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Oryza sativa
cluster # 12016 cluster # 12016       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12016#0 length = 877 sequences # 9  
consensus_12016#1 length = 446 sequences # 1  

consensusID : consensus_12016#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 877
fasta sequence
                              [CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG-TTCGAGAAATCGCTG-CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC-AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA-CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA-TCAG-TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCTCTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT]

[+] EMBL CF332511             [CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCGGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTG                                                                                                                                                                                                                                                                   ]
[+] EMBL AU062990             [   cnnaatTCCAGACTCCCNCCGNAGCCGCATCGCCAATCANATAGCCGCCGAGGTTNAGGTGAGCCACCGANAGGGGAGANAGAGCNCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGA NTCAANATCGGGGAAGANTTCTTNAAGGCCAAGTGCCTGATGAACTGCNAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATNTNGGACGGGGACCCGTCGTCGCAGGTTTCGCAGGTT TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGCAAGGTn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK121401             [             GACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGGGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCTCTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT]
[+] EMBL BF430709             [                  CGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCA                                                                                                                                                                                      ]
[+] EMBL CA758725             [                                          CATAGCCGCCGAGGTTGAGGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTG TTCGAGAAATCGCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAG AAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGGCTTTCTGTTATGTATGATCTCTGGG                                ]
[+] EMBL BI798455             [                                                                                                                                                                                                                                                                  GTGTTTCGAGAAATC CTGCCAGTACGTGAA CGGTTCAGCCGGTACAAGAACCCGGACCCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACCTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCC AAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTtaaaaa                                                           ]
[+] EMBL AU092550             [                                                                                                                                                                                                                                                                                 GCTG CAGTACGTGAAGCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGC AGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTNCCTCCGNTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAa                                                                                                                    ]
[+] EMBL BI794863             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAGCGAGAAGATCGAC AGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGA CTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCCAATCGATCC AAGTTCTGCTGTGTACTCAGCTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTC ATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTAaaaaaa                                         ]
[+] EMBL BI800015             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GATATCAAATCGATCC AAGTTCTGCTGTGTA TCAG TGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGCGACTTTTGAAAAGAAAAAGGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTaaaaaaaaa                                                         ]


>consensus_12016#0 CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGA GGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAAC GCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAG GTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCG TCGTCGCAGGTGTCGCAGGTGTTCGAGAAATCGCTGCAGTACGTGAAGCGGTTCAGCCGG TACAAGAACCCGGACGCGGTGAGGCAGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCC GAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCC CTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATC GACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTA TCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAA TCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGAT CCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAA ACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGA GTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCT CTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT



consensusID : consensus_12016#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence
                              [GAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTGTTCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA]

[+] EMBL C97920               [GAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCGTCGTCGCAGGTGTCGCAGGTGTTCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA]


>consensus_12016#1 GAACGCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTG CGAGGTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGA CCCGTCGTCGCAGGTGTCGCAGGTGTTCGAGAAGATCGACAAGATGCTCAACGACCTCTC CCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTATCAGATTTGCTGGTGAACTGTCT AATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAATTAGGGCTCATTTGATT TGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTATCAGT GTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTAT CTAGTGACTTTTGAAAAGAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12016#0      CCTCCCGAGTCCAGACTCCGCCCGCAGCCGCATCGCCAACGCCATAGCCGCCGAGGTTGA 60
consensus_12016#1      ------------------------------------------------------------
                                                                                   

consensus_12016#0      GGTGAGCCACCGAGAGGGGAGAGAGAGCGCGCCGAGATGTCCGGCGAGGAGGAGGAGAAC 120
consensus_12016#1      --------------------------------------------------------GAAC 4
                                                                               ****

consensus_12016#0      GCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAG 180
consensus_12016#1      GCGGCGGAGCTCAAGATCGGGGAAGAGTTCTTGAAGGCCAAGTGCCTGATGAACTGCGAG 64
                       ************************************************************

consensus_12016#0      GTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCG 240
consensus_12016#1      GTGGCGATAATCCTGGAGCACAAGTACGAGCAGATCCAGCACATGTCGGACGGGGACCCG 124
                       ************************************************************

consensus_12016#0      TCGTCGCAGGTGTCGCAGGTGTTCGAGAAATCGCTGCAGTACGTGAAGCGGTTCAGCCGG 300
consensus_12016#1      TCGTCGCAGGTGTCGCAGGTGTTCGAGAA------------------------------- 153
                       *****************************                               

consensus_12016#0      TACAAGAACCCGGACGCGGTGAGGCAGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCC 360
consensus_12016#1      ------------------------------------------------------------
                                                                                   

consensus_12016#0      GAGTTCGAGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCC 420
consensus_12016#1      ------------------------------------------------------------
                                                                                   

consensus_12016#0      CTCGTCCCCTCCCTCCGCTCCGGCGGCAGGTTCGTCGGCGACCCCGGCAGCGAGAAGATC 480
consensus_12016#1      --------------------------------------------------------GATC 157
                                                                               ****

consensus_12016#0      GACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTA 540
consensus_12016#1      GACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGTAGGACTGTAGCTTA 217
                       ************************************************************

consensus_12016#0      TCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAA 600
consensus_12016#1      TCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAA 277
                       ************************************************************

consensus_12016#0      TCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGAT 660
consensus_12016#1      TCATAATTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGAT 337
                       ************************************************************

consensus_12016#0      CCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAA 720
consensus_12016#1      CCAAAGTTCTGCTGTGTATCAGTGTATCACCTTCAGGAGGAATGTAGTGAGATCATGAAA 397
                       ************************************************************

consensus_12016#0      ACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAGGAGGTGAATTGGA 780
consensus_12016#1      ACCGAGATTAAGTCAATATCTATCTAGTGACTTTTGAAAAGAAAAAAAA----------- 446
                       **********************************************  *           

consensus_12016#0      GTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGTCTTTCTGTTATGTATGATCT 840
consensus_12016#1      ------------------------------------------------------------
                                                                                   

consensus_12016#0      CTGGGAGTGATGTTCCATTTTACTATCAGTTATTCAT 877
consensus_12016#1      -------------------------------------
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)