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Oryza sativa
cluster # 12047 cluster # 12047       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12047#0 length = 1976 sequences # 6  
consensus_12047#1 length = 672 sequences # 2  
consensus_12047#2 length = 664 sequences # 2  

consensusID : consensus_12047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1976
fasta sequence
                              [TGCCCGCCCGCAGCATCAGCATGGACCTCGCCGCCGCCGCCGTGGCCGTCTCCTTCCCACGCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCGCTCCGCGCGCGGCCTCCTCCTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTACGCCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGCACGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAGAGCTTCTGCTTCATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAGATTCTTGGCGCCGATGATAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGTAGGCATGAACTAATGCTCGGAAACACTTTCATTCCCAATAATGGTTCAACACCCCCAGAAGGGGAGGTTCCCCCTCAGGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGATTTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGTACAGCACTCGACCAGTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTGCTGGTTGGCTTGCTGCTTTTCCTTTCTTTGAACCTCATTGGCAAATATGCATGGCTGGTGGCTTATCCACAGGATGGATTGAATGGGACGGAGAGCGGTTTGAATTTGAAAATGCTCCTTCTTATTCAGAAAAGAACTGGGGTGCAGGTTTTCCGAGGAAGTGGTATTGGGTCCAGTGCAATGTCTTCTCAGGCGCATCTGGTGAAGTTGCATTAACGGCTGCTGGCGGATTAAGGAAAATTGGATTGGGCGAAACCTATGAAAGTCCTTCACTGATTGGAATTCATTATGAGGGAAAATTCTATGAATTTGTGCCTTGGACCGGGACAGTGAGCTGGGACATTGCCCCTTGGGGTCACTGGAAGTTGTCCGGCGAGAACAAAAATCATCTGGTTGAAATAGAAGCAACCACAAAAGAACCAGGCACTGCTTTGCGAGCTCCAACCATGGAGGCTGGACTAGTGCCAGCATGCAAAGACACCTGCTATGGTGATC-TGAGGCTGCAAATGT-GGGAAAAGAGAAATGATGGTGGCAAGGGAAAGATGATACTCGACGCAACAAGCAACATGGCGGCACTAGAAGTTGGTGGAGGCCCTTGGTTCAATGGTTGGAAAGGCACGACTGTTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATT-TCTCAAGCCCCCTGGT-CTGTAGCATT-GTT-CAGGTCGAGCCAT-CGATAGGTAGAGATGAATAGGCCCTCCAAT-CT-T-GT-CACACCTTGAGTCTT-GAT-CT-GTT-CCT-CACT-TAGCAT-CAT-GTTTTCAGCCAGAGAACTACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCATGTTGCACAAATTTTTACAGATCAGGAATGGATGCTGTAATTCAAGAAAATAAGTATAATTCATCTTAGGCAGTTCCATCCTTTTGTGCTCATCTGAACTTCTGAAGTATCATAAAGAAGTGATAGCTGGATGCCCGGGCCTGCATCTGCAATTGTGGAGGTCTTTCTGGTCAGAATTGGCTGGAAACAATTGTTGTTAGCACACTTCATATGGTAAATCTTTCAGAGGTACTGACAGACAAAGACGTGTGTTTTCAATTATCATTGTACTAACAAGGATACCAGTGGGCCTAACAGCACATGACGGAAGTTCTAGCCTGTTGGCATAACATTGGATTATAGTATTACAAAGCTGAT]

[+] EMBL AK072052             [TGCCCGCCCGCAGCATCAGCATGGACCTCGCCGCCGCCGCCGTGGCCGTCTCCTTCCCACGCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCGCTCCGCGCGCGGCCTCCTCCTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTACGCCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGCACGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAGAGCTTCTGCTTCATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAGATTCTTGGCGCCGATGATAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGTAGGCATGAACTAATGCTCGGAAACACTTTCATTCCCAATAATGGTTCAACACCCCCAGAAGGGGAGGTTCCCCCTCAGGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGATTTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGTACAGCACTCGACCAGTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTGCTGGTTGGCTTGCTGCTTTTCCTTTCTTTGAACCTCATTGGCAAATATGCATGGCTGGTGGCTTATCCACAGGATGGATTGAATGGGACGGAGAGCGGTTTGAATTTGAAAATGCTCCTTCTTATTCAGAAAAGAACTGGGGTGCAGGTTTTCCGAGGAAGTGGTATTGGGTCCAGTGCAATGTCTTCTCAGGCGCATCTGGTGAAGTTGCATTAACGGCTGCTGGCGGATTAAGGAAAATTGGATTGGGCGAAACCTATGAAAGTCCTTCACTGATTGGAATTCATTATGAGGGAAAATTCTATGAATTTGTGCCTTGGACCGGGACAGTGAGCTGGGACATTGCCCCTTGGGGTCACTGGAAGTTGTCCGGCGAGAACAAAAATCATCTGGTTGAAATAGAAGCAACCACAAAAGAACCAGGCACTGCTTTGCGAGCTCCAACCATGGAGGCTGGACTAGTGCCAGCATGCAAAGACACCTGCTATGGTGATC TGAGGCTGCAAATGT GGGAAAAGAGAAATGATGGTGGCAAGGGAAAGATGATACTCGACGCAACAAGCAACATGGCGGCACTAGAAGTTGGTGGAGGCCCTTGGTTCAATGGTTGGAAAGGCACGACTGTTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATT TCTCAAGCCCCCTGGT CTGTAGCATT GTT CAGGTCGAGCCAT CGATAGGTAGAGATGAATAGGCCCTCCAAT CT T GT CACACCTTGAGTCTT GAT CT GTT CCT CACT TAGCAT CAT GTTTTCAGCCAGAGAACTACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCATGTTGCACAAATTTTTACAGATCAGGAATGGATGCTGTAATTCAAGAAAATAAGTATAATTCATCTTAGGCAGTTCCATCCTTTTGTGCTCATCTGAACTTCTGAAGTATCATAAAGAAGTGATAGCTGGATGCCCGGGCCTGCATCTGCAATTGTGGAGGTCTTTCTGGTCAGAATTGGCTGGAAACAATTGTTGTTAGCACACTTCATATGGTAAATCTTTCAGAGGTACTGACAGACAAAGACGTGTGTTTTCAATTATCATTGTACTAACAAGGATACCAGTGGGCCTAACAGCACATGACGGAAGTTCTAGCCTGTTGGCATAACATTGGATTATAGTATTACAAAGCTGAT]
[+] EMBL CB621955             [                                                  TCCCTCTTAAGCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCGCTCCGCGCGCGGCCTCCTCCTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTACGCCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGCACGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAGAGCTTCTGCTTCATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAGATTCTCGGCGCCGATGATAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGTAGGCATGAACTAATGCTCGGAAACACTTTCATTCCCAATAATGGTTCAACACCCCCAGAAGGGGAGGTTCCCCCTCAGGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGATTTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGTACAGCACTCGACCAGTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTGCTGGTTGGCTTGCTGCTTTTCCTTTCTTTGAACCTCATTGGCAAATATGCATGGCTGGTGGCTTATCCACAGGATGGATTGAATGGGACGGAGAGCGGTTTGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB655354             [                                                                                                                                                                        TCTACGCCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGCACGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAGAGCTTCTGCTTCATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAGATTCTTGGCGCCGATGATAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGTAGGCATGAACTAATGCTCGGAAACACTTTCATTCCCAATAATGGTTCAACACCCCCAGAAGGGGAGGTTCCCCCTCAGGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGATTTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGTACAGCACTCGACCAGTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTGCTGGTTGGCTTGCTGCTTTTCCTTTCTTTGAACCTCATTGGCAAATATGCATGGCTGGTGGCTTATCCACAGGATGGATTGAATGGGACGGAGAGCGGTTTGAATTTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB685276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTGATTGGAATTCATTATGAGGGAAAATTCTATGAATTTGTGCCTTGGACCGGGACAGTGAGCTGGGACATTGCCCCTTGGGGTCACTGGAAGTTGTCCGGCGAGAACAAAAATCATCTGGTTGAAATAGAAGCAACCACAAAAGAACCAGGCACTGCTTTGCGAGCTCCAACCATGGAGGCTGGACTAGTGCCAGCATGCAAAGACACCTGCTATGGTGATC TGAGGCTGCAAATGT GGGAAAAGAGAAATGATGGTGGCAAGGGAAAGATGATACTCGACGCAACAAGCAACATGGCGGCACTAGAAGTTGGTGGAGGCCCTTGGTTCAATGGTTGGAAAGGCACGACTGTTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATT TCTCAAGCCCCCTGGT CTGTAGCATT GTT CAGGTCGAGCCAT CGATAGGTAGAGATGAATAGGCCCTCCAAT CT T GT CACACCTTGAGTCTT GAT CT GTT CCT CACT TAGCAT CAT GTTTTCAGCCAGAGAACTACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAA                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB655355             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCCTTGGGGTCACTGGAAGTTGTCCGGCGAGAACAAAAATCATCTGGTTGAAATAGAAGCAACCACAAAAGAACCAGGCACTGCTTTGCGAGCTCCAACCATGGAGGCTGGACTAGTGCCAGCATGCAAAGACACCTGCTATGGTGATC TGAGGCTGCAAATGT GGGAAAAGAGAAATGATGGTGGCAAGGGAAAGATGATACTCGACGCAACAAGCAACATGGCGGCACTAGAAGTTGGTGGAGGCCCTTGGTTCAATGGTTGGAAAGGCACGACTGTTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATT TCTCAAGCCCCCTGGT CTGTAGCATT GTT CAGGTCGAGCCAT CGATAGGTAGAGATGAATAGGCCCTCCAAT CT T GT CACCCCTTGAGTCTT GAT CT GTT CCT CACT TAGCAT CAT GTTTTCAGCCAGAGAACTACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCATGTTGCACAAATTTTTACAGATCAGGAATGGATGCTGTAATTCAAGAAAATAAGTATAATTCTTAAGAGGCAGTTCCATCCTTT                                                                                                                                                                                                                                                                                 ]
[+] EMBL BQ907905             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGCTTTGCGAGCTCCAACCATGGAGGCTGGACTAGTGCCAGCATGCAAAGACACCTGCTATGGTGATCTTGAGGCTGCAAATGTGGGGAAAAGAGAAATGATGGTGGCAAGGGAAAGATGATACTCGACGCAACAAGCAACAT GCGGCACTAGAAGTTGGTGGAGGCCCTTGGTTCAATGGTTGGAAAGGCACGACTGTTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATTGTCTCAAGCCCCTGGGTGCTGTAGCATTGGTTGCAGGTCGAGCCATGCGATAGGTAGAGATGAATAGGCCCTCCAATGCTGTGGTGCACACCTTGAGTCTTGGATGCTGGTTGCCTGCACTGTAGCATGCATGGTTTTCAGCCAGAGAACTACAGAAACAGGAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGC CCTTTCGGGTGAAATCATG TGCACAAATTTTTACTGATCAGGAATGGAT CTGTAATTCAAGAAAATAAGTATAATTCATCTTAGCCAGTTCaaaaa                                                                                                                                                                                                                                                                                    ]


>consensus_12047#0 TGCCCGCCCGCAGCATCAGCATGGACCTCGCCGCCGCCGCCGTGGCCGTCTCCTTCCCAC GCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCGCTCCGC GCGCGGCCTCCTCCTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTACGCCCCCA CGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGCACGGCGA GGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAGAGCTTCT GCTTCATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGGATCGGG TCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAGATTCTTGGCGCCGATGATAAGT ACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGTAGGCATGAACTAATGC TCGGAAACACTTTCATTCCCAATAATGGTTCAACACCCCCAGAAGGGGAGGTTCCCCCTC AGGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGATTTGGCATCAAGGCT TTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGT ACAGCACTCGACCAGTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTGCTG GTTGGCTTGCTGCTTTTCCTTTCTTTGAACCTCATTGGCAAATATGCATGGCTGGTGGCT TATCCACAGGATGGATTGAATGGGACGGAGAGCGGTTTGAATTTGAAAATGCTCCTTCTT ATTCAGAAAAGAACTGGGGTGCAGGTTTTCCGAGGAAGTGGTATTGGGTCCAGTGCAATG TCTTCTCAGGCGCATCTGGTGAAGTTGCATTAACGGCTGCTGGCGGATTAAGGAAAATTG GATTGGGCGAAACCTATGAAAGTCCTTCACTGATTGGAATTCATTATGAGGGAAAATTCT ATGAATTTGTGCCTTGGACCGGGACAGTGAGCTGGGACATTGCCCCTTGGGGTCACTGGA AGTTGTCCGGCGAGAACAAAAATCATCTGGTTGAAATAGAAGCAACCACAAAAGAACCAG GCACTGCTTTGCGAGCTCCAACCATGGAGGCTGGACTAGTGCCAGCATGCAAAGACACCT GCTATGGTGATCTGAGGCTGCAAATGTGGGAAAAGAGAAATGATGGTGGCAAGGGAAAGA TGATACTCGACGCAACAAGCAACATGGCGGCACTAGAAGTTGGTGGAGGCCCTTGGTTCA ATGGTTGGAAAGGCACGACTGTTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGG TCGATGTGGAGAGCCTCTTCCCTATCCCATTTCTCAAGCCCCCTGGTCTGTAGCATTGTT CAGGTCGAGCCATCGATAGGTAGAGATGAATAGGCCCTCCAATCTTGTCACACCTTGAGT CTTGATCTGTTCCTCACTTAGCATCATGTTTTCAGCCAGAGAACTACAGAAACAGTAAAC CAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCAT GTTGCACAAATTTTTACAGATCAGGAATGGATGCTGTAATTCAAGAAAATAAGTATAATT CATCTTAGGCAGTTCCATCCTTTTGTGCTCATCTGAACTTCTGAAGTATCATAAAGAAGT GATAGCTGGATGCCCGGGCCTGCATCTGCAATTGTGGAGGTCTTTCTGGTCAGAATTGGC TGGAAACAATTGTTGTTAGCACACTTCATATGGTAAATCTTTCAGAGGTACTGACAGACA AAGACGTGTGTTTTCAATTATCATTGTACTAACAAGGATACCAGTGGGCCTAACAGCACA TGACGGAAGTTCTAGCCTGTTGGCATAACATTGGATTATAGTATTACAAAGCTGAT



consensusID : consensus_12047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence
                              [AGCTCCTGCCCGCCCGCAGCATCAGCATGGACCTCGCCGCCGCCGCCGTGGCCGTCTCCTTCCCACGCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCGCTCCGCGCGCGGCCTCCTCCTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTACGCCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGCACGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAGAGCTTCTGCTTCATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAGATTCTTGGCGCCGATGA-TAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGATTTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGTACAGCACTCGACCAGTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTGCTGGTTGGCTTGCTGCTTTTCCTTTCTTT]

[+] EMBL CB685275             [AGCTCCTGCCCGCCCGCAGCATCAGCATGGACCTCGCCGCCGCCGCCGTGGCCGTCTCCTTCCCACGCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCGCTCCGCGCGCGGCCTCCTCCTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTACGCCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGCACGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAGAGCTTCTGCTTCATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAGATTCTTGGCGCCGATGA TAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGATTTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGTACAGCACTCGACCAGTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTGCTGGTTGGCTTGCTGCTTTTCCTTTCTTT]
[+] EMBL OSR15892A            [                                                                                                                                                                                                                                                                                                                      CATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTC GCGCGCAGATTCTTGGCGNCGATGACNAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTNACACCGATTTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGTACAGCACTCGACCAGTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTNCTGGTTGGCTTa                 ]


>consensus_12047#1 AGCTCCTGCCCGCCCGCAGCATCAGCATGGACCTCGCCGCCGCCGCCGTGGCCGTCTCCT TCCCACGCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCG CTCCGCGCGCGGCCTCCTCCTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTACG CCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGCA CGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAGA GCTTCTGCTTCATGTACTCTGTCGAGAACCCGTTGTTCCGAGATGGGATGAGTGATCTGG ATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAGATTCTTGGCGCCGATG ATAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGAATTTTCTAGT CGAGTTTTGGAAGGCTTCCAAGTGACACCGATTTGGCATCAAGGCTTTATACGTGATGAT GGAAGGTCAAAGTATGTGCCAAATGTCCAAACAGCTAGGTGGGAGTACAGCACTCGACCA GTATATGGCTGGGGTGATGTCACGTCAAAGCAGAAATCAACTGCTGGTTGGCTTGCTGCT TTTCCTTTCTTT



consensusID : consensus_12047#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 664
fasta sequence
                              [GTGAGCTGGGACATTNCCCCTTGGGNTCACTGGAAGTTGTCCGGCGAGAACAAAAATCATCTGGTTGAAATCGAAGCANCCACAAAAGACCCAGGCACTGCTTTCCGAGCTCCAACCATGGAGNCTGGACTAGTCCCAGCANGCAAAGACACCTGCTATGGTGATCTGAGGCTGCAAATGTGGGAAAAGAGAANTGATGGTGGCAAGGGAAAGATGATNCTCGACGCAACAAGCAACATGGCGGCACTAGAAGTTGGTGGAGNCCCTTGGTTCAATGGTTGGAAAGGCACGACTG-TTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATTTCTCAAGCCCCCTGGTCTGTAGCATTGTTCAGGTCGAGCCATCGATAGGTAGAGATGAATAGGCCCTCCAATCTTGTCACACCTTGAGTCTTGATCTGTTCCTCACTTAGCATCATGTTTTCAGCCAGAGAACTACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCATGTTGCACAAATTTTTACAGATCAGGAATGGATGCTGTAATTCAAGAAAATAAGTATAATTCATCTTAGGCAGTTCCATCCAAAAAAAAAA]

[+] EMBL AU031770             [GTGAGCTGGGACATTNCCCCTTGGGNTCACTGGAAGTTGTCCGGCGAGAACAAAAATCATCTGGTTGAAATCGAAGCANCCACAAAAGACCCAGGCACTGCTTTCCGAGCTCCAACCATGGAGNCTGGACTAGTCCCAGCANGCAAAGACACCTGCTATGGTGATCTGAGGCTGCAAATGTGGGAAAAGAGAANTGATGGTGGCAAGGGAAAGATGATNCTCGACGCAACAAGCAACATGGCGGCACTAGAAGTTGGTGGAGNCCCTTGGTTCAATGGTTGGAAAGGCACGACTG TTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATTTCTCAAGCCCCCTGGTCTGTAGCATTGTTCAGGTCGAGCCATCGATAGGTAGAGATGAATAGGCCCTCCAATCTTGTCACACCTTGAGTCTTGATCTGTTCCTCACTTAGCATCATGTTTTCAGCCAGAGAACTACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCATGTTGCACAAATTTTTACAGATCAGGAATGGATGCTGTAATTCAAGAAAATAAGTATAATTCATCTTAGGCAGTTCCATCCAAAAAAAAAA]
[+] EMBL BQ908729             [                                                                                                                                                                                                                                                                                                    CTGTTTTCAAACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATTTCTCAAGCCCCCTGGTCTGTAGCATTGTTCAGGTCGAGCCATCGATAGGTAGAGATGAATAGGCCCTCCAATCTTGTCACACCTTGAGTCTTGATCTGTTCCTCACTTAGCATCATGTTTTCAGCCAGAGAACTACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCATGTTGCACAAATTTTTACTGATCAGGAATGGATGCTGTAATTCAAGAAAATAAGTATAATTCATCTTAGGCAGTTCAA   AAAAAAA   ]


>consensus_12047#2 GTGAGCTGGGACATTNCCCCTTGGGNTCACTGGAAGTTGTCCGGCGAGAACAAAAATCAT CTGGTTGAAATCGAAGCANCCACAAAAGACCCAGGCACTGCTTTCCGAGCTCCAACCATG GAGNCTGGACTAGTCCCAGCANGCAAAGACACCTGCTATGGTGATCTGAGGCTGCAAATG TGGGAAAAGAGAANTGATGGTGGCAAGGGAAAGATGATNCTCGACGCAACAAGCAACATG GCGGCACTAGAAGTTGGTGGAGNCCCTTGGTTCAATGGTTGGAAAGGCACGACTGTTTCA AACGAGATTGTGAACAACGTTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATC CCATTTCTCAAGCCCCCTGGTCTGTAGCATTGTTCAGGTCGAGCCATCGATAGGTAGAGA TGAATAGGCCCTCCAATCTTGTCACACCTTGAGTCTTGATCTGTTCCTCACTTAGCATCA TGTTTTCAGCCAGAGAACTACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTT GGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCATGTTGCACAAATTTTTACAGATCAGGA ATGGATGCTGTAATTCAAGAAAATAAGTATAATTCATCTTAGGCAGTTCCATCCAAAAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12047#0      ------TGCCCGCCCGCAGCATCAGCATGGACCTCGCCGCCGCCGCCGTGGCCGTCTCCT 54
consensus_12047#1      AGCTCCTGCCCGCCCGCAGCATCAGCATGGACCTCGCCGCCGCCGCCGTGGCCGTCTCCT 60
consensus_12047#2      -------GTGAGCTGGGACATTNCCCCTTGGGNTCACTGGAAGTTGTCCGGCGAGAACAA 53
                              *   **  * *   *   * * *   ** * *          ***     *  

consensus_12047#0      TCCCACGCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCG 114
consensus_12047#1      TCCCACGCCCTGCTCCCCCGCCGCGCCGCTGCGCCCCACGCCGCCACCGCCGCGCCCTCG 120
consensus_12047#2      AA--ATCATCTGGTTGAAATCGAAGCANCCACAAAAGACCCAGGCACTGCTTT--CCGAG 109
                           *    *** *      *   **  *  *     ** * * *** **     **  *

consensus_12047#0      CTCCGCGCGCGGCCTCCTC-CTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTAC 173
consensus_12047#1      CTCCGCGCGCGGCCTCCTC-CTCCCCCTCCCCCTCCACGGCGGTGGCGGCGCCCGTCTAC 179
consensus_12047#2      CTCCAACCATGGAGNCTGGACTAGTCCCAGCANGCAAAGACACCTGCTATGGTGATCTGA 169
                       ****   *  **   *    **   **   *   * * * *    **   *    ***  

consensus_12047#0      GCCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGC 233
consensus_12047#1      GCCCCCACGCCGCGGGACCGGGCCCTGCGGACGCCGCACAGCGGGTATCACTATGACGGC 239
consensus_12047#2      GGCTGCAAATGTGGGAAAAGAGAANTGATGGTGGCAAGGGAAAGATGATNCT-CGACGCA 228
                       * *  **      ** *  * *   **  *  * *        * *    **  ****  

consensus_12047#0      ACGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAG 293
consensus_12047#1      ACGGCGAGGCCCTTCTTTGAGGGATGGTACTTCAAGGTGTCCATTCCCGAGTGCAGGCAG 299
consensus_12047#2      ACAA-GCAACATGGCGGCACTAGAAGTTGGTGGAGNCCCTTGGTTCAATGGTTGGAAAGG 287
                       **   *   *    *       ** * *  *  *     *   ***    **       *

consensus_12047#0      AGCTTCTGCTTCATGTACTCTGTCGAGAACC-CGTTGTTCCGAGATGGGATGAGTGATCT 352
consensus_12047#1      AGCTTCTGCTTCATGTACTCTGTCGAGAACC-CGTTGTTCCGAGATGGGATGAGTGATCT 358
consensus_12047#2      CACGACTGTTTCAA--ACGAGATTGTGAACAACGTTGTT----GGTACCCAGGTCGATGT 341
                         *  *** ****   **    * * ****  *******    * *     *   *** *

consensus_12047#0      GGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAG-ATTCTTGGCGCCG 411
consensus_12047#1      GGATCGGGTCATACATGGTTCGCGCTTCACTGGCGTCGGGGCGCAG-ATTCTTGGCGCCG 417
consensus_12047#2      GGAGAGCCTCTTCCCTATCCCATTTCTCAAGCCCCCTGGTCTGTAGCATTGTTCAGGTCG 401
                       ***  *  ** * * *    *     ***    *   **   * ** *** **   * **

consensus_12047#0      A-----TGATAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAGTAG 466
consensus_12047#1      A-----TGATAAGTACATATGCCAGTTCACCGAGAAATCCAATAACTTTTGGGGAAG--- 469
consensus_12047#2      AGCCATCGATAGGTAGAGATG--AATAGGCCCTCCAATCTTGTCACACCTTGAGTCTT-- 457
                       *      **** *** * ***  * *   **    ****   * **   * * *      

consensus_12047#0      GCATGAACTAATGCTCGGAAACACTTTCATTCCCAATAATGGTTCAACACCCCCAGAAGG 526
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      GGAGGTTCCCCCTCAGGAATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGAT 586
consensus_12047#1      -----------------AATTTTCTAGTCGAGTTTTGGAAGGCTTCCAAGTGACACCGAT 512
consensus_12047#2      -----------------GATCTGTTCCTCACTTAGCATCATGTTTTCA-GCCAGAGAACT 499
                                         ** *  *  **   *      * * ** ** *  * *    *

consensus_12047#0      TTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAAC 646
consensus_12047#1      TTGGCATCAAGGCTTTATACGTGATGATGGAAGGTCAAAGTATGTGCCAAATGTCCAAAC 572
consensus_12047#2      ACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGC-C 558
                          * * **       *  *   ***  *     **    *  **   * *    *   *

consensus_12047#0      AGCTAGGTGGGAGTACAGCACTCGA-CCAGTATATGGCTGGGGTGATGTCACGTCAAAGC 705
consensus_12047#1      AGCTAGGTGGGAGTACAGCACTCGA-CCAGTATATGGCTGGGGTGATGTCACGTCAAAGC 631
consensus_12047#2      TTTCGGGTGAAATCATGTTGCACAAATTTTTACAGATCAGGAATGG-ATGCTGTAATTCA 617
                            ****  *  *     * * *     ** *   * **  **   *   ** *    

consensus_12047#0      AGAAATCAACTGCTGGTTGGCTTGCTGCTTTTCCTTTCTTTGAACCTCATTGGCAAATAT 765
consensus_12047#1      AGAAATCAACTGCTGGTTGGCTTGCTGCTTTTCCTTTCTTT------------------- 672
consensus_12047#2      AGAAAATAAGTA-TAATTCATCTTAGGCAGTTCCATCCAAAAAAAAAA------------ 664
                       *****  ** *  *  **    *   **  **** * *                      

consensus_12047#0      GCATGGCTGGTGGCTTATCCACAGGATGGATTGAATGGGACGGAGAGCGGTTTGAATTTG 825
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      AAAATGCTCCTTCTTATTCAGAAAAGAACTGGGGTGCAGGTTTTCCGAGGAAGTGGTATT 885
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      GGGTCCAGTGCAATGTCTTCTCAGGCGCATCTGGTGAAGTTGCATTAACGGCTGCTGGCG 945
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      GATTAAGGAAAATTGGATTGGGCGAAACCTATGAAAGTCCTTCACTGATTGGAATTCATT 1005
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      ATGAGGGAAAATTCTATGAATTTGTGCCTTGGACCGGGACAGTGAGCTGGGACATTGCCC 1065
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      CTTGGGGTCACTGGAAGTTGTCCGGCGAGAACAAAAATCATCTGGTTGAAATAGAAGCAA 1125
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      CCACAAAAGAACCAGGCACTGCTTTGCGAGCTCCAACCATGGAGGCTGGACTAGTGCCAG 1185
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      CATGCAAAGACACCTGCTATGGTGATCTGAGGCTGCAAATGTGGGAAAAGAGAAATGATG 1245
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      GTGGCAAGGGAAAGATGATACTCGACGCAACAAGCAACATGGCGGCACTAGAAGTTGGTG 1305
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      GAGGCCCTTGGTTCAATGGTTGGAAAGGCACGACTGTTTCAAACGAGATTGTGAACAACG 1365
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      TTGTTGGTACCCAGGTCGATGTGGAGAGCCTCTTCCCTATCCCATTTCTCAAGCCCCCTG 1425
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      GTCTGTAGCATTGTTCAGGTCGAGCCATCGATAGGTAGAGATGAATAGGCCCTCCAATCT 1485
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      TGTCACACCTTGAGTCTTGATCTGTTCCTCACTTAGCATCATGTTTTCAGCCAGAGAACT 1545
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      ACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCT 1605
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      TTCGGGTGAAATCATGTTGCACAAATTTTTACAGATCAGGAATGGATGCTGTAATTCAAG 1665
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      AAAATAAGTATAATTCATCTTAGGCAGTTCCATCCTTTTGTGCTCATCTGAACTTCTGAA 1725
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      GTATCATAAAGAAGTGATAGCTGGATGCCCGGGCCTGCATCTGCAATTGTGGAGGTCTTT 1785
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      CTGGTCAGAATTGGCTGGAAACAATTGTTGTTAGCACACTTCATATGGTAAATCTTTCAG 1845
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      AGGTACTGACAGACAAAGACGTGTGTTTTCAATTATCATTGTACTAACAAGGATACCAGT 1905
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      GGGCCTAACAGCACATGACGGAAGTTCTAGCCTGTTGGCATAACATTGGATTATAGTATT 1965
consensus_12047#1      ------------------------------------------------------------
consensus_12047#2      ------------------------------------------------------------
                                                                                   

consensus_12047#0      ACAAAGCTGAT 1976
consensus_12047#1      -----------
consensus_12047#2      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)