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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1849 fasta sequence
[GTCTCCACCCACCTCACTCCACAGTCCACACCACTGCACCGCACTCTCTCTCTCTCCACCGCCATTAACGGTTACTTATCTCTCTAGTACTCCTACTACTGCTAGTGTGCTAGTGGTAGGAGTAGTCTACCAGGACTAGTACTCCACTCTCCGAGAACCAAACAAATCGACAGGAGGCGGCTGGTGTGCGCATGTGACCCGGATCGATCGACAGCGGTCGCCCGCACCGCATTGCCGCTGCTCCCGTTTAGTCCAGCCGCCGCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTGTTCAGGCTCCGATCCAAGGACTGAAGACTACTGCCAGTTTCAGGGAGGAATTCTACTCAGTGGTAGCTTGTGGTTGTAGCTGGTCTTTTGATGAATCTGTTGGTCTCAAAAACATTGTAGAATAGTATTTGTTGGTTCGTTGAACACAATGGGTTCTTCGCCATCCAAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCGCCATATCAGGCGAGCTATTGATTCAAGAGATGCACTGTCGGCATCACACCTATCATATACTCAGTCCCTCCGTAGTGTGGGTACTGCATTGCGGCGGTATGCAGAGTCTGAGATCTCACCAGAATCATCACTGTCCATTTCAGAAGCAGATAAGTCACCATCACATTCTTCTATGGCTTCTCCATCACCTTCTCGAGCAGTAGAGAGCACTGGCTCCCCAGTACATCGAGGTAGTCAGCTGACTCCTCCCTCAACAAAGATCCATTACATGAAAGCAGCAGGAACAAAACCTTTGACGTTCACTATTGATCCATCTGCTGTTGACTTTGTGGGGCAAGAATCCCCGGTATCTACCTTTGTGCCACCACCACCACCATTGCCCCCTGAATTATGTACCTCGTGGGACTTCTTCGATTCCAATTATACTTCTGGTAGTGCCACCTCAAATAATGAGAATGGAGTGACATTAAATTTTAGTAGATTGAAGGGCCTGAGAGATTCAAGGGAATCTGAAGCAGTCTCGCTGAGAGAAGAAACAACAAACAGGTCTGATCGAATGCACCCAGAGCTTCCTGGTGATAATGCAGCACCTAAGCAAGAAGCCCAAGCAAAGAAAGGTGGGATGAGTAAGCCAAGTGGATCGGTTGAGGTTACAACTGAAGCTACTACTTCTGGGCAAGTTGGAGCAAAGGTGGAGGAAGATGACATGGAAAAAGAATTGTGCACAGAAGCAGAAGACCCTTCAGAGTTCATCACTCATAGAGCAAAAGATTTTGTGTCAAGCATGAAAGACATTGAAACTCGGTTTGTACGTGCCGCAGAAGCTGGGAATGAGGTTTCCAGAATGCTTGAGACAAAGAAGATCAGACTTGATATATGTGCTAAGATTCCAGGTTCTCCAGGCAAGCCACCTACTGCCCGATTTGTGTCCGCACTTCGAGTCTGCTGCAATCGTGAGAATATTCTCAACCAGGAAACTGCACAGAATATCTCAAAAGTTGTCACTTGGAAGCGTTCTGTATCATCTTTGTCCTCATCATCTAAGAGTCCACTTACAGCAGCAATGATTACTGATGATGTGGGTGATAGTAACAGTGATTTTGTTGAGCAATTCGCCATGGTATCTGGAAGCCACTCGTCTACCTTGGATAGGTTACATGCTTGGGAGAGAAAACTACATGATGAAATCAAGGCTAGTGAACATGTTAGAAAGACTTATGATGAGAAATGTAACCTTCTCCGGCGCCAATTTGCACGAGGTCTAAATGCTCAACTGATTGATAAGACCAGAGCTGTTGTGAAGGATCTTCATTCCAGGGTGTCTGTTGCGATCCAGGCTGTTG]
[+] EMBL AK063562 [GTCTCCACCCACCTCACTCCACAGTCCACACCACTGCACCGCACTCTCTCTCTCTCCACCGCCATTAACGGTTACTTATCTCTCTAGTACTCCTACTACTGCTAGTGTGCTAGTGGTAGGAGTAGTCTACCAGGACTAGTACTCCACTCTCCGAGAACCAAACAAATCGACAGGAGGCGGCTGGTGTGCGCATGTGACCCGGATCGATCGACAGCGGTCGCCCGCACCGCATTGCCGCTGCTCCCGTTTAGTCCAGCCGCCGCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTGTTCAGGCTCCGATCCAAGGACTGAAGACTACTGCCAGTTTCAGGGAGGAATTCTACTCAGTGGTAGCTTGTGGTTGTAGCTGGTCTTTTGATGAATCTGTTGGTCTCAAAAACATTGTAGAATAGTATTTGTTGGTTCGTTGAACACAATGGGTTCTTCGCCATCCAAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCGCCATATCAGGCGAGCTATTGATTCAAGAGATGCACTGTCGGCATCACACCTATCATATACTCAGTCCCTCCGTAGTGTGGGTACTGCATTGCGGCGGTATGCAGAGTCTGAGATCTCACCAGAATCATCACTGTCCATTTCAGAAGCAGATAAGTCACCATCACATTCTTCTATGGCTTCTCCATCACCTTCTCGAGCAGTAGAGAGCACTGGCTCCCCAGTACATCGAGGTAGTCAGCTGACTCCTCCCTCAACAAAGATCCATTACATGAAAGCAGCAGGAACAAAACCTTTGACGTTCACTATTGATCCATCTGCTGTTGACTTTGTGGGGCAAGAATCCCCGGTATCTACCTTTGTGCCACCACCACCACCATTGCCCCCTGAATTATGTACCTCGTGGGACTTCTTCGATTCCAATTATACTTCTGGTAGTGCCACCTCAAATAATGAGAATGGAGTGACATTAAATTTTAGTAGATTGAAGGGCCTGAGAGATTCAAGGGAATCTGAAGCAGTCTCGCTGAGAGAAGAAACAACAAACAGGTCTGATCGAATGCACCCAGAGCTTCCTGGTGATAATGCAGCACCTAAGCAAGAAGCCCAAGCAAAGAAAGGTGGGATGAGTAAGCCAAGTGGATCGGTTGAGGTTACAACTGAAGCTACTACTTCTGGGCAAGTTGGAGCAAAGGTGGAGGAAGATGACATGGAAAAAGAATTGTGCACAGAAGCAGAAGACCCTTCAGAGTTCATCACTCATAGAGCAAAAGATTTTGTGTCAAGCATGAAAGACATTGAAACTCGGTTTGTACGTGCCGCAGAAGCTGGGAATGAGGTTTCCAGAATGCTTGAGACAAAGAAGATCAGACTTGATATATGTGCTAAGATTCCAGGTTCTCCAGGCAAGCCACCTACTGCCCGATTTGTGTCCGCACTTCGAGTCTGCTGCAATCGTGAGAATATTCTCAACCAGGAAACTGCACAGAATATCTCAAAAGTTGTCACTTGGAAGCGTTCTGTATCATCTTTGTCCTCATCATCTAAGAGTCCACTTACAGCAGCAATGATTACTGATGATGTGGGTGATAGTAACAGTGATTTTGTTGAGCAATTCGCCATGGTATCTGGAAGCCACTCGTCTACCTTGGATAGGTTACATGCTTGGGAGAGAAAACTACATGATGAAATCAAGGCTAGTGAACATGTTAGAAAGACTTATGATGAGAAATGTAACCTTCTCCGGCGCCAATTTGCACGAGGTCTAAATGCTCAACTGATTGATAAGACCAGAGCTGTTGTGAAGGATCTTCATTCCAGGGTGTCTGTTGCGATCCAGGCTGTTG]
consensusID : consensus_120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[TTTTTTTTTTAGTTTGGTTGATCAATCAATGCAATAATATTCTGTAGTGTAAAGCACATGTTCAAGGGAAAAGGGATACTCGAATCAAGAAGCGGGAAGAAGATGATGACGATATTATGATATTATGATTCGTTTCCTTTTTCCCGCTTTGCATCTTTTGGGTACTGGTGGTGGGGGACAGAGGAAACATGAATCTATAGCTCAAGTTAGAAGGCTATGTGACAAATTTAGTGCCTCTGTCCAAAATTGTGTTATTGGTATAATTTGGATTTCACTAGTTTATTTTGAAGATTGTGCTTTACTTAATGTTCTTTCTACTGTGAGTTATTTCTACTTTTGAAAATTATCTGGAAACCTGACCTTTCTTGTTTGTTGTTTTGATTAGATCTGAGGACTGAAGACTACTGCCAGTTTCAGGGAGGATTTCTACTCANTGGAAGCTTGTGTTGTAGCTGGTCTTTTGATGAATCTATTGGTCTCAAATACATTGTAGAATAGTATTTGTTGGTTCGTTGAACTCAATGGGTTCTTCGCCGTCCAAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCCCCATATCAAGCGAGCTATTGATTCAAGAGATGCACTGTCGGCATCCACCTATCAATACTCAGCCCTCCCTATGGGGGTACTGCATTGGGCCGTAT]
[+] EMBL CA761046 [TTTTTTTTTTAGTTTGGTTGATCAATCAATGCAATAATATTCTGTAGTGTAAAGCACATGTTCAAGGGAAAAGGGATACTCGAATCAAGAAGCGGGAAGAAGATGATGACGATATTATGATATTATGATTCGTTTCCTTTTTCCCGCTTTGCATCTTTTGGGTACTGGTGGTGGGGGACAGAGGAAACATGAATCTATAGCTCAAGTTAGAAGGCTATGTGACAAATTTAGTGCCTCTGTCCAAAATTGTGTTATTGGTATAATTTGGATTTCACTAGTTTATTTTGAAGATTGTGCTTTACTTAATGTTCTTTCTACTGTGAGTTATTTCTACTTTTGAAAATTATCTGGAAACCTGACCTTTCTTGTTTGTTGTTTTGATTAGATCTGAGGACTGAAGACTACTGCCAGTTTCAGGGAGGATTTCTACTCANTGGAAGCTTGTGTTGTAGCTGGTCTTTTGATGAATCTATTGGTCTCAAATACATTGTAGAATAGTATTTGTTGGTTCGTTGAACTCAATGGGTTCTTCGCCGTCCAAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCCCCATATCAAGCGAGCTATTGATTCAAGAGATGCACTGTCGGCATCCACCTATCAATACTCAGCCCTCCCTATGGGGGTACTGCATTGGGCCGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_120#0 ------------------------------------------------------------
consensus_120#1 TTTTTTTTTTAGTTTGGTTGATCAATCAATGCAATAATATTCTGTAGTGTAAAGCACATG 60
consensus_120#0 GTCTCCACCCACCTCACTCCACAGTCCACACCACTGCACCGCACTCTCTCTCTCTC-CAC 59
consensus_120#1 TTCAAGGGAAAAGGGATACTCGAATCAAGAAGCGGGAAGAAGATGATGACGATATTATGA 120
** * * * * ** * * * * * * * * *
consensus_120#0 CGCCATTAACGGTTACTTATCTCTC---TAGTACTCCT--ACTACTGCTAGTGTGC--TA 112
consensus_120#1 TATTATGATTCGTTTCCTTTTTCCCGCTTTGCATCTTTTGGGTACTGGTGGTGGGGGACA 180
** * *** * * * ** * * * * * ***** * *** * *
consensus_120#0 GTGGTAGGAGTAGTCTA---CCAGGACTAGTACTCCACTCTCCGAG---AACCAAACAAA 166
consensus_120#1 GAGGAAACATGAATCTATAGCTCAAGTTAGAAGGCTATGTGACAAATTTAGTGCCTCTGT 240
* ** * * * **** * *** * * * * * * *
consensus_120#0 TCGACAGGAGGCGGCTGGTGTG---CGCATGTGACCCGGATCGATCGACAGCGGTCGCCC 223
consensus_120#1 CCAAAATTGTGTTATTGGTATAATTTGGATTTCACTAGTTTATTTTGAAGATTGTGCTTT 300
* * * * **** * * ** * ** * * * ** **
consensus_120#0 GCACCGCATTGCCGCTGCTCCCGTTTAGTCCAGCCGCCGCC--TCCTCCTCCTCCTCCGC 281
consensus_120#1 ACTTAATGTTCTTTCTACTGTGAGTTATTTCTACTTTTGAAAATTATCTGGAAACCTGAC 360
* ** ** ** *** * * * * * ** * *
consensus_120#0 CGCCGCCGCCTGTT--CAGGCTCCGATCCAAGGACTGAAGACTACTGCCAGTTTCAGGGA 339
consensus_120#1 CTTTCTTGTTTGTTGTTTTGATTAGATCTGAGGACTGAAGACTACTGCCAGTTTCAGGGA 420
* * **** * * **** ******************************
consensus_120#0 GGAATTCTACTCAGTGGTAGCTTGTGGTTGTAGCTGGTCTTTTGATGAATCTGTTGGTCT 399
consensus_120#1 GGATTTCTACTCANTGGAAGCTTGTG-TTGTAGCTGGTCTTTTGATGAATCTATTGGTCT 479
*** ********* *** ******** ************************* *******
consensus_120#0 CAAAAACATTGTAGAATAGTATTTGTTGGTTCGTTGAACACAATGGGTTCTTCGCCATCC 459
consensus_120#1 CAAATACATTGTAGAATAGTATTTGTTGGTTCGTTGAACTCAATGGGTTCTTCGCCGTCC 539
**** ********************************** **************** ***
consensus_120#0 AAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCGCCATATCAGGCGA 519
consensus_120#1 AAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCCCCATATCAAGCGA 599
********************************************** ******** ****
consensus_120#0 GCTATTGATTCAAGAGATGCACTGTCGGCATCACACCTATCATATACTCAGTCCCTCCGT 579
consensus_120#1 GCTATTGATTCAAGAGATGCACTGTCGGCATC-CACCTATCA-ATACTCAG-CCCTCCCT 656
******************************** ********* ******** ****** *
consensus_120#0 AGTGTGGGTACTGCATTGCGGCGGTATGCAGAGTCTGAGATCTCACCAGAATCATCACTG 639
consensus_120#1 A-TGGGGGTACTGCATTG-GGCCGTAT--------------------------------- 681
* ** ************* *** ****
consensus_120#0 TCCATTTCAGAAGCAGATAAGTCACCATCACATTCTTCTATGGCTTCTCCATCACCTTCT 699
consensus_120#1 ------------------------------------------------------------
consensus_120#0 CGAGCAGTAGAGAGCACTGGCTCCCCAGTACATCGAGGTAGTCAGCTGACTCCTCCCTCA 759
consensus_120#1 ------------------------------------------------------------
consensus_120#0 ACAAAGATCCATTACATGAAAGCAGCAGGAACAAAACCTTTGACGTTCACTATTGATCCA 819
consensus_120#1 ------------------------------------------------------------
consensus_120#0 TCTGCTGTTGACTTTGTGGGGCAAGAATCCCCGGTATCTACCTTTGTGCCACCACCACCA 879
consensus_120#1 ------------------------------------------------------------
consensus_120#0 CCATTGCCCCCTGAATTATGTACCTCGTGGGACTTCTTCGATTCCAATTATACTTCTGGT 939
consensus_120#1 ------------------------------------------------------------
consensus_120#0 AGTGCCACCTCAAATAATGAGAATGGAGTGACATTAAATTTTAGTAGATTGAAGGGCCTG 999
consensus_120#1 ------------------------------------------------------------
consensus_120#0 AGAGATTCAAGGGAATCTGAAGCAGTCTCGCTGAGAGAAGAAACAACAAACAGGTCTGAT 1059
consensus_120#1 ------------------------------------------------------------
consensus_120#0 CGAATGCACCCAGAGCTTCCTGGTGATAATGCAGCACCTAAGCAAGAAGCCCAAGCAAAG 1119
consensus_120#1 ------------------------------------------------------------
consensus_120#0 AAAGGTGGGATGAGTAAGCCAAGTGGATCGGTTGAGGTTACAACTGAAGCTACTACTTCT 1179
consensus_120#1 ------------------------------------------------------------
consensus_120#0 GGGCAAGTTGGAGCAAAGGTGGAGGAAGATGACATGGAAAAAGAATTGTGCACAGAAGCA 1239
consensus_120#1 ------------------------------------------------------------
consensus_120#0 GAAGACCCTTCAGAGTTCATCACTCATAGAGCAAAAGATTTTGTGTCAAGCATGAAAGAC 1299
consensus_120#1 ------------------------------------------------------------
consensus_120#0 ATTGAAACTCGGTTTGTACGTGCCGCAGAAGCTGGGAATGAGGTTTCCAGAATGCTTGAG 1359
consensus_120#1 ------------------------------------------------------------
consensus_120#0 ACAAAGAAGATCAGACTTGATATATGTGCTAAGATTCCAGGTTCTCCAGGCAAGCCACCT 1419
consensus_120#1 ------------------------------------------------------------
consensus_120#0 ACTGCCCGATTTGTGTCCGCACTTCGAGTCTGCTGCAATCGTGAGAATATTCTCAACCAG 1479
consensus_120#1 ------------------------------------------------------------
consensus_120#0 GAAACTGCACAGAATATCTCAAAAGTTGTCACTTGGAAGCGTTCTGTATCATCTTTGTCC 1539
consensus_120#1 ------------------------------------------------------------
consensus_120#0 TCATCATCTAAGAGTCCACTTACAGCAGCAATGATTACTGATGATGTGGGTGATAGTAAC 1599
consensus_120#1 ------------------------------------------------------------
consensus_120#0 AGTGATTTTGTTGAGCAATTCGCCATGGTATCTGGAAGCCACTCGTCTACCTTGGATAGG 1659
consensus_120#1 ------------------------------------------------------------
consensus_120#0 TTACATGCTTGGGAGAGAAAACTACATGATGAAATCAAGGCTAGTGAACATGTTAGAAAG 1719
consensus_120#1 ------------------------------------------------------------
consensus_120#0 ACTTATGATGAGAAATGTAACCTTCTCCGGCGCCAATTTGCACGAGGTCTAAATGCTCAA 1779
consensus_120#1 ------------------------------------------------------------
consensus_120#0 CTGATTGATAAGACCAGAGCTGTTGTGAAGGATCTTCATTCCAGGGTGTCTGTTGCGATC 1839
consensus_120#1 ------------------------------------------------------------
consensus_120#0 CAGGCTGTTG 1849
consensus_120#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||