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Oryza sativa
cluster # 12004 cluster # 12004       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12004#0 length = 1015 sequences # 5  
consensus_12004#1 length = 625 sequences # 1  
consensus_12004#2 length = 523 sequences # 2  
consensus_12004#3 length = 348 sequences # 1  

consensusID : consensus_12004#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1015
fasta sequence
                              [CCCTTTCTCTCGCGGCTCGTTTGGTTGGGGGAATTTTCCAAGGATCCCGTTTCCGTTTCGAGGTGCCCATGGCGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGAGACTTCCACTCTACGGAGTTCCTTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTCTCCCGAAGCTTTCCATCTCCACCGGTGGAATGGGTATGAATCCGTTTGGTGTTGGTGCTAAAGTTTCAATAAAATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAAATCAAACTGAGGAATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAAAAATCCATGATTTTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTCTAGGATACATTTTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGC-TCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCTCCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAAAA]

[+] EMBL AK070483             [CCCTTTCTCTCGCGGCTCGTTTGGTTGGGGGAATTTTCCAAGGATCCCGTTTCCGTTTCGAGGTGCCCATGGCGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGAGACTTCCACTCTACGGAGTTCCTTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTCTCCCGAAGCTTTCCATCTCCACCGGTGGAATGGGTATGAATCCGTTTGGTGTTGGTGCTAAAGTTTCAATAAAATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAAATCAAACTGAGGAATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAAAAATCCATGATTTTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTCTAGGATACATTTTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGC TCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCTCCAAGAGCATAAATAAAGGATAT                  ]
[+] EMBL AK059742             [                                        AGGATCCCGTTTCCGTTTCGAGGTGCCCATGGCGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGAGACTTCCACTCTACGGAGTTCCTTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTCTCCCGAAGCTTTCCATCTCCACCGGTGGAATGGGTATGAATCCGTTTGGTGTTGGTGCTAAAGTTTCAATAAAATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAAATCAAACTGAGGAATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAAAAATCCATGATTTTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTCTAGGATACATTTTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGC TCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCTCCAAGAGCATAAATAAAGG                      ]
[+] EMBL CF318923             [                                                GTTTCCGTTTCGAGGTGCCCATGGCGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGAGACTTCCACTCTACGGAGTTCCTTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTCTCCCGAAGCTTTCCATCTCCACCGGTGGAATGGGTATGAATCCGTTTGGTGTTGGTGCTAAAGTTTCAATAAAATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAAATCAAACTGAGGAATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAAAAATCCATGATTTTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTCTAGGATACATTTTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGC TCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTA                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF329084             [                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGC TCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCTCCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAA  ]
[-] EMBL CF318924             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGCTTCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTGCGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCTCCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAAAA]


>consensus_12004#0 CCCTTTCTCTCGCGGCTCGTTTGGTTGGGGGAATTTTCCAAGGATCCCGTTTCCGTTTCG AGGTGCCCATGGCGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGA GACTTCCACTCTACGGAGTTCCTTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTC TCCCGAAGCTTTCCATCTCCACCGGTGGAATGGGTATGAATCCGTTTGGTGTTGGTGCTA AAGTTTCAATAAAATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAA ATCAAACTGAGGAATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAA AAATCCATGATTTTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTC TAGGATACATTTTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCA CCACGCTCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCA TATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCT ACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGG CTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGG CAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGG ATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTA TCATCCCATTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGT GAAGCTTTTTGAACAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCT CTTTTTTTTTCCCTCCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAAAA



consensusID : consensus_12004#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [TGGACTGAAGGAGTAGAAAAATTTTCCAAGGATCCCGTTTCCGTTTCGAGGTGCCCATGGCGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGAGACTTCCACTCTACGGAGTTCCCTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTCTCCCGAAGCTTTCCATCTCCACCGGTGGAATGGGTATGGATCCGTTTGGTGTTGGTGCTAAAGTTTCAATAAAATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAAATCAAACTGAGGAATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAAAAATCCATGATTTTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTCTAGGATACATTTTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGCTCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTA]

[+] EMBL CF329083             [TGGACTGAAGGAGTAGAAAAATTTTCCAAGGATCCCGTTTCCGTTTCGAGGTGCCCATGGCGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGAGACTTCCACTCTACGGAGTTCCCTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTCTCCCGAAGCTTTCCATCTCCACCGGTGGAATGGGTATGGATCCGTTTGGTGTTGGTGCTAAAGTTTCAATAAAATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAAATCAAACTGAGGAATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAAAAATCCATGATTTTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTCTAGGATACATTTTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGCTCTTTCTTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTA]


>consensus_12004#1 TGGACTGAAGGAGTAGAAAAATTTTCCAAGGATCCCGTTTCCGTTTCGAGGTGCCCATGG CGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGAGACTTCCACTCT ACGGAGTTCCCTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTCTCCCGAAGCTTT CCATCTCCACCGGTGGAATGGGTATGGATCCGTTTGGTGTTGGTGCTAAAGTTTCAATAA AATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAAATCAAACTGAGG AATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAAAAATCCATGATT TTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTCTAGGATACATTT TTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGCTCTTTC TTGGTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGG GCCAAGCAGCAATTTCTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAA ATAGAATCCTCCCCTGGGCCTTCTA



consensusID : consensus_12004#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 523
fasta sequence
                              [CTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTTATTACCTTCCCGTTCTTATGTAGCGTAACATCTTAGTTGCACTGATCTTTATTTTGTTTGTGCAGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCTCCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAAAAA]

[+] EMBL CF196037             [CTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTTATTACCTTCCCGTTCTTATGTAGCGTAACATCTTAGTTGCACTGATCTTTATTTTGTTTGTGCAGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGTATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCTCCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAAAAA]
[+] EMBL CF195919             [CTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTTATTACCTTCCCGTTCTTATGTAGCGTAACATCTTAGTTGCACTGATCTTTATTTTGTTTGTGCAGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGTATATTCNNTNATCTTACATTCTCTGTNNNNNNTGGTTGTTGTNNNGTGAAGnnnnnngnn                                                                                                       ]


>consensus_12004#2 CTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTTATTACCTTCC CGTTCTTATGTAGCGTAACATCTTAGTTGCACTGATCTTTATTTTGTTTGTGCAGACAAA TAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGC TTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATC ATCATAGAGCAGGATCCAGGCATTTTCTTAGTGATTAACGCGACAGGATGATTTGGCCTT TGTGCCTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATTTGT ATATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAA CAAATAATTCTGCAGGATGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCC TCCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAAAAA



consensusID : consensus_12004#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence
                              [TTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTNATTACCTTCCCGTTCTTATGTAGCGTAACATCTTNNNTGCACTGATCTTTATTTTGTTTGTGCNNNCNAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCANNATCCNNNCATTTTCNNNNNGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGNNNNNATAACAGNNNNNNNAGTTATCAN]

[+] EMBL CF195910             [TTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTNATTACCTTCCCGTTCTTATGTAGCGTAACATCTTNNNTGCACTGATCTTTATTTTGTTTGTGCNNNCNAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATCATAGAGCANNATCCNNNCATTTTCNNNNNGATTAACGCGACAGGATGATTTGGCCTTTGTGCCTTTTAATGCTTTGTCTGNNNNNATAACAGNNNNNNNAGTTATCAN]


>consensus_12004#3 TTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTNATTACCTTCCCGT TCTTATGTAGCGTAACATCTTNNNTGCACTGATCTTTATTTTGTTTGTGCNNNCNAATAG AATCCTCCCCTGGGCCTTCTATGCATCTCTGAGCACTGCCATGGCTTGTTTCTACGCTTA TGTGCTGCTCTCCGGAGGAAATCCACCACCTAAGAAGAAGATGGCAGCAACTCCATCATC ATAGAGCANNATCCNNNCATTTTCNNNNNGATTAACGCGACAGGATGATTTGGCCTTTGT GCCTTTTAATGCTTTGTCTGNNNNNATAACAGNNNNNNNAGTTATCAN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12004#2      ------------------------------------------------------------
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      CCCTTTCTCTCGCGGCTCGTTTGGTTGGGGGAATTTTCCAAGGATCCCGTTTCCGTTTCG 60
consensus_12004#1      ------------------------------------------------------------
                                                                                   

consensus_12004#2      ------------------------------------------------------------
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      AGGTGCCCATGGCGCTGGCGGCGCAGCTCTACGGATCGGCGGCGGCGGCCGCGTACCGGA 120
consensus_12004#1      ------------------------------------------------------------
                                                                                   

consensus_12004#2      ------------------------------------------------------------
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      GACTTCCACTCTACGGAGTTCCTTCGTCATGCCGGTGGCCGCGGACTCCTCTCGCCGCTC 180
consensus_12004#1      ------------------------------------------------------------
                                                                                   

consensus_12004#2      ------------------------------------------------------------
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      TCCCGAAGCTTTCCATCTCCACCGGTGGAATGGGTATGAATCCGTTTGGTGTTGGTGCTA 240
consensus_12004#1      ------------------------------------------------------------
                                                                                   

consensus_12004#2      ------------------------------------------------------------
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      AAGTTTCAATAAAATGTACAAATGGGACCACTCAGGTTGATGAGTTAAACTTCAGATCAA 300
consensus_12004#1      ------------------------------------------------------------
                                                                                   

consensus_12004#2      ------------------------------------------------------------
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      ATCAAACTGAGGAATTAGTAGAAGGAGATGCAGATACTGTTACCCAGAAGAGGAGTGCAA 360
consensus_12004#1      ------------------------------------------------------------
                                                                                   

consensus_12004#2      ------------------------------------------------------------
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      AAATCCATGATTTTTGCCTTGGGATCCCTTTTGGTGGTCTTCTATTCTGTATGGGGCTTC 420
consensus_12004#1      ------------------------------------------------------------
                                                                                   

consensus_12004#2      ------------------------------------------------------------
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      TAGGATACATTTTTTCAAGAAGTACCATAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCA 480
consensus_12004#1      --------------------------------------------TGGACTGAAGGAGTAG 16
                                                                                   

consensus_12004#2      --CTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTTATT-ACCT 57
consensus_12004#3      -----TTCTAGCATGGAAGTATTCCCATGCCTACATCTTGGTAACCACCGTNATT-ACCT 54
consensus_12004#0      CCACGCTCTTTCTTG---GTACCCTCAGTCTTAAATTCTGGAGGAGTGGAAAATCCAGTT 537
consensus_12004#1      AAAAATTTTCCAAGGATCCCGTTTCCGTTTCGAGGTGCCCATGGCGCTGGCGGCGCAGCT 76
                             * *     *          *      *  *                    *  *

consensus_12004#2      TCCCGTT-------CTTATGTAGCGTAACA----TCTTAGTTGCACTGATCT-------T 99
consensus_12004#3      TCCCGTT-------CTTATGTAGCGTAACA----TCTTNNNTGCACTGATCT-------T 96
consensus_12004#0      TCATATTTAT----CTTGGGCCAAGCAGCAA---TTTCTGCTGTTCTAGCATGGAAGTAT 590
consensus_12004#1      CTACGGATCGGCGGCGGCGGCCGCGTACCGGAGACTTCCACTCTACGGAGTTCCCTCG-T 135
                                     *    *    * * *       *    *   *     *       *

consensus_12004#2      TATTTTGTTTGT-GCA--GACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAG 156
consensus_12004#3      TATTTTGTTTGT-GCN--NNCNAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAG 153
consensus_12004#0      TCCCATGCCTAC-ATCTTGACAAATAGAATCCTCCCCTGGGCCTTCTATGCATCTCTGAG 649
consensus_12004#1      CATGCCGGTGGCCGCGGACTCCTCTCGCCGCTCTCCCGAAGCTTTCCATCTCCACCGGTG 195
                             *             *   * *   *   ***   ** *** **      * * *

consensus_12004#2      CACTGC-CATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCA------- 208
consensus_12004#3      CACTGC-CATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCA------- 205
consensus_12004#0      CACTGC-CATGGCTTGTTTCTACGCTTATGTGCTGCTCTCCGGAGGAAATCCA------- 701
consensus_12004#1      GAATGGGTATGGATCCGTTTGGTGTTGGTGCTAAAGTTTCAATAAAATGTACAAATGGGA 255
                        * **   **** *   **    * *  **      * **   *  *  * **       

consensus_12004#2      CCACCTAAGAAGAAGA--------TGGCAGCAACTCCATC------ATCA-TAGAGCAGG 253
consensus_12004#3      CCACCTAAGAAGAAGA--------TGGCAGCAACTCCATC------ATCA-TAGAGCANN 250
consensus_12004#0      CCACCTAAGAAGAAGA--------TGGCAGCAACTCCATC------ATCA-TAGAGCAGG 746
consensus_12004#1      CCACTCAGGTTGATGAGTTAAACTTCAGATCAAATCAAACTGAGGAATTAGTAGAAGGAG 315
                       ****  * *  ** **        *   * *** ** * *      ** * ****     

consensus_12004#2      ATCCAGGCATTTT---CTTAGTGATTAACGCGACAGG--ATGATTTGGCCTTTGTG---C 305
consensus_12004#3      ATCCNNNCATTTT---CNNNNNGATTAACGCGACAGG--ATGATTTGGCCTTTGTG---C 302
consensus_12004#0      ATCCAGGCATTTT---CTTAGTGATTAACGCGACAGG--ATGATTTGGCCTTTGTG---C 798
consensus_12004#1      ATGCAGATACTGTTACCCAGAAGAGGAGTGCAAAAATCCATGATTTTTGCCTTGGGATCC 375
                       ** *    * * *   *     **  *  ** * *    *******   * *** *   *

consensus_12004#2      CTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATT---TGTAT 362
consensus_12004#3      CTTTTAATGCTTTGTCTGNNNNNATAACAGNNNNNNNAGTTATCAN-------------- 348
consensus_12004#0      CTTTTAATGCTTTGTCTGCAAGTATAACAGAATTTTGAGTTATCATCCCATT---TGTAT 855
consensus_12004#1      CTTTTGGTGGTCTTCTATTCTGTATGGGGCTTCTAGGATACATTTTTTCAAGAAGTACCA 435
                       *****  ** * *          **            *   **                 

consensus_12004#2      ATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACA 422
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      ATTCCCTAATCTTACATTCTCTGTGGATTTTGGTTGTTGTAGCGTGAAGCTTTTTGAACA 915
consensus_12004#1      TAAGCCTTGTTTTAGGTGTTGCACCAGGGCTCACCACGCTCTTTCTTGGTACCCTCAGTC 495
                                                                                   

consensus_12004#2      AATAATTCTGCAGGA-TGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCT 481
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      AATAATTCTGCAGGA-TGGCAATCCATCCTTACTGAACATTTTGCTCTTTTTTTTTCCCT 974
consensus_12004#1      TTAAATTCTGGAGGAGTGGAAAATCCAGTTTCATATTTATCTTGGGCCAAGCAGCAATTT 555
                                                                                   

consensus_12004#2      CCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAAAAA------------------ 523
consensus_12004#3      ------------------------------------------------------------
consensus_12004#0      CCAAGAGCATAAATAAAGGATATGTGTTTATTTAAAAAAAA------------------- 1015
consensus_12004#1      CTGCTGTTCTAGCATGGAAGTATTCCCATGCCTACATCTTGACAAATAGAATCCTCCCCT 615
                                                                                   

consensus_12004#2      ----------
consensus_12004#3      ----------
consensus_12004#0      ----------
consensus_12004#1      GGGCCTTCTA 625
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)