cluster # 12038

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Oryza sativa
cluster # 12038 cluster # 12038 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12038#0 length = 344 sequences # 3
consensus_12038#1 length = 311 sequences # 5

consensus_12038#2 length = 204 sequences # 1
consensus_12038#3 length = 201 sequences # 1

consensusID : consensus_12038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 344
fasta sequence

                              [CCGGTAGCGTTGGCTTGTCACCCGAG-TGGGGCAATAAGGTGGTGTTGGATGCCTGGTC--TTGCGCTT-GGGTCTGCGCCTGTGGTTTGCACTATGCGGCCCGCCCGTTCCAAGTTGCGTAGCGTGTGTGGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCAGCCCTGGCCCGCTTCCGGCCCAAGTGCCTTCCATGGCAGACCACCACC-TTTTTCAAAA--AAAAAAACAAAATAAAAAAAAAAAATAAAAAAAAAAA]

[+] EMBL BI795296             [CCGGTAGCGTTGGCTTGTCACCCGAG TGGGGCAATAAGGTGGTGTTGGATGCCTGGTC  TTGCGCTT GGGTCTGCGCCTGTGGTTTGCACTATGCGGCCCGCCCGTTCCAAGTTGCGTAGCGTGTGTGGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCAG CCTGGCCCGCTTCCGGCCCAAGTGCCTTCCATGGCAGACCACCACC TTTTTCATAA  AAAAAAACAAAATAAAAA                   ]
[-] EMBL AU225833             [      cCGCTGGCTTGTCACCCGAGCGGGGGCAATAAGGTGGTGTTGGATGCCTGGTCGTTTGCGCTTGGGGTCTGCGCCTGTGGTTTGCACTATGCGGCCCGCCCGTTCCAAGTTGCGTAGCGTGTGTGGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCAGCCCTGGCCCGCTTCCGGCCCAAGTGCCTTCCATGGCAGACCACCACC TTTTTAAAGA  AGAAAAAagcggc                        ]
[+] EMBL AU174472             [                                                                                                                                                                   ACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCAGCCCTGGCCCGCTTCCGGCCCAAGTGCCTTCCATGGCAGACCACCACCTTTTTTTAGAATTAAATAAATAAAATAAGATAAAAAAATAAAAAAAAAAA]




>consensus_12038#0
CCGGTAGCGTTGGCTTGTCACCCGAGTGGGGCAATAAGGTGGTGTTGGATGCCTGGTCTT
GCGCTTGGGTCTGCGCCTGTGGTTTGCACTATGCGGCCCGCCCGTTCCAAGTTGCGTAGC
GTGTGTGGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGC
GTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATAACGG
GCCGCTGCAGCCCTGGCCCGCTTCCGGCCCAAGTGCCTTCCATGGCAGACCACCACCTTT
TTCAAAAAAAAAAACAAAATAAAAAAAAAAAATAAAAAAAAAAA

consensusID : consensus_12038#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 311
fasta sequence

                              [CGGGGGC-AATAAGGTGGTGTTGGATGCCTG-GTCGTTTGCGCTTGGGT-CTGCGCCTGTGGTTT-GCACTATGCGGCCC-GCCC-GTTCCAAGTTGCGTAGC-GTGTGT-GGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCC-AACGGTGGCTGGTTTCACAGAGCAGC-GAGTACCGCCCGCTTCCAACGGTGGAAGGATA-ACGGGC-CG-CTGCAGC--CTGGCCCGCTTCCATCTTAAAGAAACAGAAAGAACAGATA]

[-] EMBL BU673567             [CGGGGGC AATAAGGTGGTGTTGGACGCCTG GTCGGTTGCCCTTGGGT CTGCGCCTGTGGTTTCGCACTATACGGCCC GCCC GTTCCAAGTTGCGTAGCAGTGTGTCGGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGACTGGCGGGTATTGCGTGAGGCTGATTTCACAGAGCAGCGAGTACCGCCCGCTTCCAAACGGTGCCTGGTTTCACAGAGCAGC GAGTACCGCCCGCTTCCAACGGTGGAAGGATA ACGGGCACG CTGCAGC  CTGGCCCGCGTCCATCTTAAAGAAACAGAAAGAACAGATA]
[-] EMBL CB965182             [CGGGGGCAAATAAGGTGGTGTTGGATGCCTGTGCAGTTTGCGCTTGGGTGCTGCGCCTGTGGTTT GCACTATGCGGCCCAGCCCAGTTCCAAGTTGCGTAGC G GTGT GGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCC AACGGTGGCTGGTTTCACAGAGCAGCAGAGTACCGCCCGCTTCCAACGGTGGAAGGATATACGGGC CG CTGCAGCCACTGGCCCGCTTCCATC TAAA AAATAAAA          ]
[-] EMBL BU673351             [CGGGGGC AATAAGGTGGTGTTGGATGCCTG GTCGTTTGCGCTTGGGT CTGCGCCTGTGGTTT GCACTATGCGGCCC GCCC GTTCCAAGTTGCGTAGC GTGTGT GGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCC AACGGTGGCTGGTTTCACAGAGCAGC GAGTACCGCCCGCTTCCAACGGTGGAAGGATA ACGGGC CG CTGCAGC  CTGGCCCGC                               ]
[-] EMBL CB964587             [CGGGGGC AATAAGGTGGTGTTGGATGCCTG GTCGTTTGCGCTTGGGT CTGCGCCTGTGGTTT GCACTATGCGGCCC GCCC GTTCCAAGTTGCGTAGC GTGTGT GGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCC AACGGTGGCTGGTTTCACAGAGCAGC GAGTACCGCCCGCTTCCAACGGTGGAAGGATA ACGGGC CG CTGCAGC  CTGGCCCG                                ]
[-] EMBL CB965462             [               TGGTGTTGGATGCCTG GTCGTTTGCGCTTGGGT CTGCGCCTGTGGTTT GCACTATGCGGCCC GCCC GTTCCAAGTTGCGTAGC GTGTGT GGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCC AACGGTGGCTGGTTTCACAGAGCAGC GAGTACCGCCCGCTTCCAACGGTGGAAGGATA ACGGGC CGCCTGCAGC  CTGGCCCGCT                              ]




>consensus_12038#1
CGGGGGCAATAAGGTGGTGTTGGATGCCTGGTCGTTTGCGCTTGGGTCTGCGCCTGTGGT
TTGCACTATGCGGCCCGCCCGTTCCAAGTTGCGTAGCGTGTGTGGGGCGCCTGGGCGAAG
GCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCTGGTTTCACAGAGCAG
CGAGTACCGCCCGCTTCCAACGGTGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTC
CAACGGTGGAAGGATAACGGGCCGCTGCAGCCTGGCCCGCTTCCATCTTAAAGAAACAGA
AAGAACAGATA

consensusID : consensus_12038#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [GCTCTATGCGGCCCAGTCCGNTCCAAAGTTNCGTANCGTGTATGGGGCGCCCTGGCGAAAGCTAGAGCGTCCCTGCACCTANAGTGNCGGGTATTGCGTNAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATTACGGGCCGCTGCAGCCCTGGCCCGCTTCCGGCCCATGTGCCTTCCATGGCA]

[+] EMBL OSYK257N             [GCTCTATGCGGCCCAGTCCGNTCCAAAGTTNCGTANCGTGTATGGGGCGCCCTGGCGAAAGCTAGAGCGTCCCTGCACCTANAGTGNCGGGTATTGCGTNAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATTACGGGCCGCTGCAGCCCTGGCCCGCTTCCGGCCCATGTGCCTTCCATGGCA]




>consensus_12038#2
GCTCTATGCGGCCCAGTCCGNTCCAAAGTTNCGTANCGTGTATGGGGCGCCCTGGCGAAA
GCTAGAGCGTCCCTGCACCTANAGTGNCGGGTATTGCGTNAGGCTGGTTTCACAGAGCAG
CGAGTACCGCCCGCTTCCAACGGTGGAAGGATTACGGGCCGCTGCAGCCCTGGCCCGCTT
CCGGCCCATGTGCCTTCCATGGCA

consensusID : consensus_12038#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [GCGGGCCAGTGTCTGCAGCTGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCGGTACTCGCATGCTCTGATGAAACCACGCCACCGATTGGAACGCGGGCTGGTACTCTGCTGCTCTTGTGAAACCATGCCTCACTGCACATACCCTGCCACCTCTACGGTGCATGGGACTGCTCGACGCCTTCTGCCCAGTGCGCCCCTA]

[+] EMBL CB966068             [GCGGGCCAGTGTCTGCAGCTGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCGGTACTCGCATGCTCTGATGAAACCACGCCACCGATTGGAACGCGGGCTGGTACTCTGCTGCTCTTGTGAAACCATGCCTCACTGCACATACCCTGCCACCTCTACGGTGCATGGGACTGCTCGACGCCTTCTGCCCAGTGCGCCCCTA]




>consensus_12038#3
GCGGGCCAGTGTCTGCAGCTGGCCCGTTATCCTTCCACCGTTGGAAGCGGGCGGTACTCG
CATGCTCTGATGAAACCACGCCACCGATTGGAACGCGGGCTGGTACTCTGCTGCTCTTGT
GAAACCATGCCTCACTGCACATACCCTGCCACCTCTACGGTGCATGGGACTGCTCGACGC
CTTCTGCCCAGTGCGCCCCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12038#0      CCGGTAGCGTTGGCTTGTCACCCGAGTGGGGCAATAAGGTGGTGTTGGATGCCTGGTC-- 58
consensus_12038#2      ------------------------------------------------------------
consensus_12038#1      -------------------------CGGGGGCAATAAGGTGGTGTTGGATGCCTGGTCGT 35
consensus_12038#3      ------------------------------------------------------------
                                                                                   

consensus_12038#0      TTGCGCTTGGGTCTGCGCCTGTGGTTTGCACTATGCGGCCC-GCCCGTTCCAA-GTTGCG 116
consensus_12038#2      ---------------------------GCTCTATGCGGCCCAGTCCGNTCCAAAGTTNCG 33
consensus_12038#1      TTGCGCTTGGGTCTGCGCCTGTGGTTTGCACTATGCGGCCC-GCCCGTTCCAA-GTTGCG 93
consensus_12038#3      ------GCGGGCCAGTGTCTGCAGCTGGCCCGTTATCCTTC-CACCGTTGGAA----GCG 49
                                                  ** *  *      *   *** *  **     **

consensus_12038#0      TAGCGTGTGTGGGGCGCCTGGGCGAAGGCTCGA-GCGTCCCTGCACCTAGAGTGGCGGG- 174
consensus_12038#2      TANCGTGTATGGGGCGCCCTGGCGAAAGCTAGA-GCGTCCCTGCACCTANAGTGNCGGG- 91
consensus_12038#1      TAGCGTGTGTGGGGCGCCTGGGCGAAGGCTCGA-GCGTCCCTGCACCTAGAGTGGCGGG- 151
consensus_12038#3      GGCGGTAC-TCGCATGCTCTGATGAAACCACGCCACCGATTGGAACGCGGGCTGGTACTC 108
                           **   * *   **   *  ***  *  *   *      * **      **      

consensus_12038#0      TATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGA 234
consensus_12038#2      TATTGCGTNAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGA 151
consensus_12038#1      TATTGCGTGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGCTGG- 210
consensus_12038#3      TGCTGCTCTTGTGAAACCATGCCTCACTGCACATACCCTGCCACCTCTACGGTGCATGGG 168
                       *  ***    *          *    * **   ****   *     * ******   ** 

consensus_12038#0      -TAACGGGCCGCTGCAGCCCTGGCCCGCTTCCGGCC-CAAGTGCCTTCCATGGCAGACCA 292
consensus_12038#2      -TTACGGGCCGCTGCAGCCCTGGCCCGCTTCCGGCC-CATGTGCCTTCCATGGCA----- 204
consensus_12038#1      -TTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCA 269
consensus_12038#3      ACTGCTCGACGCCTTCTGCCCAGTGCGCCCCTA--------------------------- 201
                           *     **          *  ***  *                             

consensus_12038#0      CCACCTTTTTCAAAAAAAAAAACAAAATAAAAAAAAAAAATAAAAAAAAAAA 344
consensus_12038#2      ----------------------------------------------------
consensus_12038#1      GCCTGGCCCGCTTCCATCTTAAAGAAACAGAAAGAACAGATA---------- 311
consensus_12038#3      ----------------------------------------------------