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Oryza sativa
cluster # 12043 cluster # 12043       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12043#0 length = 1655 sequences # 8  
consensus_12043#1 length = 842 sequences # 1  
consensus_12043#2 length = 140 sequences # 1  

consensusID : consensus_12043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1655
fasta sequence
                              [CCTATCATCCACGACTCCCTCACTCCTCAACGCCATATCCAAATCTCCCGCGAATCCCTCCAAAACCCAACCATACATTGCACGCGCTCGCGCCACGCGAGAGCCGAGAGGTTTGCGCCCTTGCAGTTGCGGGGTGGGAGGGGAGAATGGCGCCGCCGCTGCTGCCGGCGGCTGAGGAAGACGGTGGTTGCGTGGCGAGGTGGATGCGGAGGGATGTGCTGCTGGGGCTGGCGCTGGGGCAGTTCGTGTCGCTGCTCATCACCTCCACCGGCTTCTCCTCCTCCGAGCTCGCCCGCCGAGGTATCAATGCACCGACATCTCAGTCTCTGTTGAACTACATCCTTCTCTCCCTTATCTATGGAGGTATACTCATCTACCGGAGACAGCCCCTCACGATAAAATGGTACTACTATTTGATCCTTGGGATTATTGACGTGGAAGCGAATTATATAGTTGTGAAGTCTTATCAGTACACATCTTTGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGATATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGTGTTGGAGTTTGCGTGGCTGGACTTATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGCTAAAGGACCCAACCCTTTGAAGGGAGATTTGCTCGTAATCTTTGGTTCCATGCTTTATGCTTGCAGCAATGTTACAGAGGAGTACCTGGTCAAGAAAAGCAACAGAATTGAGTTGGTGGCAATGTTGGGACTTTTTGGAGCTATTATCAGTGGAATACAAATAAGTATACTTGAGCGAAAAGAACTTCATTCAATCAAATGGAATGCTGGCGCAGTGCTTCCTTTTCTTGGATTCGCATTAGCGATGTTCCTGTTCTACTCAACTGTACCTACAGTACTGAAGATATGTGGGGCAACGATGCTGAACCTCTCACTGCTGACTTCAGATATGTGGGCTGTTCTGATCCGCATCTTTGCTTACCATGAGAAGGTTGACTGGATCTACTTCGTTGCCTTCGCCGGCACAGCGGCTGGCCTCCTCATCTACTCATACAAGAGCTCCAAGGAGGCAGAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACAAGCAGGGCAAAGCGGGCGATGAAGAGGCCGGAATGCAGAACTCCTCGTGAATTGAAGCTCCGGTGCCTGCATCTGCATCGGCATCGGCACGATCTCTCTCTAACAAGGGATCATCGTTAACTGCGTGCGAGTACACGTACTTACAGGGAAATATGTTAGTTGTTGATGAATTAACATCAGGTTTAGTGCGGGTGGAGTGAGGGAGGACAGGCAGTAATTGATTGAGCAGATGGGTAGAAGAGATCAAACGATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTTACAATAAAAAGATGTGCCAATTTCTTTTGTAAAAAAAATTGCAACTGGCAGTGAAATGGCAATGGTATTACAAAGTTTCACGAGGAAACTAAAACTTATACACTTAAAGCGAGTGGTACATGAGGAGACAAAAGGGAGTAAAACTTAATGCTGAAATTTTCAGAATTATAGATAAAAAA]

[+] EMBL AK070813             [CCTATCATCCACGACTCCCTCACTCCTCAACGCCATATCCAAATCTCCCGCGAATCCCTCCAAAACCCAACCATACATTGCACGCGCTCGCGCCACGCGAGAGCCGAGAGGTTTGCGCCCTTGCAGTTGCGGGGTGGGAGGGGAGAATGGCGCCGCCGCTGCTGCCGGCGGCTGAGGAAGACGGTGGTTGCGTGGCGAGGTGGATGCGGAGGGATGTGCTGCTGGGGCTGGCGCTGGGGCAGTTCGTGTCGCTGCTCATCACCTCCACCGGCTTCTCCTCCTCCGAGCTCGCCCGCCGAGGTATCAATGCACCGACATCTCAGTCTCTGTTGAACTACATCCTTCTCTCCCTTATCTATGGAGGTATACTCATCTACCGGAGACAGCCCCTCACGATAAAATGGTACTACTATTTGATCCTTGGGATTATTGACGTGGAAGCGAATTATATAGTTGTGAAGTCTTATCAGTACACATCTTTGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGATATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGTGTTGGAGTTTGCGTGGCTGGACTTATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGCTAAAGGACCCAACCCTTTGAAGGGAGATTTGCTCGTAATCTTTGGTTCCATGCTTTATGCTTGCAGCAATGTTACAGAGGAGTACCTGGTCAAGAAAAGCAACAGAATTGAGTTGGTGGCAATGTTGGGACTTTTTGGAGCTATTATCAGTGGAATACAAATAAGTATACTTGAGCGAAAAGAACTTCATTCAATCAAATGGAATGCTGGCGCAGTGCTTCCTTTTCTTGGATTCGCATTAGCGATGTTCCTGTTCTACTCAACTGTACCTACAGTACTGAAGATATGTGGGGCAACGATGCTGAACCTCTCACTGCTGACTTCAGATATGTGGGCTGTTCTGATCCGCATCTTTGCTTACCATGAGAAGGTTGACTGGATCTACTTCGTTGCCTTCGCCGGCACAGCGGCTGGCCTCCTCATCTACTCATACAAGAGCTCCAAGGAGGCAGAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACAAGCAGGGCAAAGCGGGCGATGAAGAGGCCGGAATGCAGAACTCCTCGTGAATTGAAGCTCCGGTGCCTGCATCTGCATCGGCATCGGCACGATCTCTCTCTAACAAGGGATCATCGTTAACTGCGTGCGAGTACACGTACTTACAGGGAAATATGTTAGTTGTTGATGAATTAACATCAGGTTTAGTGCGGGTGGAGTGAGGGAGGACAGGCAGTAATTGATTGAGCAGATGGGTAGAAGAGATCAAACGATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCA                                                                                                                                                                                           ]
[+] EMBL CF311303             [                                          ATCTCCCGCGAATCCCTCCAAAACCCAACCATACATTGCACGCGCTCGCGCCACGCGAGAGCCGAGAGGTTTGCGCCCTTGCAGTTGCGGGGTGGGAGGGGAGAATGGCGCCGCCGCTGCTGCCGGCGGCTGAGGAAGACGGTGGTTGCGTGGCGAGGTGGATGCGGAGGGATGTGCTGCTGGGGCTGGCGCTGGGGCAGTTCGTGTCGCTGCTCATCACCTCCACCGGCTTCTCCTCCTCCGAGCTCGCCCGCCGAGGTATCAATGCACCGACATCTCAGTCTCTGTTGAACTACATCCTTCTCTCCCTTATCTATGGAGGTATACTCATCTACCGGAGACAGCCCCTCACGATAAAATGGTACTACTATTTGATCCTTGGGATTATTGACGTGGAAGCGAATTATATAGTTGTGAAGTCTTATCAGTACACATCTTTGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGATATTTTTGAAGACCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSR26621A            [                                                                                                                               TGCGGGGTGGGAGGGGAGAATGGCGCCGCCGCTGCTGCCGGCGGCTGAGGAAGACGGTGGTTGCGTGGCGAGGTGGATGCGGAGGGATGTGCTGCTGGGGCTGGCGCTGGGGCAGTTCGTGTCGCTGCTCATCACCTCCACCGGCTTCTCCTCCTCCGAGCTCGCCCGCCGAGGTATCAATGCACCGACATCTCAGTCTCTGTTGAACTACATCCTTCTCTCCCTTATCTATGGAGGTATACTCATCTACCGGAGACAGCCCCTCACGATAAAATGGTACTACTATTTGATCCTTGGGATTATTGACGTGGAAGCGAATTATATAGTTGTGAAGTCTTATCAGTACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C72454               [                                                                                                                                                                                                                                                                                                                                                 CATCCTTCTCTCCCTTATCTATGGAGGTATACTCATCTACCGGAGACAGCCCCTCACGATAAAATGGTACTACTATTTGATCCTTGGGATTATTGACGTGGAAGCGAATTATATAGTTGTGAAGTCTTATCAGTACACATCTTTGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGATATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGTGTTGGAGTTTGCGTGGCTGGACTTATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGCTA   GACCCAACCCTTTGAAGGGAGATTTGCTCGTAATCTTTGGGTCCATGCNTTATGC TGCAGCAATG TACAGAGGNGTACCTGGTCAAGAAAAGC ACNGAATTGGGTTAANGGCAA GTTGGGANCTTTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CF311304             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATATGTGGGGCAACGATGCTGAACCTCTCACTGCTGACTTCAGATATGTGGGCTGTTCTGATCCGCATCTTTGCTTACCACGAGAAGGTTGACTGGATCTACTTCGTTGCCTTCGCCGGCACAGCGGCTGGCCTCCTCATCTACTCATACAAGAGCTCCAAGGAGGCAGAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACAAGCAGGGCAAAGCGGGCGATGAAGAGGCCGGAATGCAGAACTCCTCGTGAATTGAAGCTCCGGTGCCCGCATCTGCATCGGCATCGGCACGATCTCTCTCTAACAAGGGATCATCGTTAACTGCGTGCGAGTACACGTACTTACAGGGAAATATGTTAGTTGTTGATGAATTAACATCAGGTTTAGTGCGGGTGGAGTGAGGGAGGACAGGCAGTAATTGATTGAGCAGATGGGTAGAAGAGATCAAACGATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTTACAATAAAAA                                                                                                                                                                         ]
[+] EMBL AU172513             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CACAGCGGCTGGCCTCCTCATCTACTCATACAAGAGCTCCAAGGAGGCAGAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACAAGCAGGGCAAAGCGGGCGATGAAGAGGCCGGAATGCAGAACTCCTCGTGAATTGAAGCTCCGGTGCCTGCATCTGCATCGGCATCGGCACGATCTCTCTCTAACAAGGGATCATCGTTAACTGCGTGCGAGTACACGTACTTACAGGGAAATATGTTAGTTGTTGATGAATTAACATCAGGTTTAGTGCGGGTGGAGTGAGGGAGGACAGGCAGTAATTGATTGAGCAGATGGGTAGAAGAGATCAAACGATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTTACAATAAAAA                                                                                                                                                                         ]
[-] EMBL CF309928             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCGGCTGGCCTCCTCATCTACTCATACAAGAGCTCCAAGGAGGCAGAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACAAGCAGGGCAAAGCGGGCGATGAAGAGGCCGGAATGCAGAACTCCTCGTGAATTGAAGCTCCGGTGCCTGCATCTGCATCGGCATCGGCACGATCTCTCTCTAACAAGGGATCATCGTTAACTGCGTGCGAGTACACGTACTTACAGGGAAATATGTTAGTTGTTGATGAATTAACATCAGGTTTAGTGCGGGTGGAGTGAGGGAGGACAGGCAGTAATTGATTGAGCAGATGGGTAGAAGAGATCAAACGATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTTACAATAAATAGATGTGCCAATTTCTTTTGTAAAAAAAA                                                                                                                                             ]
[+] EMBL AU095483             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCGGGTGGAGTGAGGGAGGACAGGCAGTAATTGATTGAGCAGATGGGTAGAAGAGATCAAACGATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTTACAATAAATAGATGTGCCAATTTCTTTTGTTTTTGTCTTTGCAACTGGCAGTGAAATGGCAATGGTATTACAAAGTTTCACGAGGAAACTAAAACTTATACACTTAAAGCGAGTGGTACATGAGGAGACAAAAGGGAGTAAAACTTAATGCTGAAATTTTCAGAATTATAGATAAAAAA]


>consensus_12043#0 CCTATCATCCACGACTCCCTCACTCCTCAACGCCATATCCAAATCTCCCGCGAATCCCTC CAAAACCCAACCATACATTGCACGCGCTCGCGCCACGCGAGAGCCGAGAGGTTTGCGCCC TTGCAGTTGCGGGGTGGGAGGGGAGAATGGCGCCGCCGCTGCTGCCGGCGGCTGAGGAAG ACGGTGGTTGCGTGGCGAGGTGGATGCGGAGGGATGTGCTGCTGGGGCTGGCGCTGGGGC AGTTCGTGTCGCTGCTCATCACCTCCACCGGCTTCTCCTCCTCCGAGCTCGCCCGCCGAG GTATCAATGCACCGACATCTCAGTCTCTGTTGAACTACATCCTTCTCTCCCTTATCTATG GAGGTATACTCATCTACCGGAGACAGCCCCTCACGATAAAATGGTACTACTATTTGATCC TTGGGATTATTGACGTGGAAGCGAATTATATAGTTGTGAAGTCTTATCAGTACACATCTT TGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGA TATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGTGTTGGAGTTTGCGTGGCTG GACTTATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGCTAAAGGACCCAACC CTTTGAAGGGAGATTTGCTCGTAATCTTTGGTTCCATGCTTTATGCTTGCAGCAATGTTA CAGAGGAGTACCTGGTCAAGAAAAGCAACAGAATTGAGTTGGTGGCAATGTTGGGACTTT TTGGAGCTATTATCAGTGGAATACAAATAAGTATACTTGAGCGAAAAGAACTTCATTCAA TCAAATGGAATGCTGGCGCAGTGCTTCCTTTTCTTGGATTCGCATTAGCGATGTTCCTGT TCTACTCAACTGTACCTACAGTACTGAAGATATGTGGGGCAACGATGCTGAACCTCTCAC TGCTGACTTCAGATATGTGGGCTGTTCTGATCCGCATCTTTGCTTACCATGAGAAGGTTG ACTGGATCTACTTCGTTGCCTTCGCCGGCACAGCGGCTGGCCTCCTCATCTACTCATACA AGAGCTCCAAGGAGGCAGAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACAAGCAGGGCA AAGCGGGCGATGAAGAGGCCGGAATGCAGAACTCCTCGTGAATTGAAGCTCCGGTGCCTG CATCTGCATCGGCATCGGCACGATCTCTCTCTAACAAGGGATCATCGTTAACTGCGTGCG AGTACACGTACTTACAGGGAAATATGTTAGTTGTTGATGAATTAACATCAGGTTTAGTGC GGGTGGAGTGAGGGAGGACAGGCAGTAATTGATTGAGCAGATGGGTAGAAGAGATCAAAC GATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAAGCTTTCCTCACCT TTTATTATTTTATAAAATATATACATCAATAATTTTACAATAAAAAGATGTGCCAATTTC TTTTGTAAAAAAAATTGCAACTGGCAGTGAAATGGCAATGGTATTACAAAGTTTCACGAG GAAACTAAAACTTATACACTTAAAGCGAGTGGTACATGAGGAGACAAAAGGGAGTAAAAC TTAATGCTGAAATTTTCAGAATTATAGATAAAAAA



consensusID : consensus_12043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 842
fasta sequence
                              [TCAATACACATCTTTGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGATATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGCGTTGGAGTTTGCGTGGCCGGACTCATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGCTAAAGGACCCAACCCTTTGAAGGGAGATTTGCTCGTAATATTTGGCTCCATGCTTTATGCTTGCAGCAATGTTACAGAGGAGTACCTGGTCAAGAAAAGTAACAGAATTGAGTTGATGGCAATGTTGGGACTTTTTGGAGCTGTTATCAGTGGAATACAAATAAGTATACTTGAGCGAAAAGAACTTCATTCAATCAAATGGACTGCTGGCGCAGTGCTTCCTTTTATTGGATTCGCATTGGCGATGTTCCTGTTCTACTCAACTGTACCTACAGTACTGAAGATATGTGGGGCAACTATGCTGAACCTCTCACTGCTGACTTCAGACATGTGGGCTGTTCTGATTCGAATCTTTGCGTACCATGAGAAGGTCGACTGGATCTACTTCGTTGCCTTCGCCGGCACGGCGGCTGGCCTCCTCATCTACTCATACAAGAGCTCCAAGGAGGCAAAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACGAGCATGGCAAAGCAGGCGATGAAGAGGCCGGAATGCAAAATCCGGCGTGAAACTCCTGTGCCTGCATCTCTAACAAGGGATCGTCGTTAACTGCGTGGGAATACACCTTCTTACAAGGAAAATGTATTTGATGATGAATTGGCAAAAAGGTTTAAGCAGGTTCCAACCCTTCAGTTG]

[+] EMBL CA757991             [TCAATACACATCTTTGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGATATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGCGTTGGAGTTTGCGTGGCCGGACTCATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGCTAAAGGACCCAACCCTTTGAAGGGAGATTTGCTCGTAATATTTGGCTCCATGCTTTATGCTTGCAGCAATGTTACAGAGGAGTACCTGGTCAAGAAAAGTAACAGAATTGAGTTGATGGCAATGTTGGGACTTTTTGGAGCTGTTATCAGTGGAATACAAATAAGTATACTTGAGCGAAAAGAACTTCATTCAATCAAATGGACTGCTGGCGCAGTGCTTCCTTTTATTGGATTCGCATTGGCGATGTTCCTGTTCTACTCAACTGTACCTACAGTACTGAAGATATGTGGGGCAACTATGCTGAACCTCTCACTGCTGACTTCAGACATGTGGGCTGTTCTGATTCGAATCTTTGCGTACCATGAGAAGGTCGACTGGATCTACTTCGTTGCCTTCGCCGGCACGGCGGCTGGCCTCCTCATCTACTCATACAAGAGCTCCAAGGAGGCAAAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACGAGCATGGCAAAGCAGGCGATGAAGAGGCCGGAATGCAAAATCCGGCGTGAAACTCCTGTGCCTGCATCTCTAACAAGGGATCGTCGTTAACTGCGTGGGAATACACCTTCTTACAAGGAAAATGTATTTGATGATGAATTGGCAAAAAGGTTTAAGCAGGTTCCAACCCTTCAGTTG]


>consensus_12043#1 TCAATACACATCTTTGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGAT TATTCTTACATGGATATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGCGTTGG AGTTTGCGTGGCCGGACTCATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGC TAAAGGACCCAACCCTTTGAAGGGAGATTTGCTCGTAATATTTGGCTCCATGCTTTATGC TTGCAGCAATGTTACAGAGGAGTACCTGGTCAAGAAAAGTAACAGAATTGAGTTGATGGC AATGTTGGGACTTTTTGGAGCTGTTATCAGTGGAATACAAATAAGTATACTTGAGCGAAA AGAACTTCATTCAATCAAATGGACTGCTGGCGCAGTGCTTCCTTTTATTGGATTCGCATT GGCGATGTTCCTGTTCTACTCAACTGTACCTACAGTACTGAAGATATGTGGGGCAACTAT GCTGAACCTCTCACTGCTGACTTCAGACATGTGGGCTGTTCTGATTCGAATCTTTGCGTA CCATGAGAAGGTCGACTGGATCTACTTCGTTGCCTTCGCCGGCACGGCGGCTGGCCTCCT CATCTACTCATACAAGAGCTCCAAGGAGGCAAAGGAGACGGCGCAGGTCGCCGGAGCTAG TGACGAGCATGGCAAAGCAGGCGATGAAGAGGCCGGAATGCAAAATCCGGCGTGAAACTC CTGTGCCTGCATCTCTAACAAGGGATCGTCGTTAACTGCGTGGGAATACACCTTCTTACA AGGAAAATGTATTTGATGATGAATTGGCAAAAAGGTTTAAGCAGGTTCCAACCCTTCAGT TG



consensusID : consensus_12043#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence
                              [AGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTTACAATANAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAACGTCACTGCCGTGCCG]

[+] EMBL CF319760             [AGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTTACAATANAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAACGTCACTGCCGTGCCG]


>consensus_12043#2 AGAAAAACTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAA TAATTTTACAATANAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAGAAA AAAACGTCACTGCCGTGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12043#0      CCTATCATCCACGACTCCCTCACTCCTCAACGCCATATCCAAATCTCCCGCGAATCCCTC 60
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      CAAAACCCAACCATACATTGCACGCGCTCGCGCCACGCGAGAGCCGAGAGGTTTGCGCCC 120
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      TTGCAGTTGCGGGGTGGGAGGGGAGAATGGCGCCGCCGCTGCTGCCGGCGGCTGAGGAAG 180
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      ACGGTGGTTGCGTGGCGAGGTGGATGCGGAGGGATGTGCTGCTGGGGCTGGCGCTGGGGC 240
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      AGTTCGTGTCGCTGCTCATCACCTCCACCGGCTTCTCCTCCTCCGAGCTCGCCCGCCGAG 300
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      GTATCAATGCACCGACATCTCAGTCTCTGTTGAACTACATCCTTCTCTCCCTTATCTATG 360
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      GAGGTATACTCATCTACCGGAGACAGCCCCTCACGATAAAATGGTACTACTATTTGATCC 420
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      TTGGGATTATTGACGTGGAAGCGAATTATATAGTTGTGAAGTCTTATCAGTACACATCTT 480
consensus_12043#1      ----------------------------------------------TCAATACACATCTT 14
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      TGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGA 540
consensus_12043#1      TGACAAGCGTGATGCTCTTGGATTGCTGGTCAATTCCTTGTGTGATTATTCTTACATGGA 74
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      TATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGTGTTGGAGTTTGCGTGGCTG 600
consensus_12043#1      TATTTTTGAAGACCAAGTATGGGCTCAGGAAGTTCATCGGCGTTGGAGTTTGCGTGGCCG 134
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      GACTTATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGCTAAAGGACCCAACC 660
consensus_12043#1      GACTCATATTAGTAGTATTTTCAGATGTCCATGCCTCTGATCGAGCTAAAGGACCCAACC 194
consensus_12043#2      -----------------------------------------------------AGAAAAA 7
                                                                               **  

consensus_12043#0      CTTTGAAGGGAGATTTGCTCGTAATCTTTGGTTCCATGCTTTATGCTTG-CAGCAATGTT 719
consensus_12043#1      CTTTGAAGGGAGATTTGCTCGTAATATTTGGCTCCATGCTTTATGCTTG-CAGCAATGTT 253
consensus_12043#2      CTGGGCAGGAAGCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTT 67
                       **  * *** ** *** ***    * * *   *  **    ***      **  *** **

consensus_12043#0      ACAGAGGAGTACCTGGTCAAGAAAAGCAACAGAATTGAGTTGGTGGCAATGTTGGGACTT 779
consensus_12043#1      ACAGAGGAGTACCTGGTCAAGAAAAGTAACAGAATTGAGTTGATGGCAATGTTGGGACTT 313
consensus_12043#2      ACAATANAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAACGT 127
                       ***    *  *       ** ****  *  * **   *         **       ** *

consensus_12043#0      TTTGGAGCTATTATCAGTGGAATACAAATAAGTATACTTGAGCGAAAAGAACTTCATTCA 839
consensus_12043#1      TTTGGAGCTGTTATCAGTGGAATACAAATAAGTATACTTGAGCGAAAAGAACTTCATTCA 373
consensus_12043#2      CACTGCCGTGCCG----------------------------------------------- 140
                           *   *                                                   

consensus_12043#0      ATCAAATGGAATGCTGGCGCAGTGCTTCCTTTTCTTGGATTCGCATTAGCGATGTTCCTG 899
consensus_12043#1      ATCAAATGGACTGCTGGCGCAGTGCTTCCTTTTATTGGATTCGCATTGGCGATGTTCCTG 433
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      TTCTACTCAACTGTACCTACAGTACTGAAGATATGTGGGGCAACGATGCTGAACCTCTCA 959
consensus_12043#1      TTCTACTCAACTGTACCTACAGTACTGAAGATATGTGGGGCAACTATGCTGAACCTCTCA 493
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      CTGCTGACTTCAGATATGTGGGCTGTTCTGATCCGCATCTTTGCTTACCATGAGAAGGTT 1019
consensus_12043#1      CTGCTGACTTCAGACATGTGGGCTGTTCTGATTCGAATCTTTGCGTACCATGAGAAGGTC 553
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      GACTGGATCTACTTCGTTGCCTTCGCCGGCACAGCGGCTGGCCTCCTCATCTACTCATAC 1079
consensus_12043#1      GACTGGATCTACTTCGTTGCCTTCGCCGGCACGGCGGCTGGCCTCCTCATCTACTCATAC 613
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      AAGAGCTCCAAGGAGGCAGAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACAAGCAGGGC 1139
consensus_12043#1      AAGAGCTCCAAGGAGGCAAAGGAGACGGCGCAGGTCGCCGGAGCTAGTGACGAGCATGGC 673
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      AAAGCGGGCGATGAAGAGGCCGGAATGCAGAACTCCTCGTGAATTGAAGCTCCGGTGCCT 1199
consensus_12043#1      AAAGCAGGCGATGAAGAGGCCGGAATGCAAAATCCGGCGTGAA-----ACTCCTGTGCCT 728
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      GCATCTGCATCGGCATCGGCACGATCTCTCTCTAACAAGGGATCATCGTTAACTGCGTGC 1259
consensus_12043#1      GCATCT-------------------------CTAACAAGGGATCGTCGTTAACTGCGTGG 763
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      GAGTACACGTACTTACAGGGAAATATGTTAGTTGTTGATGAATTAACATCAGGTTTAGTG 1319
consensus_12043#1      GAATACACCTTCTTACAAGGAAA-ATGT-ATTTGATGATGAATTGGCAAAAAGGTTTAAG 821
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      CGGGTGGAGTGAGGGAGGACAGGCAGTAATTGATTGAGCAGATGGGTAGAAGAGATCAAA 1379
consensus_12043#1      CAGGT----TCCAACCCTTCAGTTG----------------------------------- 842
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      CGATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAAGCTTTCCTCACC 1439
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      TTTTATTATTTTATAAAATATATACATCAATAATTTTACAATAAAAAGATGTGCCAATTT 1499
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      CTTTTGTAAAAAAAATTGCAACTGGCAGTGAAATGGCAATGGTATTACAAAGTTTCACGA 1559
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      GGAAACTAAAACTTATACACTTAAAGCGAGTGGTACATGAGGAGACAAAAGGGAGTAAAA 1619
consensus_12043#1      ------------------------------------------------------------
consensus_12043#2      ------------------------------------------------------------
                                                                                   

consensus_12043#0      CTTAATGCTGAAATTTTCAGAATTATAGATAAAAAA 1655
consensus_12043#1      ------------------------------------
consensus_12043#2      ------------------------------------
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)