAAGGTGAGGCGGCGGACGGCTCGGCGTCCACGGCGGCGGCTCCAATGGAGGAGAAGGAGAAGAGGGCTCTCTACGCGGCCATCGAGGGATTCGTCGGCAAGGGCTGGAATGGCTCCGCCCTCTATCCTGACCCCTGCGGCTGGTCTCCCATTCAGGGAGTGTCATGTGATCTGTTCAATGGGCTGTGGTACCCAACAGTGATGAGCATTGGCCCAGTTCTTGACAACTCACTGCGGTGCTCTGCTGATGCCAAGTTCAGTCCCCAGCTGTTCGACCTCAAGCGCCTCAAGACCCTCTCCTTCTACAGCTGCTTCCCGGCGACCAACCCGACTCCCATTCCGGCCACCAGCTGGGACAAGCTCGCCGGCAGCCTGGAGACGCTCGAGTTCCGCACCAACCCTGGCCTGACGGGGCCCATACCGGCGTCGCTCGGCCGCCTGTCGAGCCTCCAGTCGCTGGTGTTCGTCGAGAACAACCTCACCGGTGCCGTGCCCGCCGAGCTCGGGTCTCTGGTGCGGCTGCGTCGGCTCGTCCTGTCCGGGAACGGGCTGTCCGGGCAGATCCCGGCGTCACTTGGTGGCCTCAAGGGACTCCTCAAGATGGACCTCAGCAACAACCTGCTGCAGGGTAGCTTGCCGCCGGAGCTCGCCGGGCTCGGGAGCCTGACATTGCTTGACCTCAGGAACAACAGCTTCACCGGCGGTTTGCCGTCCTTCTTGCAAGGCATGGCGTCGCTGCAGGACCTGCTCCTGTCGAACAACCCGCTGGGAGGCAGCCTGGGGCAG CTCGGGTGGGAGAGGCTGCGCGGCCTCGCGACGCTGGACCTGTCCAACCTCGGCCTCGTCGGAGCCATACCGGAATCCATGGCGGCACTGACCAGGCTGAGGTTCTTGGCGCTCGACCACAACCGGCTCACCGGCGACGTGCCGGCCAGGCTCGCCGAGCTGCCCAACATCGGCGCGCTGTACCTGAACGGGAACAACCTGACGGGGACGCTGCAGTTCTCGCCGGCGTTCTACCAGAGGATGGGGAGGAGGTTCGCGTCGTGGGACAACCCGGGCTTGTGCTACAGCAATGCCGCGGTGGACGCGGCGCACGCGCCGCCGGG GGTGACGGTGTGCAAGGTGGCCGGCGGCGTGGGGGACGGGAGGAAGCCGGAGGCGAGCTCCAGCCTCATGGCCACCTCGTCTGC TTCCAACCTCATCAATGGCTTCTGC TTCTTCTTGTGGATGGTGGCC ACGTCTCTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAGATGGAACAACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATGGATATAAGGTAAACTGCTC                     ]
[+] EMBL AU174170             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGGGAGGCAGCCTGGGGCAGCCTCGGGTGGGAGAGGCTGCGCGGCCTCGCGACGCTGGACCTGTCCAACCTCGGCCTCGTCGGAGCCATACCGGAATCCATGGCGGCACTGACCAGGCTGAGGTTCTTGGCGCTCGACCACAACCGGCTCACCGGCGACGTGCCGGCCAGGCTCGCCGAGCTGCCCAACATCGGCGCGCTGTACCTGAACGGGAACAACCTGACGGGGACGCTGCAGTTCTCGCCGGCGTTCTACCAGAGGATGGGGAGGAGGTTCGCGTCGTGGGACAACCCGGGCTTGTGCTACAGCAATGCCGCGGTGGACGCGGCGCACGCGCCGCCGGG GGTGACGGTGTGCAAGGTGGCCGGCGGCGTGGGGGACGGGAGGAAGCCGGAGGCGAGCTCCAGCCTCATGGCCACCTCGTCTGC TTCCAACCTCATCAATGGC                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C97097               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCACAACCGGCTCACCGGCGACGTGCCGGCCAGGCTCGCCGAGCTGCCCAACATCGGCGCGCTGTACCTGAACGGGAACAACCTGACGGGGACGCTGCAGTTCTCGCCGGCGTTCTACCAGAGGATGGGGAGGAGGTTCGCGTCGTGGGACAACCCGGGCTTGTGCTACAGCAATGCCGCGGTGGACGC GCGCACG GCCGCNGGGNGGTNACGGTGTGCAAGGTGGCCGGCGGCGTGGGGGACGGGAGGAAGCCGGAGG ANGCTCCAGCCTCATGGCCACCTCGTCTGCTTTCCAACCTCATCAATGGCTTCTGCTTTCTTCTTGTGGATGGTGGCCAACGTCTCTCTTGTAGCCAANGA                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AA753392             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tttgaACA CAA  CCNCGGT GAAGC GC CANGC CC CC GG GGTG C GT TTCAA GT GCC GCCGCNT GGGGACGGGA GAA CCGGA GCGAG TCCA CCTCATGGCCA CTTGT TGC TTCCAACNTCATCAATGGCTTCTG  TTCTTCTTGTGGATGGTGNCC AAGTCTCTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAGATGGAACAACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATGGATATAAGGTAAACTGCTCTCCTTGTCTGAAAAAAAAAAA]
[+] EMBL AU181702             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTGCAAGGTGGCCGGCGGCGTGGGGGACGGGAGGAAGCCGGAGGCGAGCTCCAGCCTCATGGCCACCTCGTCTGC TTCCAACCTCATCAATGGCTTCTGC TTCTTCTTGTGGATGGTGGCC ACGTCTCTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAGATGGAACAACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATGGATATAAGGTAAAaaaa                       ]
[+] EMBL AU174171             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGACGGGAGGAAGCCGGAGGCGAGCTCCAGCCTCATGGCCACCTCGTCTGC TTCCAACCTCATCAATGGCTTCTGC TTCTTCTTGTGGATGGTGGCC ACGTCTCTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAGATGGAACAACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCNCAGTAAACNCTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATGGATATAAGGTAAACTGCTCTCCTTGTCTGAAAAAA     ]
[+] EMBL C22400               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATCTTCAGATAGATGGAACAACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATG                                        ]


>consensus_11995#0 CAGACCCAGTGCAGGGTTGCAGCGCTTTGCATAGGAATGTCTCGCCTTCCTCCTCCTCCT CCTCTTCTTCTTGCAGCTCATCGAAAGCCACATAGTATAATATTCGCCACCTAAAAGCCC ACCACATCCATCCATCTTGCTTGCCACACACCCAACACTCCACACAAGTCAGCTCAGTGA CCGCCATGGCTGCTGCTGCCTGAGCTGAGCGAGGAGTACTATATTGCAGCGTCCAGACCA GTCCAGGTCTGCTTGCTCGGCAGAGTGCTTGTTGCGCCAAACAATGAGGCAACCACAGAG CAGAAAGCTCCTGCAGCTGCAGGCTCTTTCTCTGCTGCTCTTCATCATCGCCCTGCACAG CCGCCTCCATGGCTGCTCGGGCCAAGGTGAGGCGGCGGACGGCTCGGCGTCCACGGCGGC GGCTCCAATGGAGGAGAAGGAGAAGAGGGCTCTCTACGCGGCCATCGAGGGATTCGTCGG CAAGGGCTGGAATGGCTCCGCCCTCTATCCTGACCCCTGCGGCTGGTCTCCCATTCAGGG AGTGTCATGTGATCTGTTCAATGGGCTGTGGTACCCAACAGTGATGAGCATTGGCCCAGT TCTTGACAACTCACTGCGGTGCTCTGCTGATGCCAAGTTCAGTCCCCAGCTGTTCGACCT CAAGCGCCTCAAGACCCTCTCCTTCTACAGCTGCTTCCCGGCGACCAACCCGACTCCCAT TCCGGCCACCAGCTGGGACAAGCTCGCCGGCAGCCTGGAGACGCTCGAGTTCCGCACCAA CCCTGGCCTGACGGGGCCCATACCGGCGTCGCTCGGCCGCCTGTCGAGCCTCCAGTCGCT GGTGTTCGTCGAGAACAACCTCACCGGTGCCGTGCCCGCCGAGCTCGGGTCTCTGGTGCG GCTGCGTCGGCTCGTCCTGTCCGGGAACGGGCTGTCCGGGCAGATCCCGGCGTCACTTGG TGGCCTCAAGGGACTCCTCAAGATGGACCTCAGCAACAACCTGCTGCAGGGTAGCTTGCC GCCGGAGCTCGCCGGGCTCGGGAGCCTGACATTGCTTGACCTCAGGAACAACAGCTTCAC CGGCGGTTTGCCGTCCTTCTTGCAAGGCATGGCGTCGCTGCAGGACCTGCTCCTGTCGAA CAACCCGCTGGGAGGCAGCCTGGGGCAGCTCGGGTGGGAGAGGCTGCGCGGCCTCGCGAC GCTGGACCTGTCCAACCTCGGCCTCGTCGGAGCCATACCGGAATCCATGGCGGCACTGAC CAGGCTGAGGTTCTTGGCGCTCGACCACAACCGGCTCACCGGCGACGTGCCGGCCAGGCT CGCCGAGCTGCCCAACATCGGCGCGCTGTACCTGAACGGGAACAACCTGACGGGGACGCT GCAGTTCTCGCCGGCGTTCTACCAGAGGATGGGGAGGAGGTTCGCGTCGTGGGACAACCC GGGCTTGTGCTACAGCAATGCCGCGGTGGACGCGGCGCACGCGCCGCCGGGGGTGACGGT GTGCAAGGTGGCCGGCGGCGTGGGGGACGGGAGGAAGCCGGAGGCGAGCTCCAGCCTCAT GGCCACCTCGTCTGCTTCCAACCTCATCAATGGCTTCTGCTTCTTCTTGTGGATGGTGGC CACGTCTCTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAGATGGAAC AACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCT GTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCC TGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTT TTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATG GATATAAGGTAAACTGCTCTCCTTGTCTGAAAAAAAAAAA



consensusID : consensus_11995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence
                              [CCTTNNANACAATGNNTCCCGGCGACCAACCCGACTCCCATTCCGGCCACCAGCTGGGACAAGCTCGCCGGCAGCCTGGAGACGCTCGAGTTCCGCACCAACCCTGGCCTGACGGGGCCCATACCGGCGTCGCTCGGCCGCCTGTCGAGCCTCCAGTCGCTGGTGTTCGTCGAGAACAACCTCACCGGTGCCGTGCCCGCCGAGCTCGGGTCTCTGGTGCGGCTGCGTCGGCTCGTCCTGTCCGGGAACGGGCTGTCCGGGCAGATCCCGGCGTCACTTGGTAATGGGCATTTCGCCGAGCAGTGCTGATCATGGACGTCAGCAACAACTCTCTAACCGGGCTCTCTGCCTTCGTCGCTAGGTGGCCTCAAGGGACTCCTCAAGATGGACCTCAGCAACAACCTGCTGAAGGGGTAGCTTGCCGCCGGAGCTCGCCGGGCTCGGGAGCCTGACATTGCTTGANCTCAGGAACAACNGCTTCACCGGNGGTTTGCCGTCCTTCTTGCAAGGCATGGCGTCGCTGCAGGACCTGCTCCTGTCGAACAACCCGCTGGGAGGCAGCCTGGGGCAGCTCGGGTGGGAGAGGCTGCGCGGCCTCGCGACGCTGGACCTGTCCAAACTCGGCCTCGTCGGAGCCATACCGGAATCCATGGCGGCACTGACCAGGCTGAGGTTCTTGGGCGTCGAACACAAACGGGTAAC]

[+] EMBL C96901               [CCTTNNANACAATGNNTCCCGGCGACCAACCCGACTCCCATTCCGGCCACCAGCTGGGACAAGCTCGCCGGCAGCCTGGAGACGCTCGAGTTCCGCACCAACCCTGGCCTGACGGGGCCCATACCGGCGTCGCTCGGCCGCCTGTCGAGCCTCCAGTCGCTGGTGTTCGTCGAGAACAACCTCACCGGTGCCGTGCCCGCCGAGCTCGGGTCTCTGGTGCGGCTGCGTCGGCTCGTCCTGTCCGGGAACGGGCTGTCCGGGCAGATCCCGGCGTCACTTGGTAATGGGCATTTCGCCGAGCAGTGCTGATCATGGACGTCAGCAACAACTCTCTAACCGGGCTCTCTGCCTTCGTCGCTAGGTGGCCTCAAGGGACTCCTCAAGATGGACCTCAGCAACAACCTGCTGAAGGGGTAGCTTGCCGCCGGAGCTCGCCGGGCTCGGGAGCCTGACATTGCTTGANCTCAGGAACAACNGCTTCACCGGNGGTTTGCCGTCCTTCTTGCAAGGCATGGCGTCGCTGCAGGACCTGCTCCTGTCGAACAACCCGCTGGGAGGCAGCCTGGGGCAGCTCGGGTGGGAGAGGCTGCGCGGCCTCGCGACGCTGGACCTGTCCAAACTCGGCCTCGTCGGAGCCATACCGGAATCCATGGCGGCACTGACCAGGCTGAGGTTCTTGGGCGTCGAACACAAACGGGTAAC]


>consensus_11995#1 CCTTNNANACAATGNNTCCCGGCGACCAACCCGACTCCCATTCCGGCCACCAGCTGGGAC AAGCTCGCCGGCAGCCTGGAGACGCTCGAGTTCCGCACCAACCCTGGCCTGACGGGGCCC ATACCGGCGTCGCTCGGCCGCCTGTCGAGCCTCCAGTCGCTGGTGTTCGTCGAGAACAAC CTCACCGGTGCCGTGCCCGCCGAGCTCGGGTCTCTGGTGCGGCTGCGTCGGCTCGTCCTG TCCGGGAACGGGCTGTCCGGGCAGATCCCGGCGTCACTTGGTAATGGGCATTTCGCCGAG CAGTGCTGATCATGGACGTCAGCAACAACTCTCTAACCGGGCTCTCTGCCTTCGTCGCTA GGTGGCCTCAAGGGACTCCTCAAGATGGACCTCAGCAACAACCTGCTGAAGGGGTAGCTT GCCGCCGGAGCTCGCCGGGCTCGGGAGCCTGACATTGCTTGANCTCAGGAACAACNGCTT CACCGGNGGTTTGCCGTCCTTCTTGCAAGGCATGGCGTCGCTGCAGGACCTGCTCCTGTC GAACAACCCGCTGGGAGGCAGCCTGGGGCAGCTCGGGTGGGAGAGGCTGCGCGGCCTCGC GACGCTGGACCTGTCCAAACTCGGCCTCGTCGGAGCCATACCGGAATCCATGGCGGCACT GACCAGGCTGAGGTTCTTGGGCGTCGAACACAAACGGGTAAC



consensusID : consensus_11995#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence
                              [NCCCCCCGGGGGCGTTCCAAGTNCCCNCCGCCTNGGGGACGGAGAACCCGGAAGCGAGTCCANCTTCATGGCCACTTGTNGGTTCCCAAACCTCATCAATGGTTCTGCTTNTTCTTGTGGATGGGGCNANGTNTTTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAGATGGGAACAAACATGAAATGAAGAAACTGATTTNTCTTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATGGATATAAGGTAAACTGCTCTCCTTGTCTGAAAAAAAAAAA]

[+] EMBL AA753968             [NCCCCCCGGGGGCGTTCCAAGTNCCCNCCGCCTNGGGGACGGAGAACCCGGAAGCGAGTCCANCTTCATGGCCACTTGTNGGTTCCCAAACCTCATCAATGGTTCTGCTTNTTCTTGTGGATGGGGCNANGTNTTTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAGATGGGAACAAACATGAAATGAAGAAACTGATTTNTCTTTAGTTTAGCTTGGCTAGTGACTAGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAGTGGATAATGGATATAAGGTAAACTGCTCTCCTTGTCTGAAAAAAAAAAA]


>consensus_11995#2 NCCCCCCGGGGGCGTTCCAAGTNCCCNCCGCCTNGGGGACGGAGAACCCGGAAGCGAGTC CANCTTCATGGCCACTTGTNGGTTCCCAAACCTCATCAATGGTTCTGCTTNTTCTTGTGG ATGGGGCNANGTNTTTCTTGTAGCCAAAGACAGACACCAACTTTCAGAATCTTCAGATAG ATGGGAACAAACATGAAATGAAGAAACTGATTTNTCTTTAGTTTAGCTTGGCTAGTGACT AGTAGTGCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGG AAGAAATCCTGGTGGTCACAGTAAACACTAGTCTGAAACTGTGTAGTGACGAGTACTAGC TTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGTTTAATTACGGGAAG TGGATAATGGATATAAGGTAAACTGCTCTCCTTGTCTGAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11995#0      CAGACCCAGTGCAGGGTTGCAGCGCTTTGCATAGGAATGTCTCGCCTTCCTCCTCCTCCT 60
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CCTCTTCTTCTTGCAGCTCATCGAAAGCCACATAGTATAATATTCGCCACCTAAAAGCCC 120
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      ACCACATCCATCCATCTTGCTTGCCACACACCCAACACTCCACACAAGTCAGCTCAGTGA 180
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CCGCCATGGCTGCTGCTGCCTGAGCTGAGCGAGGAGTACTATATTGCAGCGTCCAGACCA 240
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      GTCCAGGTCTGCTTGCTCGGCAGAGTGCTTGTTGCGCCAAACAATGAGGCAACCACAGAG 300
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CAGAAAGCTCCTGCAGCTGCAGGCTCTTTCTCTGCTGCTCTTCATCATCGCCCTGCACAG 360
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CCGCCTCCATGGCTGCTCGGGCCAAGGTGAGGCGGCGGACGGCTCGGCGTCCACGGCGGC 420
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      GGCTCCAATGGAGGAGAAGGAGAAGAGGGCTCTCTACGCGGCCATCGAGGGATTCGTCGG 480
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CAAGGGCTGGAATGGCTCCGCCCTCTATCCTGACCCCTGCGGCTGGTCTCCCATTCAGGG 540
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      AGTGTCATGTGATCTGTTCAATGGGCTGTGGTACCCAACAGTGATGAGCATTGGCCCAGT 600
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      TCTTGACAACTCACTGCGGTGCTCTGCTGATGCCAAGTTCAGTCCCCAGCTGTTCGACCT 660
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CAAGCGCCTCAAGACCCTCTCCTTCTACAGCTGCTTCCCGGCGACCAACCCGACTCCCAT 720
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      TCCGGCCACCAGCTGGGACAAGCTCGCCGGCAGCCTGGAGACGCTCGAGTTCCGCACCAA 780
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CCCTGGCCTGACGGGGCCCATACCGGCGTCGCTCGGCCGCCTGTCGAGCCTCCAGTCGCT 840
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      GGTGTTCGTCGAGAACAACCTCACCGGTGCCGTGCCCGCCGAGCTCGGGTCTCTGGTGCG 900
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      GCTGCGTCGGCTCGTCCTGTCCGGGAACGGGCTGTCCGGGCAGATCCCGGCGTCACTTGG 960
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      TGGCCTCAAGGGACTCCTCAAGATGGACCTCAGCAACAACCTGCTGCAGGGTAGCTTGCC 1020
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      GCCGGAGCTCGCCGGGCTCGGGAGCCTGACATTGCTTGACCTCAGGAACAACAGCTTCAC 1080
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CGGCGGTTTGCCGTCCTTCTTGCAAGGCATGGCGTCGCTGCAGGACCTGCTCCTGTCGAA 1140
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CAACCCGCTGGGAGGCAGCCTGGGGCAGCTCGGGTGGGAGAGGCTGCGCGGCCTCGCGAC 1200
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      GCTGGACCTGTCCAACCTCGGCCTCGTCGGAGCCATACCGGAATCCATGGCGGCACTGAC 1260
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CAGGCTGAGGTTCTTGGCGCTCGACCACAACCGGCTCACCGGCGACGTGCCGGCCAGGCT 1320
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      CGCCGAGCTGCCCAACATCGGCGCGCTGTACCTGAACGGGAACAACCTGACGGGGACGCT 1380
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      GCAGTTCTCGCCGGCGTTCTACCAGAGGATGGGGAGGAGGTTCGCGTCGTGGGACAACCC 1440
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      ------------------------------------------------------------
                                                                                   

consensus_11995#0      GGGCTTGTGCTACAGCAATGCCGCGGTGGACGCGGCGCACGCGCCGCCGGGGGTGACGGT 1500
consensus_11995#2      ------------------------------------------NCCCCCCGGGG-----GC 13
consensus_11995#1      -----CCTTNNANACAATGNNTCCCGGCGACCAACCCGACTCCCATTCCGGCCACCAGCT 55
                                                                  *   * **         

consensus_11995#0      GTGCAAGGTGGCCGGCGGCGTGGGGGACGGGAGGAAGCCGGAGGCGAGCTCCAGCCTCAT 1560
consensus_11995#2      GTTCCAAGTN-CCCNCCGCCTNGGGGACGGA--GAACCCGGAAGCGAG-TCCANCTTCAT 69
consensus_11995#1      GGGACAAGCTCGCCGGCAGCCTGGAGACGCTC-GAGTTCCGCACCAAC-CCTGGCCTGAC 113
                       *    * *    *         ** ****    **   * *   * *   *   * * * 

consensus_11995#0      GG---CCACCTCGTCTGCTTCCAA-CCTCATCAATGGCTTC---TGCTTCTTCTTGTGGA 1613
consensus_11995#2      GG---CCACTT-GTNGGTTCCCAAACCTCATCAATGG-TTC---TGCTTNTTCTTGTGGA 121
consensus_11995#1      GGGGCCCATACCGGCGTCGCTCGGCCGCCTGTCGAGCCTCCAGTCGCTGGTGTTCGTCGA 173
                       **   ***    *        *   *  *      *  * *    ***  *  * ** **

consensus_11995#0      TGGTGGCCACGTCTCTCTTGTAGCCA--AAGACAGACACCAACTTTCAGAATCTTCAGAT 1671
consensus_11995#2      TGG-GGCNANGTNTTTCTTGTAGCCA--AAGACAGACACCAACTTTCAGAATCTTCAGAT 178
consensus_11995#1      GAACAACCTCACCGGTGCCGTGCCCGCCGAGCTCGGGTCTCTGGTGCGGCTGCGTCGGCT 233
                             *        *   **  **    **   *   *     * * *   * ** * *

consensus_11995#0      AGATGGAAC--AACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCT-TGGCTAGT- 1727
consensus_11995#2      AGATGGGAACAAACATGAAATGAAGAAACTGATTTNTCTTTAGTTTAGCT-TGGCTAGT- 236
consensus_11995#1      CGTCCTGTCCGGGAACGGGCTGTCCGGGCAGATCCCGGCGTCACTTGGTAATGGGCATTT 293
                        *            * *   **      * ***       *   ** *   ***  * * 

consensus_11995#0      -GACTAGTAGTGCTGTTC-------TTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCT-- 1777
consensus_11995#2      -GACTAGTAGTGCTGTTC-------TTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCT-- 286
consensus_11995#1      CGCCGAGCAGTGCTGATCATGGACGTCAGCAACAACTCTCTAACCGGGCTCTCTGCCTTC 353
                        * * ** ******* **       * *       ******     ** * * *  **  

consensus_11995#0      GATGATGGAAAAG---GAAGAAATCCT---GGTGG-TCACAGTAAACACTAGTCTGAAAC 1830
consensus_11995#2      GATGATGGAAAAG---GAAGAAATCCT---GGTGG-TCACAGTAAACACTAGTCTGAAAC 339
consensus_11995#1      GTCGCTAGGTGGCCTCAAGGGACTCCTCAAGATGGACCTCAGCAACAACCTG-CTGAAGG 412
                       *  * * *         * * * ****   * ***  * *** **  **  * *****  

consensus_11995#0      TGTGTAGTGACG--AGTACTAGCTTGGTT---------GTTTTTTTTGGGTGTAATTAGC 1879
consensus_11995#2      TGTGTAGTGACG--AGTACTAGCTTGGTT---------GTTTTTTTTGGGTGTAATTAGC 388
consensus_11995#1      GGTAGCTTGCCGCCGGAGCTCGCCGGGCTCGGGAGCCTGACATTGCTTGANCTCAGGAAC 472
                        **    ** **   *  ** **  ** *         *   **  * *   * *  * *

consensus_11995#0      ATGTTTCTCATGTGATGTTTAA------TTACGGGAAGTGGATAATGGATATAAGGTAAA 1933
consensus_11995#2      ATGTTTCTCATGTGATGTTTAA------TTACGGGAAGTGGATAATGGATATAAGGTAAA 442
consensus_11995#1      AACNGCTTCACCGGNGGTTTGCCGTCCTTCTTGCAAGGCATGGCGTCGCTGCAGGACCTG 532
                       *      ***   *  ****        *   *  * *       * * *  * *     

consensus_11995#0      CTGCTCTCC--TTGTCTGAAAAAAAAAAA------------------------------- 1960
consensus_11995#2      CTGCTCTCC--TTGTCTGAAAAAAAAAAA------------------------------- 469
consensus_11995#1      CTCCTGTCGAACAACCCGCTGGGAGGCAGCCTGGGGCAGCTCGGGTGGGAGAGGCTGCGC 592
                       ** ** **       * *     *   *                                

consensus_11995#0      ------------------------------------------------------------
consensus_11995#2      ------------------------------------------------------------
consensus_11995#1      GGCCTCGCGACGCTGGACCTGTCCAAACTCGGCCTCGTCGGAGCCATACCGGAATCCATG 652
                                                                                   

consensus_11995#0      --------------------------------------------------
consensus_11995#2      --------------------------------------------------
consensus_11995#1      GCGGCACTGACCAGGCTGAGGTTCTTGGGCGTCGAACACAAACGGGTAAC 702
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)