cluster # 12013

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Oryza sativa
cluster # 12013 cluster # 12013 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12013#0 length = 1508 sequences # 7

consensus_12013#1 length = 637 sequences # 1
consensus_12013#2 length = 619 sequences # 1

consensusID : consensus_12013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1508
fasta sequence

                              [TTGGGGAAAAAAAAAAATAAAAAATTCGAACCAAACCTATCCAAAATCCCCATCTCGCCACCATCTGCAAACTCGCCGCCGGCCACCCCGCCGTCGACGAACCCCACCCAAACCTCGCCGGGGAACCAGTCCAAGCTCCGTCCAACCATGCGGAAGAACTTCCGCAAGCGGAACCTCGAGGCGGACGCCGCCGCCGACCACTCCGACGACGACGACGCCCGCCGCGTCGCCCTGGAGGAGATCAAGTACATGCAGAAGCTCCGGGAGAGGAAGCTGGGCATCCCCGCCGCCGCCGCCGCAGCGGGCGCGTCGTCAGCGGCTTCTGCCGACGGGGCCTCCCCCCGCGGAAGAGGCGGCGGCGGAGGTGGGTTAGCGGCCGGAGGGGATGCCGAGAAGGAGGACCTCGTCCTCCAGGACACCTTCGCGCAGGAGACCGCCGTCACCATCGAGGATCCCAACATGCTGAGGTATGTGGAGAACGAGCTGTTGAAGAAGAGGGGCAAGAAGGTTGATGTGAAGGACAAGGAGGAGAAAGACCAGGTCGATGAGCTCTACACTGTGCCAGACCACCTCAAGGTTAGGAAGAAGAACTCGGAAGAGAGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTT-CCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGG-AATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGC-GTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTGGCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCA-TTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCAATATTGTTCTGTACTGAGCAGCAATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTGCCAATGATCTCAGATATGCCTTTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATTTCTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAA--ATTTCCTGGATATAAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGTTGATGT-TGCCCTTCTGAAACAAGGAA-AAGCTGTCAGTAAAGAAGTTGTTAATTTCTGCTCAAAAAAAAAA]

[+] EMBL AK066002             [TTGGGGAAAAAAAAAAATAAAAAATTCGAACCAAACCTATCCAAAATCCCCATCTCGCCACCATCTGCAAACTCGCCGCCGGCCACCCCGCCGTCGACGAACCCCACCCAAACCTCGCCGGGGAACCAGTCCAAGCTCCGTCCAACCATGCGGAAGAACTTCCGCAAGCGGAACCTCGAGGCGGACGCCGCCGCCGACCACTCCGACGACGACGACGCCCGCCGCGTCGCCCTGGAGGAGATCAAGTACATGCAGAAGCTCCGGGAGAGGAAGCTGGGCATCCCCGCCGCCGTCGCCGCAGCGGGCGCGTCGTCAGCGGCTTCTGCCGACGGGGCCTCCCCCCGCGGAAGAGGCGGCGGCGGAGGTGGGTTAGCGGCCGGAGGGGATGCCGAGAAGGAGGACCTCGTCCTCCAGGACACCTTCGCGCAGGAGACCGCCGTCACCATCGAGGATCCCAACATGCTGAGGTATGTGGAGAACGAGCTGTTGAAGAAGAGGGGCAAGAAGGTTGATGTGAAGGACAAGGAGGAGAAAGACCAGGTCGATGAGCTCTACACTGTGCCAGACCACCTCAAGGTTAGGAAGAAGAACTCGGGAGAGAGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTT CCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGG AATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGC GTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTGGCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCA TTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCAATATTGTTCTGTACTGAGCAGCAATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTGCCAATGATCTCAGATATGCCTTTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATTTCTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAA  ATTTCCTGGATATAAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGTTGATGT TGCCCTTCTGAAACAAGGAA AAGCTGTCAGTAAAGAAGTTGTTA                    ]
[+] EMBL AK104845             [                                    CTATCCAAAATCCCCATCTCGCCACCATCTGCAAACTCGCCGCCGGCCACCCCGCCGTCGACGAACCCCACCCAAACCTCGCCGGGGAACCAGTCCAAGCTCCGTCCAACCATGCGGAAGAACTTCCGCAAGCGGAACCTCGAGGCGGACGCCGCCGCCGACCACTCCGACGACGACGACGCCCGCCGCGTCGCCCTGGAGGAGATCAAGTACATGCAGAAGCTCCGGGAGAGGAAGCTGGGCATCCCCGCCGCCGCCGCCGCAGCGGGCGCGTCGTCAGCGGCTTCTGCCGACGGGGCCTCCCCCCGCGGAAGAGGCGGCGGCGGAGGTGGGTTAGCGGCCGGAGGGGATGCCGAGAAGGAGGACCTCGTCCTCCAGGACACCTTCGCGCAGGAGACCGCCGTCACCATCGAGGATCCCAACATGCTGAGGTATGTGGAGAACGAGCTGTTGAAGAAGAGGGGCAAGAAGGTTGATGTGAAGGACAAGGAGGAGAAAGACCAGGTCGATGAGCTCTACACTGTGCCAGACCACCTCAAGGTTAGGAAGAAGAACTCGGAAGAGAGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTT CCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGG AATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGC GTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTGGCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCA TTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCAATATTGTTCTGTACTGAGCAGCAATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTGCCAATGATCTCAGATATGCCTTTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATTTCTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAA  ATTTCCTGGATATAAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGTTGATGT TGCCCTTCTGAAACAAGGAA AAGCTGTCAGTAAAGAAGT                         ]
[+] EMBL OSS4990A             [                                       TCCAAAATCCCCATCTCGCCACCATCTGCAAACTCGCCGCCGGCCACCCCGCCGTCGACGAACCCCACCCAAACCTCGCCGGGGAACCANTCCAAGCTCCGTCCAACCATGCGGAAGAACTTCCGCAAGCGGAACCTCGAGGCGGACG CGCCGCCGACCACTCCGACGACGACGACGCCCGCNGCGTCGCCCTGGAGGAGATCAAGTACATGCAGAAGCTCCGGGAGAGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK099328             [                                                                                  CCACCCCGCCGTCGACGAACCCCACCCAAACCTCGCCGGGGAACCAGTCCAAGCTCCGTCCAACCATGCGGAAGAACTTCCGCAAGCGGAACCTCGAGGCGGACGCCGCCGCCGACCACTCCGACGACGACGACGCCCGCCGCGTCGCCCTGGAGGAGATCAAGTACATGCAGAAGCTCCGGGAGAGGAAGCTGGGCATCCCCGCCGCCGCCGCCGCAGCGGGCGCGTCGTCAGCGGCTTCTGCCGACGGGGCCTCCCCCCGCGGAAGAGGCGGCGGCGGAGGTGGGTTAGCGGCCGGAGGGGATGCCGAGAAGGAGGACCTCGTCCTCCAGGACACCTTCGCGCAGGAGACCGCCGTCACCATCGAGGATCCCAACATGCTGAGGTATGTGGAGAACGAGCTGTTGAAGAAGAGGGGCAAGAAGGTTGATGTGAAGGACAAGGAGGAGAAAGACCAGGTCGATGAGCTCTACACTGTGCCAGACCACCTCAAGGTTAGGAAGAAGAACTCGGAAGAGAGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTT CCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGG AATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGC GTGTCAGTGTGACCACATGATGGCCCTATATACATCGGTTGATTTTGGCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCA TTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCAATATTGTTCTGTACTGAGCAGCAATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTGCCAATGATTTCAGATATGCCTTTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATTTCTGCTGCTTACACCACCCCCTTGCGGCTTGCACCTTATTACTGAAAATATTTCCTGGATATAAGCAAGCACTGGCCATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGTTGATGTGTGCCCTTCTGAAACAAGGAA AAGCTGTCAGTAAAGAAGTTGTTAA                   ]
[+] EMBL CB000840             [                                                                                                                                                                                                                                                                                                                                                                                                                ACCTCGTCCTCCAGGACACCTTCGCGCAGGAGACCGCCGTCACCATCGAGGATCCCAACATGCTGAGGTATGTGGAGAACGAGCTGTTGAAGAAGAGGGGCAAGAAGGTTGATGTGAAGGACAAGGAGGAGAAAGACCAGGTCGATGAGCTCTACACTGTGCCAGACCACCTCAAGGTTAGGAAGAAGAACTCGGAAGAGAGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTTCCCGC AGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGGAAATAGGATGCT ACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF327590             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       gagtagaaaATGAGCTCTACACTGTGCCAGACCACCTCAAGGTTAGGAAGAAGAACTCGGAAGAGAGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTT CCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGG AATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGC GTGTCAGTGTGACCACATGATGGCCCTCTATACATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI812963             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCAAGCGGTGTCAGTGTGACCACATGAT GCCCTCTATACATCGGTTGATTTTGGCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCACTTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCCATATTGTTCTGTACTGAGCAGC ATCCAGGATCTC TTTCTCTCTTTTCTTTAAAACT CTGGTTCAACCATGGATAAATTGCCAATGATCTCAGATATGCCTTTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATTTCTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAA  ATTTCCTGGATATAAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGTTGATGT TGCCCTTCTGAAACAAGGAAGGAGCTGTCAGTAAAGAAGTTGTTAATTTCTGCTCAAAAAAAAAA]




>consensus_12013#0
TTGGGGAAAAAAAAAAATAAAAAATTCGAACCAAACCTATCCAAAATCCCCATCTCGCCA
CCATCTGCAAACTCGCCGCCGGCCACCCCGCCGTCGACGAACCCCACCCAAACCTCGCCG
GGGAACCAGTCCAAGCTCCGTCCAACCATGCGGAAGAACTTCCGCAAGCGGAACCTCGAG
GCGGACGCCGCCGCCGACCACTCCGACGACGACGACGCCCGCCGCGTCGCCCTGGAGGAG
ATCAAGTACATGCAGAAGCTCCGGGAGAGGAAGCTGGGCATCCCCGCCGCCGCCGCCGCA
GCGGGCGCGTCGTCAGCGGCTTCTGCCGACGGGGCCTCCCCCCGCGGAAGAGGCGGCGGC
GGAGGTGGGTTAGCGGCCGGAGGGGATGCCGAGAAGGAGGACCTCGTCCTCCAGGACACC
TTCGCGCAGGAGACCGCCGTCACCATCGAGGATCCCAACATGCTGAGGTATGTGGAGAAC
GAGCTGTTGAAGAAGAGGGGCAAGAAGGTTGATGTGAAGGACAAGGAGGAGAAAGACCAG
GTCGATGAGCTCTACACTGTGCCAGACCACCTCAAGGTTAGGAAGAAGAACTCGGAAGAG
AGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTA
AGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGT
AAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGA
AAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCA
CAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCA
GGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAAA
TTCCGTGTCATGCGCAGATAACATGAAATGGAATAGGATGCTAACTTATGCTATTTCCTT
TAAAGGGCAAGCGTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTGG
CTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCAT
TTGGGAAAATTGGACAGGTCTTCATGAAACTGATCAATATTGTTCTGTACTGAGCAGCAA
TCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTGCC
AATGATCTCAGATATGCCTTTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATT
TCTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAAATTTCCTGGATAT
AAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGTTG
ATGTTGCCCTTCTGAAACAAGGAAAAGCTGTCAGTAAAGAAGTTGTTAATTTCTGCTCAA
AAAAAAAA

consensusID : consensus_12013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [GAGACAAGGGGGATGGTTCTGGTGCAGGCCGGAGAAAACCTGCTACTGATGAGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGGAATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGCGTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTGGCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCATTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCAATATTGTTCTGTACTGAGCAGCAATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTGCCAATGATCTTAGATATGCCATTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATTTTTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAAATTTCCTGGATATAAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGTTGATGTTGCCCTTTTGAAACAAGGAAAAGCTGTCAGTAAAGAAGTTGTTAATTTCTGCTCAAAAAAAAAAAAA]

[-] EMBL CA762512             [GAGACAAGGGGGATGGTTCTGGTGCAGGCCGGAGAAAACCTGCTACTGATGAGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGGAATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGCGTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTGGCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCATTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCAATATTGTTCTGTACTGAGCAGCAATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTGCCAATGATCTTAGATATGCCATTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATTTTTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAAATTTCCTGGATATAAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGTTGATGTTGCCCTTTTGAAACAAGGAAAAGCTGTCAGTAAAGAAGTTGTTAATTTCTGCTCAAAAAAAAAAAAA]




>consensus_12013#1
GAGACAAGGGGGATGGTTCTGGTGCAGGCCGGAGAAAACCTGCTACTGATGAGTTGTTGC
TTGAGCGTTTCCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGGAAT
AGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGCGTGTCAGTGTGACCACATGATG
GCCCTCTATACATCGGTTGATTTTGGCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATC
ATGTTATAGGCGTATCTTCGAAGCATTTGGGAAAATTGGACAGGTCTTCATGAAACTGAT
CAATATTGTTCTGTACTGAGCAGCAATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACT
GCTGGTTCAACCATGGATAAATTGCCAATGATCTTAGATATGCCATTCCATCCCGATCCT
GAGGCTTACCTTCCATGCTTATCATTTTTGCTGCTTACACAACCACCTTGCGGCTTGCAC
CTTATTACTGAAAATTTCCTGGATATAAGCAAGCACTGGCAATGTACCTTATGTTATATT
TTCATCAGAAACACTCAGCTTTGTTGATGTTGCCCTTTTGAAACAAGGAAAAGCTGTCAG
TAAAGAAGTTGTTAATTTCTGCTCAAAAAAAAAAAAA

consensusID : consensus_12013#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [GTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATCGAACCTTATCATTTAGAGGAAGAAGAACTCGGAAGAGAGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGGAATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGCGTGTCAGTGTGACCACATGATGGNCCTCTATACATCGGTTGATTTTTGGCTTTTGCTTCTAAAGCCAGGGTCCATGGCTCA]

[+] EMBL CA766530             [GTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATCGAACCTTATCATTTAGAGGAAGAAGAACTCGGAAGAGAGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGGAATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGCGTGTCAGTGTGACCACATGATGGNCCTCTATACATCGGTTGATTTTTGGCTTTTGCTTCTAAAGCCAGGGTCCATGGCTCA]




>consensus_12013#2
GTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCCCCGACGTCGCGAG
AAGTCCATCGAACCTTATCATTTAGAGGAAGAAGAACTCGGAAGAGAGCTCAACGCAGTG
GACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTAAGAAACATTGAAGA
GACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGTAAAACAAAATCAGA
TGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGAAAAGATTACACCGA
AAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCACAGGCTAATGGAAC
TGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGAGAAGC
TGCTACTGATGAGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAAATTCCGTGTCATGCG
CAGATAACATGAAATGGAATAGGATGCTAACTTATGCTATTTCCTTTAAAGGGCAAGCGT
GTCAGTGTGACCACATGATGGNCCTCTATACATCGGTTGATTTTTGGCTTTTGCTTCTAA
AGCCAGGGTCCATGGCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12013#0      TTGGGGAAAAAAAAAAATAAAAAATTCGAACCAAACCTATCCAAAATCCCCATCTCGCCA 60
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      CCATCTGCAAACTCGCCGCCGGCCACCCCGCCGTCGACGAACCCCACCCAAACCTCGCCG 120
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      GGGAACCAGTCCAAGCTCCGTCCAACCATGCGGAAGAACTTCCGCAAGCGGAACCTCGAG 180
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      GCGGACGCCGCCGCCGACCACTCCGACGACGACGACGCCCGCCGCGTCGCCCTGGAGGAG 240
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      ATCAAGTACATGCAGAAGCTCCGGGAGAGGAAGCTGGGCATCCCCGCCGCCGCCGCCGCA 300
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      GCGGGCGCGTCGTCAGCGGCTTCTGCCGACGGGGCCTCCCCCCGCGGAAGAGGCGGCGGC 360
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      GGAGGTGGGTTAGCGGCCGGAGGGGATGCCGAGAAGGAGGACCTCGTCCTCCAGGACACC 420
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      TTCGCGCAGGAGACCGCCGTCACCATCGAGGATCCCAACATGCTGAGGTATGTGGAGAAC 480
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      GAGCTGTTGAAGAAGAGGGGCAAGAAGGTTGATGTGAAGGACAAGGAGGAGAAAGACCAG 540
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      GTCGATGAGCTCTACACTGTGCCAGACCACCTCAAGGTTAGGAAGAAGAACTCGGAAGAG 600
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      AGCTCAACGCAGTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAATTA 660
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      AGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGCTACAAGAGAAAAGGCTTGCCGGT 720
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      AAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTCCATCGCGGA 780
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      AAAGATTACACCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAAGATCAAGGTTCA 840
consensus_12013#1      ------------------------------------------------------------
consensus_12013#2      ------------------------------------------------------------
                                                                                   

consensus_12013#0      CAGGCTAATGGAACTGGAGGTAAATCAATGGGTGGTAACCATCCAGATGGTGC-TGGTGC 899
consensus_12013#1      ----------------------------------GAGACAAGGGGGATGGTTC-TGGTGC 25
consensus_12013#2      -------------GTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCC 47
                                                         *   * *    *  *** *   *  *

consensus_12013#0      AGGGCGGAGAGAAGCTGCTACTGATGAGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAA 959
consensus_12013#1      AGGCCGGAGAAAACCTGCTACTGATGAGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAA 85
consensus_12013#2      CCGACGTCGCGAGAAGTCCATCGA-ACCTTATCATTTAGAGGAAGAAGAACTCGGAAGAG 106
                         * **  *  *     * *  **    ** *   **    *     * *  **  * * 

consensus_12013#0      ATTCCGTGTCATGCGCAGATAACATGAAATGGAATAGGATGCTAACTTATGCTATTTCCT 1019
consensus_12013#1      ATTCCGTGTCATGCGCAGATAACATGAAATGGAATAGGATGCTAACTTATGCTATTTCCT 145
consensus_12013#2      AGCTCAACGCA---GTGGACCACTGGCATTGCTGAAGTTCAGCTGCCTATTGAGTACAAA 163
                       *   *    **   *  **  **  * * **    **        * ***    *     

consensus_12013#0      TTAAAGGGCAAGCGTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTG 1079
consensus_12013#1      TTAAAGGGCAAGCGTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTG 205
consensus_12013#2      TTAAGAAACATTGAAGAGACCGAGGCAGCTAAAAAGATGC---TACAAGAGAAAAGGCTT 220
                       ****    **     *  *  * * *  *   *  *       ****   *   *   * 

consensus_12013#0      GCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCA 1139
consensus_12013#1      GCTTTTGCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCA 265
consensus_12013#2      GCCGGTAAAACAAAATCAGATGCTAACATTCCGTCGAGCTATAATGCTGACTTTTTC-CA 279
                       **   *    * *** *   **   *     * **  * ****    *  ***     **

consensus_12013#0      TTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCA-ATATTGTTCTGTACTGAGCAGC 1198
consensus_12013#1      TTTGGGAAAATTGGACAGGTCTTCATGAAACTGATCA-ATATTGTTCTGTACTGAGCAGC 324
consensus_12013#2      TCGCGGAAAAGATTACA-----CCGAAAAGTTGAGAAGAGAGCATCCTGAACTGTACAAA 334
                       *   ******    ***      *   **  ***  * * *   * *** ****  **  

consensus_12013#0      AATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTG 1258
consensus_12013#1      AATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAACCATGGATAAATTG 384
consensus_12013#2      GATCAAGGTTCACAGGCTAA---------TGGAACTGGAGGTAAATCAATGGG-----TG 380
                        *** *** ** *                *  *****  ***  * * ****      **

consensus_12013#0      CCAATGATCTCAGATATGCCTTTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCA 1318
consensus_12013#1      CCAATGATCTTAGATATGCCATTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCA 444
consensus_12013#2      GTAACCATCCAGATGGTGCTGGTGCAGGGCGGAGA-GAAGCTGCTACTGATGAGTTGTTG 439
                         **  ***       ***   * **   **     ** ***     *      ** *  

consensus_12013#0      TTTCTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAAATTTCCTGGAT 1378
consensus_12013#1      TTTTTGCTGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAAATTTCCTGGAT 504
consensus_12013#2      CTTGAGC-GTTTCCGCAAGCG--TGAAAAATTCCGTGTCATG--CGCAGATAACATGAA- 493
                        **  ** * ** * *** *   *      ** *   * **    * * **  * ** * 

consensus_12013#0      ATAAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGT 1438
consensus_12013#1      ATAAGCAAGCACTGGCAATGTACCTTATGTTATATTTTCATCAGAAACACTCAGCTTTGT 564
consensus_12013#2      ------ATGGAATAGGATGCTAACTTATGCTAT--TTCCTTTAAAGGG---CAAGCGTGT 542
                             * * * * * *   ** ****** ***  ** * * * *      **    ***

consensus_12013#0      TGATGTTGCCCTTCTGAAACAAGGAAAAGCTGTCAGTAAAGAAGTTGTTAATTTCTGCTC 1498
consensus_12013#1      TGATGTTGCCCTTTTGAAACAAGGAAAAGCTGTCAGTAAAGAAGTTGTTAATTTCTGCTC 624
consensus_12013#2      CAGTGTGACC------ACATGATGGNCCTCTATACATCGGTTGATTTTTGGCTTTTGCTT 596
                          ***  **      * *  * *     ** *   *       ** **   ** **** 

consensus_12013#0      AAAAAAAAAA------------- 1508
consensus_12013#1      AAAAAAAAAAAAA---------- 637
consensus_12013#2      CTAAAGCCAGGGTCCATGGCTCA 619
                         ***   *