cluster # 12020

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Oryza sativa
cluster # 12020 cluster # 12020 Sequences # 10 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12020#0 length = 1484 sequences # 6
consensus_12020#1 length = 802 sequences # 1

consensus_12020#2 length = 457 sequences # 1
consensus_12020#3 length = 412 sequences # 1
consensus_12020#4 length = 402 sequences # 1

consensusID : consensus_12020#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1484
fasta sequence

                              [ACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCGTATGCAGTCTGATATTTCTAGATTAGAAGCCAAGATTGAAAGAATGGATGCTCAATTAGCTGCAAAAGATCGCGAGCTGGCCACATTGACTAGAACGGAGGCCAAAAACACTGCAACTTTGAAGGCTCAGATTGACAAGCTGCAACAGGAACGCGATGAGTTCCAAAAAATGGTTATTGGCAATCAGCAAGTACGTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGGAGAAGTTAAACCAGGTATTAATGGAGAAAAAGAAGGAATCATCACGTTCAGGAATGGAAATAATGAACTTGTTGCAGAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACAATGATTATTACAAAATGATTGTTGATGCCTATGAGGTAAAGAAGCAAGAGTTGATGCAAGAAAATGCTGATTTGCGAGCACTATTGCGTTCGATGCAGATGGATATGCGCGAGTTCCTCAATGCTCCAAATGGAGTTCAACAGCCAGCTGTTGTGGGCAATGGACGACAGGAGGCAGGATCTCCTCAGTCTCCACTTGGTGGCAAGACGGATGTCTTTGATTTGCCCTTTCACATGGCTAGAGACCAGATTGAAGAGAGTTTGCGCACTAAAATGGCTTCCATAAAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCAGAAGCTACCGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAGGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTGTGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCTTTCAAATGTGGAGCTAGTTGTGGCTGTTGACCTCTGGCAAAAAAAAAAAAAAAAAAAACTCG]

[+] EMBL AK103204             [ACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCGTATGCAGTCTGATATTTCTAGATTAGAAGCCAAGATTGAAAGAATGGATGCTCAATTAGCTGCAAAAGATCGCGAGCTGGCCACATTGACTAGAACGGAGGCCAAAAACACTGCAACTTTGAAGGCTCAGATTGACAAGCTGCAACAGGAACGCGATGAGTTCCAAAAAATGGTTATTGGCAATCAGCAAGTACGTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGGAGAAGTTAAACCAGGTATTAATGGAGAAAAAGAAGGAATCATCACGTTCAGGAATGGAAATAATGAACTTGTTGCAGAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACAATGATTATTACAAAATGATTGTTGATGCCTATGAGGTAAAGAAGCAAGAGTTGATGCAAGAAAATGCTGATTTGCGAGCACTATTGCGTTCGATGCAGATGGATATGCGCGAGTTCCTCAATGCTCCAAATGGAGTTCAACAGCCAGCTGTTGTGGGCAATGGACGACAGGAGGCAGGATCTCCTCAGTCTCCACTTGGTGGCAAGACGGATGTCTTTGATTTGCCCTTTCACATGGCTAGAGACCAGATTGAAGAGAGTTTGCGCACTAAAATGGCTTCCATAAAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCAGAAGCTACCGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAGGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTGTGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCTTTCAAATGTGGAGCTAGTTGTGGCTGTT                                  ]
[+] EMBL AK060264             [ACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCGTATGCAGTCTGATATTTCTAGATTAGTAGCCAAGATTGAAAGAATGGATGCTCAATTAGCTGCAAAAGATCGCGAGCTGGCCACATTGACTAGAACGGAGGCCAAAAACACTGCAACTTTGAAGGCTCAGATTGACAAGCTGCAACAGGAACGCGATGAGTTCCAAAAAATGGTTATTGGCAATCAGCAAGTACGTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGGAGAAGTTAAACCAGGTATTAATGGAGAAAAAGAAGGAATCATCACGTTCAGGAATGGAAATAATGAACTTGTTGCAGAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACAATGATTATTACAAAATGATTGTTGATGCCTATGAGGTAAAGAAGCAAGAGTTGATGCAAGAAAATGCTGATTTGCGAGCACTATTGCGTTCGATGCAGATGGATATGCGCGAGTTCCTCAATGCTCCAAATGGAGTTCCACAGCCAGCTGTTGTGGGCAATGGACGACAGGAGGCAGGATCTCCTCAGTCTCCACTTGGTGGCAAGACGGATGTCTTTGATTTGCCCTTTCACATGGCTAGAGACCAGATTGAAGAGAGTTTGCGCACTAAAATGGCTTCCATAAAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCAGAAGCTACCGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAGGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTGTGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAGTGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTA                                                                                  ]
[+] EMBL CB096412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGATTTGCCCTTTCACATGGCTAGAGACCAGATTGAAGAGAGTTTGCGCACTAAAATGGCTTCCATAAAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCAGAAGCTACCGAGCGGGAATTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAGGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGAAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTGTGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGATAGCATGATTTCTAGGCATTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCT                                                              ]
[-] EMBL CF324874             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAAGCTACCGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAGGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTGTGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCTTTCAAATGTGGAGCTAGTTGTGGCTGTTGACCTCTGGCAAAAAAAAAAAAAAAAAAAACTCG]
[+] EMBL OS1107A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACCGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAGGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTGTGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGGAATAGGCATCAATACCTTACTTACAG ATTGTa                                                                        ]
[-] EMBL CF324730             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTGTGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCTTTCAAATGTGGAGCTAGTTGTGGCTGTTGACCTCTGGCAAAAAAAAAAAAAAAAAAAACTCG]




>consensus_12020#0
ACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCA
GGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCA
CCGACCCCGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGC
AGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCGTATGCAGTCTGATA
TTTCTAGATTAGAAGCCAAGATTGAAAGAATGGATGCTCAATTAGCTGCAAAAGATCGCG
AGCTGGCCACATTGACTAGAACGGAGGCCAAAAACACTGCAACTTTGAAGGCTCAGATTG
ACAAGCTGCAACAGGAACGCGATGAGTTCCAAAAAATGGTTATTGGCAATCAGCAAGTAC
GTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGGAGA
AGTTAAACCAGGTATTAATGGAGAAAAAGAAGGAATCATCACGTTCAGGAATGGAAATAA
TGAACTTGTTGCAGAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACA
ATGATTATTACAAAATGATTGTTGATGCCTATGAGGTAAAGAAGCAAGAGTTGATGCAAG
AAAATGCTGATTTGCGAGCACTATTGCGTTCGATGCAGATGGATATGCGCGAGTTCCTCA
ATGCTCCAAATGGAGTTCAACAGCCAGCTGTTGTGGGCAATGGACGACAGGAGGCAGGAT
CTCCTCAGTCTCCACTTGGTGGCAAGACGGATGTCTTTGATTTGCCCTTTCACATGGCTA
GAGACCAGATTGAAGAGAGTTTGCGCACTAAAATGGCTTCCATAAAGGCCCGAATGACAC
AACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCAGAAGCTACCGAGCGGGAACTTG
AACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAGGCATCCCTCATGT
CCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTG
AGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTGTGTCGACCTTCACAGGCTTCAGCT
ATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTAGTAACCACCA
AGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGT
GTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTA
CATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGAA
ATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCTTTCAAATGTGGAGCTAGT
TGTGGCTGTTGACCTCTGGCAAAAAAAAAAAAAAAAAAAACTCG

consensusID : consensus_12020#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 802
fasta sequence

                              [AGGACGAGACAAGAGGGCAATCAGCAAGTACGTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGGAGAAGTTAAACCAGGTATTAATGGAGAAAAAGAAGGAATCATCACGTCCAGGAATGGAAATAATGAACTTGTTGCAGAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACAATGATTATTACAAAATGATTGTTGATGCCTATGAGGTAAAGAAGCAAGAGTTGATGCAAGAAAATGCTGATTTGCGAGCACTATTGCGTTCGATGCAGATGGATATGCGAAAGTTCCTCGATGCTCCAAATGGAGTTCCACAGCCAGCTGTTGTGGGCAATGGACGGCAGGAGGCAGGATCTCCTCAGTCTCCACTTGGTGGCAAGACGGATGTCTTTGATTTGCCCTTTCACATGGCTAGAGACCAGATTGAAGAGAGTTTGCGCACTAAAATGGCTTCCATAAAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCAGAAGCTACCGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAAGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGNTTGTGTCGACCTTCACAGGCTTCAGCTATCCAANGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGNTTAG]

[+] EMBL CB096929             [AGGACGAGACAAGAGGGCAATCAGCAAGTACGTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGGAGAAGTTAAACCAGGTATTAATGGAGAAAAAGAAGGAATCATCACGTCCAGGAATGGAAATAATGAACTTGTTGCAGAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACAATGATTATTACAAAATGATTGTTGATGCCTATGAGGTAAAGAAGCAAGAGTTGATGCAAGAAAATGCTGATTTGCGAGCACTATTGCGTTCGATGCAGATGGATATGCGAAAGTTCCTCGATGCTCCAAATGGAGTTCCACAGCCAGCTGTTGTGGGCAATGGACGGCAGGAGGCAGGATCTCCTCAGTCTCCACTTGGTGGCAAGACGGATGTCTTTGATTTGCCCTTTCACATGGCTAGAGACCAGATTGAAGAGAGTTTGCGCACTAAAATGGCTTCCATAAAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCAGAAGCTACCGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAAGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGNTTGTGTCGACCTTCACAGGCTTCAGCTATCCAANGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGNTTAG]




>consensus_12020#1
AGGACGAGACAAGAGGGCAATCAGCAAGTACGTACCCAGCAAATTCATGAAATGAAGAAA
AAAGAGAAAGAATACATCAAATTGCAGGAGAAGTTAAACCAGGTATTAATGGAGAAAAAG
AAGGAATCATCACGTCCAGGAATGGAAATAATGAACTTGTTGCAGAAAGAAGGACGGCAG
CGTGGAACTTGGAGTGGAAAAAAGAATGACAATGATTATTACAAAATGATTGTTGATGCC
TATGAGGTAAAGAAGCAAGAGTTGATGCAAGAAAATGCTGATTTGCGAGCACTATTGCGT
TCGATGCAGATGGATATGCGAAAGTTCCTCGATGCTCCAAATGGAGTTCCACAGCCAGCT
GTTGTGGGCAATGGACGGCAGGAGGCAGGATCTCCTCAGTCTCCACTTGGTGGCAAGACG
GATGTCTTTGATTTGCCCTTTCACATGGCTAGAGACCAGATTGAAGAGAGTTTGCGCACT
AAAATGGCTTCCATAAAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAA
GTGACATCAGAAGCTACCGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGA
AGCATTATCCAGGAGCAAGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCA
AGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATT
ATGNTTGTGTCGACCTTCACAGGCTTCAGCTATCCAANGCACGTCACGATGCCAACCTTT
CATCGAGGTCTCATGTGNTTAG

consensusID : consensus_12020#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [GTCCTCTTGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCCCCGGAAATTTTCTGGGCCCGGGGGGGACCCATTTTTTAAAAAGCCCCCCCCCCCGGGGGGAACCCCCACCCCCCCTAAAGGGGGGTT]

[+] EMBL CB684451             [GTCCTCTTGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCAATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCCCCGGAAATTTTCTGGGCCCGGGGGGGACCCATTTTTTAAAAAGCCCCCCCCCCCGGGGGGAACCCCCACCCCCCCTAAAGGGGGGTT]




>consensus_12020#2
GTCCTCTTGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGT
AGCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTT
GCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGAT
CAATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATT
CCCTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAGGGCCCCCCCGGAAATTTTCTGGGCCCGGGGGGGACCCATTTTTTAAAAAGCCCCCCC
CCCCGGGGGGAACCCCCACCCCCCCTAAAGGGGGGTT

consensusID : consensus_12020#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence

                              [AAACAACGACCGCACCGTGGAACTTGGACTGGAAAAAACAATGACATGATTATTACAAAATGATTGTTGATGCCTATGACGTACACAACCAACACTTGATCAACAAAATGCTGATTTGCGACACTATTGCGTTCGATGCAACTGGATCTGCGCATTCCTCAATGCTCCAATGGAGTCCACAGNCACTGTTGTGGGCAATGGACACACGAGCACGATCTCTCATCTCACTTGGTGGCCAAACGATTCTTGAATTGCCCTTCCTGCTAAAACACATCAAATTGCCCTAAATGTTCCTAAGGCCAATACACTCCAATCCCAAGGTCCAATTACTCAACCCACGGACTTACTAAATCACTTTAACTAACTTCCACGGTCTCTTCCACCTTCAATCTATACCCGAGTTNTTGCTGAT]

[+] EMBL AA754191             [AAACAACGACCGCACCGTGGAACTTGGACTGGAAAAAACAATGACATGATTATTACAAAATGATTGTTGATGCCTATGACGTACACAACCAACACTTGATCAACAAAATGCTGATTTGCGACACTATTGCGTTCGATGCAACTGGATCTGCGCATTCCTCAATGCTCCAATGGAGTCCACAGNCACTGTTGTGGGCAATGGACACACGAGCACGATCTCTCATCTCACTTGGTGGCCAAACGATTCTTGAATTGCCCTTCCTGCTAAAACACATCAAATTGCCCTAAATGTTCCTAAGGCCAATACACTCCAATCCCAAGGTCCAATTACTCAACCCACGGACTTACTAAATCACTTTAACTAACTTCCACGGTCTCTTCCACCTTCAATCTATACCCGAGTTNTTGCTGAT]




>consensus_12020#3
AAACAACGACCGCACCGTGGAACTTGGACTGGAAAAAACAATGACATGATTATTACAAAA
TGATTGTTGATGCCTATGACGTACACAACCAACACTTGATCAACAAAATGCTGATTTGCG
ACACTATTGCGTTCGATGCAACTGGATCTGCGCATTCCTCAATGCTCCAATGGAGTCCAC
AGNCACTGTTGTGGGCAATGGACACACGAGCACGATCTCTCATCTCACTTGGTGGCCAAA
CGATTCTTGAATTGCCCTTCCTGCTAAAACACATCAAATTGCCCTAAATGTTCCTAAGGC
CAATACACTCCAATCCCAAGGTCCAATTACTCAACCCACGGACTTACTAAATCACTTTAA
CTAACTTCCACGGTCTCTTCCACCTTCAATCTATACCCGAGTTNTTGCTGAT

consensusID : consensus_12020#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [TGTGAAATTGATGTTNGNTGGTGCGACCGTGCACAGGCTGTGCAGGCTNATGCACAAGGCACNTGCACNGATGCCCAACCTTTTCATGCGAGGTGCTGCATGTGGTGTTATGTGAACCTNCCATAGCTTGCCTGCCTGGGGGTGAAACCCTGTGTGGTGTGGCCATGGGGTGAGCATGGACTGTGCTAGGCGTGTCTGCTGTGTTAGTATTATGTGCAGGAGCATCNCCTCCGCGGTTGCTAACTGCCNGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCATGTAGCTATTATGCCTACGNTAATAGGCATCAATACCNNNTACTGACAGAATTGTTATTCCCTTCNTTCAAATGGGGAGCTAGTTGTGGCTGTTGACCTGCT]

[+] EMBL BI807189             [TGTGAAATTGATGTTNGNTGGTGCGACCGTGCACAGGCTGTGCAGGCTNATGCACAAGGCACNTGCACNGATGCCCAACCTTTTCATGCGAGGTGCTGCATGTGGTGTTATGTGAACCTNCCATAGCTTGCCTGCCTGGGGGTGAAACCCTGTGTGGTGTGGCCATGGGGTGAGCATGGACTGTGCTAGGCGTGTCTGCTGTGTTAGTATTATGTGCAGGAGCATCNCCTCCGCGGTTGCTAACTGCCNGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCATGTAGCTATTATGCCTACGNTAATAGGCATCAATACCNNNTACTGACAGAATTGTTATTCCCTTCNTTCAAATGGGGAGCTAGTTGTGGCTGTTGACCTGCT]




>consensus_12020#4
TGTGAAATTGATGTTNGNTGGTGCGACCGTGCACAGGCTGTGCAGGCTNATGCACAAGGC
ACNTGCACNGATGCCCAACCTTTTCATGCGAGGTGCTGCATGTGGTGTTATGTGAACCTN
CCATAGCTTGCCTGCCTGGGGGTGAAACCCTGTGTGGTGTGGCCATGGGGTGAGCATGGA
CTGTGCTAGGCGTGTCTGCTGTGTTAGTATTATGTGCAGGAGCATCNCCTCCGCGGTTGC
TAACTGCCNGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATCA
TGTAGCTATTATGCCTACGNTAATAGGCATCAATACCNNNTACTGACAGAATTGTTATTC
CCTTCNTTCAAATGGGGAGCTAGTTGTGGCTGTTGACCTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      ACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCA 60
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      GGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCA 120
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      CCGACCCCGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGC 180
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      AGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCGTATGCAGTCTGATA 240
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      TTTCTAGATTAGAAGCCAAGATTGAAAGAATGGATGCTCAATTAGCTGCAAAAGATCGCG 300
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      AGCTGGCCACATTGACTAGAACGGAGGCCAAAAACACTGCAACTTTGAAGGCTCAGATTG 360
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      -----------------------------AGGACGAGACAAGAGGGCAATCAGCAAGTAC 31
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      ACAAGCTGCAACAGGAACGCGATGAGTTCCAAAAAATGGTTATTGGCAATCAGCAAGTAC 420
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      GTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGGAGA 91
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      GTACCCAGCAAATTCATGAAATGAAGAAAAAAGAGAAAGAATACATCAAATTGCAGGAGA 480
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      -------------------------------------------------TGTGAAATTGA 11
                                                                                   

consensus_12020#1      AGTTAAACCAGGTATTAATGGAGAAAAAGAAGGAATCATCACGTCCAGGAATGGAAATAA 151
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      AGTTAAACCAGGTATTAATGGAGAAAAAGAAGGAATCATCACGTTCAGGAATGGAAATAA 540
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      TGTTNGNTGGTGCGACCGTGCACAGGCTGTGCAGGCTNATGCACAAGGCACNTGCACNGA 71
                                                                                   

consensus_12020#1      TGAACTTGTTGCAGAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACA 211
consensus_12020#3      --------------AAACAACGACCGCACCGTGGAACTTGGACTGGAAAAAACAATGACA 46
consensus_12020#0      TGAACTTGTTGCAGAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACA 600
consensus_12020#2      -------------------------GTCCTCTTGTGTTTAGTAA--CCACCA-AGCTT-C 31
consensus_12020#4      TGCCCAACCTTTTCATGCGAGGTGCTGCATGTGGTGTTATGTGAACCTNCCATAGCTTGC 131
                                                      * *   *  *          * *      

consensus_12020#1      ATGATTATTA-CAAAATGAT---TGTTGATGCCTATGAGGT--AAAGAAGCAAGAGTTGA 265
consensus_12020#3      -TGATTATTA-CAAAATGAT---TGTTGATGCCTATGACGT--ACACAACCAACACTTGA 99
consensus_12020#0      ATGATTATTA-CAAAATGAT---TGTTGATGCCTATGAGGT--AAAGAAGCAAGAGTTGA 654
consensus_12020#2      CTCCTTGGT----AAACC-----TGTTGTTGCC-ATGGT---AGCATGACTT---CTAGG 75
consensus_12020#4      CTGCCTGGGGGTGAAACCCTGTGTGGTGTGGCC-ATGGGGTGAGCATGGACTGTGCTAGG 190
                        *   *       ***       ** **  *** ***        *          * * 

consensus_12020#1      TGCAAGA-AAATGCTGAT-TTGCGAGCACTATTGCGTTCGATGCAGATGG-ATATGCGAA 322
consensus_12020#3      T-CAACA-AAATGCTGAT-TTGCGA-CACTATTGCGTTCGATGCAACTGG-ATCTGCGCA 154
consensus_12020#0      TGCAAGA-AAATGCTGAT-TTGCGAGCACTATTGCGTTCGATGCAGATGG-ATATGCGCG 711
consensus_12020#2      CGT-TCT-CTGTGT-AGTATTATGTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTG 132
consensus_12020#4      CGTGTCTGCTGTGTTAGTATTATGTGCAGGAGCATCNCCTCCGCGGTTGCTAACTGCCNG 250
                                  **    * **  *  **  *       *   **   **  *  ***   

consensus_12020#1      AGTTCCTCGATGCTCCAAATGGAGTTCCACAGCCAGCTGTTGTGGGCAATGGACGGCAGG 382
consensus_12020#3      --TTCCTCAATGCTCCAA-TGGAGT-CCACAGNCA-CTGTTGTGGGCAATGGACA-CACG 208
consensus_12020#0      AGTTCCTCAATGCTCCAAATGGAGTTCAACAGCCAGCTGTTGTGGGCAATGGACGACAGG 771
consensus_12020#2      --CCTCTGACTGTTACAT---GTATCGCACTTCTA-CTGTTAGGGAGAACAGATCAATGT 186
consensus_12020#4      --CCTCTGACTGTTACAT---GTATCGCACTTCTA-CTGTTAGGGAGAACAGATCA-TGT 303
                            **   ** * **    *  *   **    * *****  **  **  **       

consensus_12020#1      AGGCAGGATCTCCTCAGTCTCCACTTGGTGGCAAGACGGAT--GTCTTTGATTTGC---- 436
consensus_12020#3      AG-CACGATCTCTC--ATCTC-ACTTGGTGGCCAAACGA-----TTCTTGAATTGC---- 255
consensus_12020#0      AGGCAGGATCTCCTCAGTCTCCACTTGGTGGCAAGACGGAT--GTCTTTGATTTGC---- 825
consensus_12020#2      AGCTATTATGGCCT---ACGA-AATAGGCATCAATACCTTA--CTTACAGAATTGTTATT 240
consensus_12020#4      AGCTATTATG-CCT---ACGNTAATAGGCATCAATACCNNNTACTGACAGAATTGTTATT 359
                       **  *  **  *      *   * * **   * * **       *    ** ***     

consensus_12020#1      CCTTTCACATGGCTAGAGACCAGATTGAA-----GAGAGTTTGCGCACTAAAATGGCTTC 491
consensus_12020#3      CCTTCCTGCTAAA-ACACATCAAATTGCCC---TAAATGTTCCTAAGGCCAATACACTCC 311
consensus_12020#0      CCTTTCACATGGCTAGAGACCAGATTGAA-----GAGAGTTTGCGCACTAAAATGGCTTC 880
consensus_12020#2      CCCTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 300
consensus_12020#4      CCCTTCNTTCAAATGGGGAGCTAGTTGTGGCTGTTGACCTGCT----------------- 402
                       ** * *            *                                         

consensus_12020#1      CATA--AAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCA 549
consensus_12020#3      AATCCCAAGGTCC-AATTACTCAACCCACGGACTTACTAAATCACTTT-AACTAACTTCC 369
consensus_12020#0      CATA--AAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCA 938
consensus_12020#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 360
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      GAAGCTAC--CGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTA 607
consensus_12020#3      ACGGTCTCTTCCACCTTCAATCTATACCCGAGTTNTTGCTGAT----------------- 412
consensus_12020#0      GAAGCTAC--CGAGCGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTA 996
consensus_12020#2      AAGGGCCCCCCCGGAAATTTTCTGGGCCCGGGGGGGACCCATTTTTTAAAAAGCCCCCCC 420
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      TCCAGGAGCAAGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGT 667
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      TCCAGGAGCAGGCATCCCTCATGTCCAAGCACTTTACGAAGTCTGATAAACCAAGGAGGT 1056
consensus_12020#2      CCCCGGGGGGAACCCCCACCCCCCCTAAAGGGGGGTT----------------------- 457
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      TGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGNTTG 727
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      TGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTATGTTTG 1116
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      TGTCGACCTTCACAGGCTTCAGCTATCCAANGCACGTCACGATGCCAACCTTTCATCGAG 787
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      TGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAG 1176
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      GTCTCATGTGNTTAG--------------------------------------------- 802
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      GTCTCATGTGTTTAGTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTA 1236
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      GCATGACTTCTAGGCGTTCTCTGTGTAGTATTATGTGCAGGAGCATCTCCTCCGCTGTTG 1296
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      CTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAACAGATC 1356
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      AATGTAGCTATTATGGCCTACGAAATAGGCATCAATACCTTACTTACAGAATTGTTATTC 1416
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      ------------------------------------------------------------
consensus_12020#3      ------------------------------------------------------------
consensus_12020#0      CCTTCTTTCAAATGTGGAGCTAGTTGTGGCTGTTGACCTCTGGCAAAAAAAAAAAAAAAA 1476
consensus_12020#2      ------------------------------------------------------------
consensus_12020#4      ------------------------------------------------------------
                                                                                   

consensus_12020#1      --------
consensus_12020#3      --------
consensus_12020#0      AAAACTCG 1484
consensus_12020#2      --------
consensus_12020#4      --------