These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 877 fasta sequence [CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG-TTCGAGAAATCGCTG-CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC-AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA-CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA-TCAG-TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCTCTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT] [+] EMBL CF332511 [CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCGGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTG ] [+] EMBL AU062990 [ cnnaatTCCAGACTCCCNCCGNAGCCGCATCGCCAATCANATAGCCGCCGAGGTTNAGGTGAGCCACCGANAGGGGAGANAGAGCNCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGA NTCAANATCGGGGAAGANTTCTTNAAGGCCAAGTGCCTGATGAACTGCNAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATNTNGGACGGGGACCCGTCGTCGCAGGTTTCGCAGGTT TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGCAAGGTn ] [+] EMBL AK121401 [ GACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGGGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCTCTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT] [+] EMBL BF430709 [ CGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCA ] [+] EMBL CA758725 [ CATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAG AAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGGCTTTCTGTTATGTATGATCTCTGGG ] [+] EMBL BI798455 [ GTGTTTCGAGAAATC CTGCCAGTACGTGAA CGGTTCAGCCGGTACAAGAACCCGGACCCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACCTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCC AAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTtaaaaa ] [+] EMBL AU092550 [ GCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTNCCTCCGNTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAa ] [+] EMBL BI794863 [ CAGCGAGAAGATCGAC AGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCCAATCGATCC AAGTTCTGCTGTGTACTCAGCTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTC ATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTAaaaaaa ] [+] EMBL BI800015 [ GATATCAAATCGATCC AAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTaaaaaaaaa ] consensusID : consensus_12016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [GAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTGTTCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA] [+] EMBL C97920 [GAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTGTTCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12016#0 CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGA 60 consensus_12016#1 ------------------------------------------------------------ consensus_12016#0 GGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAAC 120 consensus_12016#1 --------------------------------------------------------GAAC 4 **** consensus_12016#0 GCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAG 180 consensus_12016#1 GCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAG 64 ************************************************************ consensus_12016#0 GTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCG 240 consensus_12016#1 GTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCG 124 ************************************************************ consensus_12016#0 TCGTCGCAGGTGTCGCAGGTGTTCGAGAAATCGCTGCAGTACGTGAAGCGGTTCAGCCGG 300 consensus_12016#1 TCGTCGCAGGTGTCGCAGGTGTTCGAGAA------------------------------- 153 ***************************** consensus_12016#0 TACAAGAACCCGGACGCGGTGAGGCAGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCC 360 consensus_12016#1 ------------------------------------------------------------ consensus_12016#0 GAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCC 420 consensus_12016#1 ------------------------------------------------------------ consensus_12016#0 CTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATC 480 consensus_12016#1 --------------------------------------------------------GATC 157 **** consensus_12016#0 GACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTA 540 consensus_12016#1 GACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTA 217 ************************************************************ consensus_12016#0 TCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAA 600 consensus_12016#1 TCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAA 277 ************************************************************ consensus_12016#0 TCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGAT 660 consensus_12016#1 TCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGAT 337 ************************************************************ consensus_12016#0 CCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAA 720 consensus_12016#1 CCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAA 397 ************************************************************ consensus_12016#0 ACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGA 780 consensus_12016#1 ACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA----------- 446 ********************************************** * consensus_12016#0 GTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCT 840 consensus_12016#1 ------------------------------------------------------------ consensus_12016#0 CTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT 877 consensus_12016#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||