cluster # 12030

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Oryza sativa
cluster # 12030 cluster # 12030 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12030#0 length = 1830 sequences # 8

consensus_12030#1 length = 805 sequences # 1
consensus_12030#2 length = 777 sequences # 1

consensusID : consensus_12030#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1830
fasta sequence

                              [TTCTACAGCGGCGTTCCACTCGGGTTGGTCTCTCCCCCGAGGCACGGCCGCCGCCGCCGCCGCCGCCGCGCTCGGTCTAATCGGAATCTATTTCTCGACGCGACTCCGCTTCCCCGGCTCCCCTCTCACCCTTCCGCGGCGCCGCCGCCGCCGCTTGTAGCGGTTGGGGGGCGAGCGGCCGCTCGAGAGCGAAGCGATGCTGGAGAAAGACAGGATAGCCTACTTCTACGATGGCGATGTGGGCAATGTCTACTTTGGGCCAAATCACCCGATGAAACCACATCGACTTTGTATGACACATCATCTTGTGCTTTCATATGATCTTCACAAGAAGATGGAGATATATAGGCCCCACAAAGCATATCCAACAGAGCTCGCACAGTTCCATTCTGCTGATTATGTGGAATTCTTGCATCGGATAACTCCTGACACCCAACACCTGTATGAAAATGAATTACGTAGATACAATCTTGGAGAAGACTGCCCAGTCTTTGATAATCTGTTTGAGTTTTGCCAAATATATGCTGGAGGAACTCTAGATGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGGTAATGACTGTAAGTTTCCACAAGTATGGTGATTTTTTCTTCCCTGGCACAGGT-GATATTAAGGATATAGGAGAAAGAGAAGGAAAATATTATGCCATTAACATTCCACTTAAAGATGGGATAGATGACTCCGGCTTTACTCGCCTTTTTAAAACAGTTATTGCCAAAGTTGTTGAGACATATCTGCCAGATGCTATTGTTCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCCATTGAAGGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCCCTCTACTGGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGGTGTTCTTCTAGATACGGAGCTCCCAAATGAAATTCCAGACAATGAATACATCAAATACTTTGCTCCAGATTATACATTGAAAGTATCGAATGTGAACATGGACAACTTGAATAGCAAGTCATATCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCATACAACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGATATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAGATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTGGTGCTGTTGCGCGGTTTAACAGCGTTAGGTGGGAAATACTGTCAATTGACTTGTTAGGATCTAACACCTTTGCCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTAGTTGCATGCAGAGATTGCAAATTCTTAGTCGGTGGTAATGATTCATAGTTTTTGGCTGCACACATTTTTCCTATCTTTTTTTGTTTAAACCCGGCGTATGTGGTTATCAGGTTGGACCTACTCTCAACGTCCTTAAAAAGAAATAAACTTCTATAATTTGGATAAAAAAAAAAAAAA]

[+] EMBL AK066667             [TTCTACAGCGGCGTTCCACTCGGGTTGGTCTCTCCCCCGAGGCACG      GCCGCCGCCGCCGCCGCGCTCGGTCTAATCGGAATCTATTTCTCGACGCGACTCCGCTTCCCCGGCTCCCCTCTCACCCTTCCGCGCCGCCGCCGCCGCCGCTTGTAGTGGTTGGGGGGCGAGCGGCCGCTCGAGAGCGAAGCGATGCTGGAGAAAGACAGGATAGCCTACTTCTACGATGGCGATGTGGGCAATGTCTACTTTGGGCCAAATCACCCGATGAAACCACATCGACTTTGTATGACACATCATCTTGTGCTTTCATATGATCTTCACAAGAAGATGGAGATATATAGGCCCCACAAAGCATATCCAACAGAGCTCGCACAGTTCCATTCTGCTGATTATGTGGAATTCTTGCATCGGATAACTCCTGACACCCAACACCTGTATGAAAATGAATTACGTAGATACAATCTTGGAGAAGACTGCCCAGTCTTTGATAATCTGTTTGAGTTTTGCCAAATATATGCTGGAGGAACTCTAGATGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGGTAATGACTGTAAGTTTCCACAAGTATGGTGATTTTTTCTTCCCTGGCACAGGT GATATTAAGGATATAGGAGAAAGAGAAGGAAAATATTATGCCATTAACATTCCACTTAAAGATGGGATAGATGACTCCGGCTTTACTCGCCTTTTTAAAACAGTTATTGCCAAAGTTGTTGAGACATATCTGCCAGATGCTATTGTTCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCCATTGAAGGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCCCTCTACTGGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGGTGTTCTTCTAGATACGGAGCTCCCAAATGAAATTCCAGACAATGAATACATCAAATACTTTGCTCCAGATTATACATTGAAAGTATCGAATGTGAACATGGACAACTTGAATAGCAAGTCATATCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCATACAACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGATATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAGATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTGGTGCTGTTGCGCGGTTTAACAGCGTTAGGTGGGAAATACTGTCAATTGACTTGTTAGGATCTAACACCTTTGCCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTAGTTGCATGCAGAGATTGCAAATTCTTAGTCGGTGGTAATGATTCATAGT                                                                                                                                ]
[+] EMBL CB622453             [                  CTCGGGTTGGTCTCTCCCCCGAGGCACGGCCGCCGCCGCCGCCGCCGCCGCGCTCGGTCTAATCGGAATCTATTTCTCGACGCGACTCCGCTTCCCCGGCTCCCCTCTCACCCTTCCGCGGCGCCGCCGCCGCCGCTTGTAGCGGTTGGGGGGCGAGCGGCCGCTCGAGAGCGAAGCGATGCTGGAGAAAGACAGGATAGCCTACTTCTACGATGGCGATGTGGGCAATGTCTACTTTGGGCCAAATCACCCGATGAAACCACATCGACTTTGTATGACACATCATCTTGTGCTTTCATATGATCTTCACAAGAAGATGGAGATATATAGGCCCCACAAAGCATATCCAACAGAGCTCGCACAGTTCCATTCTGCTGATTATGTGGAATTCTTGCATCGGATAACTCCTGACACCCAACACCTGTATGAAAATGAATTACGTAGATACAATCTTGGAGAAGACTGCCCAGTCTTTGATAATCTGTTTGAGTTTTGCCAAATATATGCTGGAGGAACTCTAGATGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAACGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGGTAATGACTGTAAGTTTCCACAAGTATGGTGATTTTTTCTTCCCTGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB617786             [                  CTCGCCTTGGACTCTCCCCCGAGGCACGGCCGCCGCCGCCGCCGCCGCCGCGCTCGGTCTAATCGGAATCTATTTCTCGACGCGACTCCGCTTCCCCGGCTCCCCTCTCACCCTTCCGCGGCGCCGCCGCCGCCGCTTGTAGCGGTTGGGGGGCGAGCGGCCGCTCGAGAGCGAAGCGATGCTGGAGAAAGACAGGATAGCCTACTTCTACGATGGCGATGTGGGCAATGTCTACTTTGGGCCAAATCACCCGATGAAACCACATCGACTTTGTATGACACATCATCTTGTGCTTTCATATGATCTTCACAAGAAGATGGAGATATATAGGCCCCACAAAGCATATCCAACAGAGCTCGCACAGTTCCATTCTGCTGATTATGTGGAATTCTTGCATCGGATAACTCCTGACACCCAACACCTGTATGAAAATGAATTACGTAGATACAATCTTGGAGAAGACTGCCCAGTCTTTGATAATCTGTTTGAGTTTTGCCAAATATATGCTGGAGGAACTCTAGATGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAACGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGGGATGGAGTTGAAGAAACCTTTTATTTCACTGACAGGGgta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU181050             [                                                                                                                                                                                                                           CTACTTCTACGATGGCGATGTGGGCAATGTCTACTTTGGGCCAAATCACCCGATGAAACCACATCGACTTTGTATGACACATCATCTTGTGCTTTCATATGATCTTCACAAGAAGATGGAGATATATAGGCCCCACAAAGCATATCCAACAGAGCTCGCACAGTTCCATTCTGCTGATTATGTGGAATTCTTGCATCGGATAACTCCTGACACCCAACACCTGTATGAAAATGAATTACGTAGATACAATCTTGGAGAAGACTGCCCAGTCTTTGATAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL C25941               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGATACAATCTTGGAGAAGACTGCCCAGTCTTTGATAATCTGTTTGAGTTTTGCCAAATATATGCTGGAGGAACTCTAGATGCGGCTCGCAGATTGANTCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGGTAATGACTGNAAGTTTCCACAAGTATGGTGATTTTTTCTTCCCTGGCACAGGTGGATATTAAGGGTATAGGAGAAAGAG AGGGAAATATTATGCCNTTAACATc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB622454             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGTTATTGCCAAAGTTGTTGAGACATATCTGCCAGGTGCTATTGTTCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCCATTGAAGGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCCCTCTACTGGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGGTGTTCTTCTAGATACGGAGCTCCCAAATGAAATTCCAGACAATGAATACATCAAATACTTTGCTCCAGATTATACATTGAAAGTATCGAATGTGAACATGGACAACTTGAATAGCAAGTCATATCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCATACAACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGATATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAGATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTGGTGCTGTTGCGCGGTTTAACAGCGTTAGGTGGGAAATACTGTCAATTGACTTGTTAGGATCTAACACCTTTGCCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATAAGTTACATATGCTACTTGCATGCAGAGATTGCAAAataaaaaga                                                                                                                                                   ]
[+] EMBL AU075343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTTGCNCCAGATTATACATTGAAAGTANCGAATGTGAACATGGACAACTTGAATAGCAAGTCATATCTAAGTTCAATCAAAGTNCAAGTCATGGAGAGTTTGCGGGCCATACAACATNCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGATATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATNCCCAAGACAAGCAGATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTGGTGCTGTTGCGCGGTTTAACAGCGTTAGGTGGGAAATACTGTCAATTGACTTGTTAGGATCTAACACCTTTGCCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTAGTTGCATGCAGAGATTGCAAATTCTTAGTCGGTGGTAATGATTCATAGTTTTTGGCTGCACACATTTTTCCTATCTTTTTTTGTTTAAACCCGGCGTATGTGGTTATCAGGTTGGACCTACTCTCAACGTCCTTAAAAAGAAATAAACTTCTATAATTTGGATAAAAAAAAAAAAAA]
[+] EMBL CB680404             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CACCTTCCTTTGAATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTAGTTGCATGCAGAGATTGCAACCTCTTAGTCGGTGGTAATGATTCATAGTTTTTGGCTGCACACATTTTTCCTATCTTTTTTTGTTTAAACCCGGCGTATGTGGTTATCAGGTTGGACCTACTCTCAACGTCCTTAAAAAGAAATAAACTTCTA                        ]




>consensus_12030#0
TTCTACAGCGGCGTTCCACTCGGGTTGGTCTCTCCCCCGAGGCACGGCCGCCGCCGCCGC
CGCCGCCGCGCTCGGTCTAATCGGAATCTATTTCTCGACGCGACTCCGCTTCCCCGGCTC
CCCTCTCACCCTTCCGCGGCGCCGCCGCCGCCGCTTGTAGCGGTTGGGGGGCGAGCGGCC
GCTCGAGAGCGAAGCGATGCTGGAGAAAGACAGGATAGCCTACTTCTACGATGGCGATGT
GGGCAATGTCTACTTTGGGCCAAATCACCCGATGAAACCACATCGACTTTGTATGACACA
TCATCTTGTGCTTTCATATGATCTTCACAAGAAGATGGAGATATATAGGCCCCACAAAGC
ATATCCAACAGAGCTCGCACAGTTCCATTCTGCTGATTATGTGGAATTCTTGCATCGGAT
AACTCCTGACACCCAACACCTGTATGAAAATGAATTACGTAGATACAATCTTGGAGAAGA
CTGCCCAGTCTTTGATAATCTGTTTGAGTTTTGCCAAATATATGCTGGAGGAACTCTAGA
TGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATT
GCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGG
AATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCA
CGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGGTAATGACTGTAAGTTTCCA
CAAGTATGGTGATTTTTTCTTCCCTGGCACAGGTGATATTAAGGATATAGGAGAAAGAGA
AGGAAAATATTATGCCATTAACATTCCACTTAAAGATGGGATAGATGACTCCGGCTTTAC
TCGCCTTTTTAAAACAGTTATTGCCAAAGTTGTTGAGACATATCTGCCAGATGCTATTGT
TCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCCAT
TGAAGGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCCCTCTACTGGTGAC
TGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGGTGT
TCTTCTAGATACGGAGCTCCCAAATGAAATTCCAGACAATGAATACATCAAATACTTTGC
TCCAGATTATACATTGAAAGTATCGAATGTGAACATGGACAACTTGAATAGCAAGTCATA
TCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCATACAACATGCGCCTGG
TGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGATATTGATGAAGATGAGCT
GGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAGATTCATCGCGATGACGA
GTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTT
TGTATGATGAAACTGGATAGAGAAAGTCTGGTGCTGTTGCGCGGTTTAACAGCGTTAGGT
GGGAAATACTGTCAATTGACTTGTTAGGATCTAACACCTTTGCCTGCATATAGTGCGTGT
ACGTTCCTACTTTTTAATCAGTTACATATGCTAGTTGCATGCAGAGATTGCAAATTCTTA
GTCGGTGGTAATGATTCATAGTTTTTGGCTGCACACATTTTTCCTATCTTTTTTTGTTTA
AACCCGGCGTATGTGGTTATCAGGTTGGACCTACTCTCAACGTCCTTAAAAAGAAATAAA
CTTCTATAATTTGGATAAAAAAAAAAAAAA

consensusID : consensus_12030#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 805
fasta sequence

                              [AAACCTTCTCTCAAGTCTCAATTATTTCTTACCATAGTTTTGAGATTGTTATTGCACTAATAGTTCTGACTTATTTTGAAATTTAAATTTTGTTTCTTTGAGCTATACTTAGTGAATGATCTTTTAATACTTGCATGTGTACTTGCAAACAGGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCCCTCTACTGGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGGTGTTCTTCTAGATACGGAGCTCCCAAATGAAATTCCAGACAATGAATACATCAAATACTTTGCTCCAGATTATACATTGAAAGTATCGAATGTGAACATGGACAACTTGAATAGCAAGTCATATCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCATACAACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGATATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAGATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTGGTGCTGTTGCGCGGTTTAACAGCGTTAGGTGGGAAATACTGTCAATTGACTTGTTAGGATCTAACACCTTTGCCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTAGTTGCATGCAGAGATTGCAAATTCT]

[-] EMBL CB651219             [AAACCTTCTCTCAAGTCTCAATTATTTCTTACCATAGTTTTGAGATTGTTATTGCACTAATAGTTCTGACTTATTTTGAAATTTAAATTTTGTTTCTTTGAGCTATACTTAGTGAATGATCTTTTAATACTTGCATGTGTACTTGCAAACAGGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCCCTCTACTGGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGGTGTTCTTCTAGATACGGAGCTCCCAAATGAAATTCCAGACAATGAATACATCAAATACTTTGCTCCAGATTATACATTGAAAGTATCGAATGTGAACATGGACAACTTGAATAGCAAGTCATATCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCATACAACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGATATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAGATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTGGTGCTGTTGCGCGGTTTAACAGCGTTAGGTGGGAAATACTGTCAATTGACTTGTTAGGATCTAACACCTTTGCCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTAGTTGCATGCAGAGATTGCAAATTCT]




>consensus_12030#1
AAACCTTCTCTCAAGTCTCAATTATTTCTTACCATAGTTTTGAGATTGTTATTGCACTAA
TAGTTCTGACTTATTTTGAAATTTAAATTTTGTTTCTTTGAGCTATACTTAGTGAATGAT
CTTTTAATACTTGCATGTGTACTTGCAAACAGGCCATGCTGAATGTGTGAAGTTTGTCAA
GAAATTCAATATCCCTCTACTGGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGC
ACGCTGTTGGGCTGTTGAAACTGGTGTTCTTCTAGATACGGAGCTCCCAAATGAAATTCC
AGACAATGAATACATCAAATACTTTGCTCCAGATTATACATTGAAAGTATCGAATGTGAA
CATGGACAACTTGAATAGCAAGTCATATCTAAGTTCAATCAAAGTGCAAGTCATGGAGAG
TTTGCGGGCCATACAACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTA
TATCCCAGATATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCA
AGACAAGCAGATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGA
GGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTGGTG
CTGTTGCGCGGTTTAACAGCGTTAGGTGGGAAATACTGTCAATTGACTTGTTAGGATCTA
ACACCTTTGCCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTA
GTTGCATGCAGAGATTGCAAATTCT

consensusID : consensus_12030#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 777
fasta sequence

                              [TTCTTTGCTATTTTAGATGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGTTCATGCTGTTTCCAATAAAGTCATGGATATGTAGTTAATCATTTATTGCTGCCAATATTTTTCCAATCCAATTTCCATCTCTGTGCATTTTGTGAATTTTGGTGGTACCATAATATTTATACTAATTCCAGTCTCGGGCTTTTGATTTTGCAGGGTATACTAATATTGTATACTTATTTTGATTTTGCAGGGTAATGACTGTAAGTTTCCACAAGTATGGTGATTTTTTCTTCCCTGGCACAGGTGATATTAAGGATATAGGAGAAAGAGAAGGAAAATATTATGCCATTAACATTCCACTTAAAGATGGGATAGATGACTCCGGCTTTACTCGCCTTTTTAAAACAGTTATTGCCAAAGTTGTTGAGACATATCTGCCAGGTGCTATTGTTCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCCATTGAAGGTTCTGTACTTCTTAAATCTGATGTGTACTTGTTGATTCAGCAGAACTGTGCTCTAGATGTANAGTTAGTGAACTGTGCTGCA]

[+] EMBL CB651218             [TTCTTTGCTATTTTAGATGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGTTCATGCTGTTTCCAATAAAGTCATGGATATGTAGTTAATCATTTATTGCTGCCAATATTTTTCCAATCCAATTTCCATCTCTGTGCATTTTGTGAATTTTGGTGGTACCATAATATTTATACTAATTCCAGTCTCGGGCTTTTGATTTTGCAGGGTATACTAATATTGTATACTTATTTTGATTTTGCAGGGTAATGACTGTAAGTTTCCACAAGTATGGTGATTTTTTCTTCCCTGGCACAGGTGATATTAAGGATATAGGAGAAAGAGAAGGAAAATATTATGCCATTAACATTCCACTTAAAGATGGGATAGATGACTCCGGCTTTACTCGCCTTTTTAAAACAGTTATTGCCAAAGTTGTTGAGACATATCTGCCAGGTGCTATTGTTCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCCATTGAAGGTTCTGTACTTCTTAAATCTGATGTGTACTTGTTGATTCAGCAGAACTGTGCTCTAGATGTANAGTTAGTGAACTGTGCTGCA]




>consensus_12030#2
TTCTTTGCTATTTTAGATGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATC
AATTGGGCTGGTGGATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATT
AATGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATT
GATATCGATGTTCATCACGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGTTC
ATGCTGTTTCCAATAAAGTCATGGATATGTAGTTAATCATTTATTGCTGCCAATATTTTT
CCAATCCAATTTCCATCTCTGTGCATTTTGTGAATTTTGGTGGTACCATAATATTTATAC
TAATTCCAGTCTCGGGCTTTTGATTTTGCAGGGTATACTAATATTGTATACTTATTTTGA
TTTTGCAGGGTAATGACTGTAAGTTTCCACAAGTATGGTGATTTTTTCTTCCCTGGCACA
GGTGATATTAAGGATATAGGAGAAAGAGAAGGAAAATATTATGCCATTAACATTCCACTT
AAAGATGGGATAGATGACTCCGGCTTTACTCGCCTTTTTAAAACAGTTATTGCCAAAGTT
GTTGAGACATATCTGCCAGGTGCTATTGTTCTTCAATGCGGGGCTGATTCCTTGGCACGG
GACCGTCTGGGGTGCTTCAATCTGTCCATTGAAGGTTCTGTACTTCTTAAATCTGATGTG
TACTTGTTGATTCAGCAGAACTGTGCTCTAGATGTANAGTTAGTGAACTGTGCTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12030#0      TTCTACAGCGGCGTTCCACTCGGGTTGGTCTCTCCCCCGAGGCACGGCCGCCGCCGCCGC 60
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      CGCCGCCGCGCTCGGTCTAATCGGAATCTATTTCTCGACGCGACTCCGCTTCCCCGGCTC 120
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      CCCTCTCACCCTTCCGCGGCGCCGCCGCCGCCGCTTGTAGCGGTTGGGGGGCGAGCGGCC 180
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      GCTCGAGAGCGAAGCGATGCTGGAGAAAGACAGGATAGCCTACTTCTACGATGGCGATGT 240
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      GGGCAATGTCTACTTTGGGCCAAATCACCCGATGAAACCACATCGACTTTGTATGACACA 300
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      TCATCTTGTGCTTTCATATGATCTTCACAAGAAGATGGAGATATATAGGCCCCACAAAGC 360
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      ATATCCAACAGAGCTCGCACAGTTCCATTCTGCTGATTATGTGGAATTCTTGCATCGGAT 420
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      AACTCCTGACACCCAACACCTGTATGAAAATGAATTACGTAGATACAATCTTGGAGAAGA 480
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      CTGCCCAGTCTTTGATAATCTGTTTGAGTTTTGCCAAATATATGCTGGAGGAACTCTAGA 540
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      TGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTGGATT 600
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      GCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGG 660
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      AATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCA 720
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      CGGGGATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGGTAATGACTGTAAGTTTCCA 780
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      CAAGTATGGTGATTTTTTCTTCCCTGGCACAGGTGATATTAAGGATATAGGAGAAAGAGA 840
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      AGGAAAATATTATGCCATTAACATTCCACTTAAAGATGGGATAGATGACTCCGGCTTTAC 900
consensus_12030#1      -------------------AAACCTTCTCTCAA-----GTCTCAATTATTTC----TTAC 32
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      TCGCCTTTTTAAAACAGTTATTGCCAAAGTTGTTGAGACATATC--TGCCAGATGCTATT 958
consensus_12030#1      -CATAGTTTTGAGATTGTTATTGCACTAATAGTTCTGACTTATT--TTGAAATTTAAATT 89
consensus_12030#2      ----------------TTCTTTGCTATTTTAGATGCGGCTCGCAGATTGAATCATAAAAC 44
                                        *  ****     * * *  * *       *   *      *  

consensus_12030#0      GTTCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCC 1018
consensus_12030#1      TTGTTTCTTTG---AGCTA--TACTTAGTGAATGATCTTTTAA--TACTTGCATGTGTAC 142
consensus_12030#2      ATGTGATATTG-----CTATCAATTGGGCTGGTGGA-TTGCATCATGCAAAGAAGTGCG- 97
                        *       **     **      *  *     *    *      * *    *  **   

consensus_12030#0      ATTGAA---GGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCC-CTCTACT 1074
consensus_12030#1      TTGCAAACAGGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCC-CTCTACT 201
consensus_12030#2      AGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGGAATTCTGGAGCTTCTCAAGT 157
                           *    **   ****  **   ***  *   *   * *****   * *  *** * *

consensus_12030#0      GGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGG-GCTGTTGAAA 1133
consensus_12030#1      GGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGG-GCTGTTGAAA 260
consensus_12030#2      ACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGGGATGGAGTTGAAGAAG 217
                                ****  *  ***   * *      *  * ****  * *** * **  *** 

consensus_12030#0      CTGGTGTTCTTCTAGATACG-----GAGCTCCCAAATGAAATTCCAGACAATGAATACAT 1188
consensus_12030#1      CTGGTGTTCTTCTAGATACG-----GAGCTCCCAAATGAAATTCCAGACAATGAATACAT 315
consensus_12030#2      CCTTTTATTTCACTGACAGGTTCATGCTGTTTCCAATAAAGTCATGGATATGTAGTTAAT 277
                       *   *  * *    ** * *     *   *  * *** ** *    ** *   * *  **

consensus_12030#0      CAAATACT-TTGCTCCAGATTATACATTGAAAGTATCGAATGTGAACATG--GACAACTT 1245
consensus_12030#1      CAAATACT-TTGCTCCAGATTATACATTGAAAGTATCGAATGTGAACATG--GACAACTT 372
consensus_12030#2      CATTTATTGCTGCCAATATTTTTCCAATCCAATTTCCATCTCTGTGCATTTTGTGAATTT 337
                       **  ** *  ***      ** * ** *  ** *  *   * **  ***   *  ** **

consensus_12030#0      GAATAGCAA-GTCATATCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCA 1304
consensus_12030#1      GAATAGCAA-GTCATATCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCA 431
consensus_12030#2      TGGTGGTACCATAATATTTATACTAATTCCAGTCTCGGGCTTTTGAT--TTTGCAGGGTA 395
                          * * *   * **** **   * * ** *    *  *   * **   ***** **  *

consensus_12030#0      TAC-AACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGAT 1363
consensus_12030#1      TAC-AACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGAT 490
consensus_12030#2      TACTAATATTGTATACTTATTTTGATTTTGCAGGGTAAT---GACTGTAAGTTTCCACAA 452
                       *** ** **        * **  ***     *** *      ** * * *  * *** * 

consensus_12030#0      ATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAG 1423
consensus_12030#1      ATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAG 550
consensus_12030#2      GT--ATGGTGATTTTTTCTTCCCTGGCACAGGTGATATTAAGGATATAGGAGAAAGAGAA 510
                        *  ***  ***    *    ****    * ***    * ** ***    *** *   * 

consensus_12030#0      ATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCC 1483
consensus_12030#1      ATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAGGACGGGGCC 610
consensus_12030#2      GGAAAATATTATGCCATTAACATTCCACTTAAAGATGGGATAGATGACTCCGGCTTTACT 570
                           *     *** *    **  *  *  * *  * *  *  *** *    * *    * 

consensus_12030#0      CGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAA---GTCTGGTGCTGTTGC 1540
consensus_12030#1      CGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAA---GTCTGGTGCTGTTGC 667
consensus_12030#2      CGCCTTTTTAAAACAGTTAT-TGCCAAAGTTGTTGAGACATATCTGCCAGGTGCTATTGT 629
                       **       *      ** * **   **  **   *** * *   * * ****** *** 

consensus_12030#0      GCGGTTTAACAGCGTTAGGTGGGAAATACTG--TCAATTGACTTGTTAGGATCTAACACC 1598
consensus_12030#1      GCGGTTTAACAGCGTTAGGTGGGAAATACTG--TCAATTGACTTGTTAGGATCTAACACC 725
consensus_12030#2      TCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCCAT 689
                        *       * * * *   *       ** *   *   **   ** *   ****  *   

consensus_12030#0      TTTG---CCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTAGT 1655
consensus_12030#1      TTTG---CCTGCATATAGTGCGTGTACGTTCCTACTTTTTAATCAGTTACATATGCTAGT 782
consensus_12030#2      TGAAGGTTCTGTACTTCTTAAATCTG-ATGTGTACTTGTTGATTCAGCAGAACTGTGCTC 748
                       *       *** *  *  *   * *   *   ***** ** **     * *  **     

consensus_12030#0      TGCATGCAGAGATTGCAAATTCTTAGTCGGTGGTAATGATTCATAGTTTTTGGCTGCACA 1715
consensus_12030#1      TGCATGCAGAGATTGCAAATTCT------------------------------------- 805
consensus_12030#2      TAGATGTANAGTTAGTGAACTGTGCTGCA------------------------------- 777
                       *  *** * ** * *  ** * *                                     

consensus_12030#0      CATTTTTCCTATCTTTTTTTGTTTAAACCCGGCGTATGTGGTTATCAGGTTGGACCTACT 1775
consensus_12030#1      ------------------------------------------------------------
consensus_12030#2      ------------------------------------------------------------
                                                                                   

consensus_12030#0      CTCAACGTCCTTAAAAAGAAATAAACTTCTATAATTTGGATAAAAAAAAAAAAAA 1830
consensus_12030#1      -------------------------------------------------------
consensus_12030#2      -------------------------------------------------------