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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1774 fasta sequence
[TTCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGCCGCCGCAGCAGCTGGTGCTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTATCTCGGGGTCTGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGCAAGGCAGTAACCAGCTTAGCATCGAGTACTGATGGACTTATATTGATCTCTGGATCTGAGGATGGTAATGTTCGAGTTTGGGATACAAGAACTCAGCAAGTAATCCGAAAATTCAAACATTCCCAAGGTCCAGTGACGAATGTTCTCTTAGTAACGCCTAAACGAGTAAATCTTCCACCACTACAATCACTACGGAAAGTTTGCTCAGCAAATGGAGGATCTGAATCACGGGCTGTAATTGTGCCCCAACCTGAAAATGATGTCCAAATTTTTGGAAACTTCAGTTCCGACTTTCTGGAGCGCTGCCTGGATGCACTT---CAGCCTGGCAGTTCGTCCAGATTGTTTGAATCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGACCTCTTTGTGCGTGAGGTTCTTG-ATCAGATG-CCGTCT-CCAAAGAATACATGATA-TGCA-ACTGATTATTATGGT-CATTGCTGTCAA-TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGAACTA-TTGTA-GCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCACCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATCTGAAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGGGTTAGGGAGTAATATCTTTGTATCTTGCTGCCGGGTGAACAAAAAGGGA]
[+] EMBL AK111780 [TTCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGCCGCCGCAGCAGCTGGTGCTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTATCTCGGGGTCTGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGCAAGGCAGTAACCAGCTTAGCATCGAGTACTGATGGACTTATATTGATCTCTGGATCTGAGGATGGTAATGTTCGAGTTTGGGATACAAGAACTCAGCAAGTAATCCGAAAATTCAAACATTCCCAAGGTCCAGTGACGAATGTTCTCTTAGTAACGCCTAAACGAGTAAATCTTCCACCACTACAATCACTACGGAAAGTTTGCTCAGCAAATGGAGGATCTGAATCACGGGCTGTAATTGTGCCCCAACCTGAAAATGATGTCCAAATTTTTGGAAACTTCAGTTCCGACTTTCTGGAGCGCTGCCTGGATGCACTT CAGCCTGGCAGTTCGTCCAGATTGTTTGAATCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGACCTCTTTGTGCGTGAGGTTCTTG ATCAGATG CCGTCT CCAAAGAATACATGATA TGCA ACTGATTATTATGGT CATTGCTGTCAA TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGAACTA TTGTA GCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCACCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATCTGAAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGG ]
[+] EMBL OS1006A [ GGTCCAGTGACGAATGTTCTCTTAGTAACGCCTAAACGAGTAAATCTTCCACCACTACAATCACTACGGAAAGTTTGCTCAGCAAATGGAGGATCTGAATCACGGGCTGTAATTGTGCCCCAACCTGAAAATGATGTCCAAATTTTTGGAAACTTCAGTTCCGACTTTCTGGAGCGCTGCCTGGATGCACTTCAGCAGCCTGGCAGTTCGTCCAGATTGTTTGAATCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGNGTTACAGGACCTCTTTGTGCGTGAGGTTCTTG ATCAGATG CCGTCT NCAAAGAATACATGATA TGCA ACTGATTATTATGGT CATTGCTGTCAA TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGGTTCTAACCGACTAGAAAACCTTGG AGGTCTAATTCATCAGCG AGTGTAACATCAA TTTTGCAAATTATGAGTGGAGGGGTGAGCAGGGGGC TTNAAT CCCCATG GGTCATGGG CTA TT NA GGTGG GCAA TTTAT CNNA TAGGNCTTCCGG CT AGGTCCT AAAG GNACTTgg ]
[+] EMBL C26985 [ AATNATGTCCAAATTTTTGGAAACTTCAGTTCCGACTTTTTGGAGCGNTGCCTGGATGCACTT CAGNCTGGCAGTTCGTCCAGATTGTTTGANTCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGACCTCTTTNTGCGTGAGGTTCTTG ATCAGATG CCGTCT CCAAAGANTACATGATA TGCA ACTGATTATNATGGT CATTGCTGTCAA TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCG AGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGGACTATTTGTAGGCTGGNGCAAATTTTATAC ]
[-] EMBL CB653209 [ AGATTGTTTGAATCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGACCTCTTTGTGCGTGAGGTTCTTG ATCAGATG CCGTCT CCAAAGAATACATGATA TGCA ACTGATTATTATGGT CATTGCTGTCAA TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGAGTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGAACTA TTGTA GCTGGAGCAAATTTTATAGTAATTAGCATTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCACCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATGTGAAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGGGTTAGGGAGTAATATCTTTGTATCTTGCTGCCGGGTGAACAAAAAGGGA]
[+] EMBL C98193 [ TTCTTGAACCAGATGCCCGTCTCCCAAAGAATACATGATATTGCANCCTGNTTATTATGGTCCATTGNTGTCAATTTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGAACTA TTGTA GCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCACCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAA ]
consensusID : consensus_12048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1037 fasta sequence
[TCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGCCGCCGCAGCAGCTGGTGTTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTGTCTCGGGGTCTGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGGTTTGCCTACTCCTTGCTTTCATTAGCACCTCTTATTTATCCTGTGATGTAAACAGCTTCAATATACAAGTTAGAGTTTGATATCTTGTAGTAGTAGAGTGGTTATAAACCTATCTTACCTGTTCATGCTTTAACTTTGGTTGTATCCATCCTAGCTCGACCAGTTTGTTTTTAATGAAAACAT]
[+] EMBL AK108466 [TCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGCCGCCGCAGCAGCTGGTGTTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTGTCTCGGGGTCTGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGGTTTGCCTACTCCTTGCTTTCATTAGCACCTCTTATTTATCCTGTGATGTAAACAGCTTCAATATACAAGTTAGAGTTTGATATCTTGTAGTAGTAGAGTGGTTATAAACCTATCTTACCTGTTCATGCTTTAACTTTGGTTGTATCCATCCTAGCTCGACCAGTTTGTTTTTAATGAAAACAT]
consensusID : consensus_12048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[GACCTTCACTTCCGCCCTTTTGGAGCCCTAGCCTGGATGCACTTCAGCCTGGCAGTTGGTCCAAATTGTTTAAATCTGGGGGCCAGGGCTCTGTATGGTGCCCCAAAACACCAGGGTGTAGAATGGAGGAGTAAATCCTTGGAGTTACCGGGCCTTTTTGTGCGTGAGGTTTTTGATCAGATGCCGTCTCCAAAGAATACCTGATATGCAACTGATTCTTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCTGAGTTCATTGGAACTATTCTAGCTGGAGCAAATTTTATACTAATTAGCCCTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGGAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGGGTTATGGAGTAATATCTTTGTATCTTGCTACAGAGTAATTATATTCGATGGAAACTACTTTGTGTGGATCCAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760676 [GACCTTCACTTCCGCCCTTTTGGAGCCCTAGCCTGGATGCACTTCAGCCTGGCAGTTGGTCCAAATTGTTTAAATCTGGGGGCCAGGGCTCTGTATGGTGCCCCAAAACACCAGGGTGTAGAATGGAGGAGTAAATCCTTGGAGTTACCGGGCCTTTTTGTGCGTGAGGTTTTTGATCAGATGCCGTCTCCAAAGAATACCTGATATGCAACTGATTCTTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCTGAGTTCATTGGAACTATTCTAGCTGGAGCAAATTTTATACTAATTAGCCCTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGGAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGGGTTATGGAGTAATATCTTTGTATCTTGCTACAGAGTAATTATATTCGATGGAAACTACTTTGTGTGGATCCAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12048#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence
[AGGTCATAAGGGCCCCCCCCAGGGGGGGAGGTGTAATCCCGGGGGGGACGGTGCCCCCCCTAAAGGTGATGTCCGAGTTTGGGAAACTTCAGGTCGGCTGTTGCGGGGGCGCCCGGATGCATTTAAGGCTGCCAGTTCGTCCAGATTGTTGAATCTGGGGCCCAGTGCTCTGTATGGTGCCCCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGGCCTCTTTGTGCGTGAGATTCTTGATCAGAAGCCGTCTCCAAAGAATACCTGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCCCATGAGTTGGTTTTTAACCGACTAGAAAACCTTGGAAGCTTTAATTTATCAGCGAAGTGTAACATCAATTTTTGCAATTTTTGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCATGAGTTCATTGGAACTATTTTAGCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGAAATACAAAGTAACTTGAAAAAAAAAAAAAA]
[-] EMBL CA761480 [AGGTCATAAGGGCCCCCCCCAGGGGGGGAGGTGTAATCCCGGGGGGGACGGTGCCCCCCCTAAAGGTGATGTCCGAGTTTGGGAAACTTCAGGTCGGCTGTTGCGGGGGCGCCCGGATGCATTTAAGGCTGCCAGTTCGTCCAGATTGTTGAATCTGGGGCCCAGTGCTCTGTATGGTGCCCCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGGCCTCTTTGTGCGTGAGATTCTTGATCAGAAGCCGTCTCCAAAGAATACCTGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCCCATGAGTTGGTTTTTAACCGACTAGAAAACCTTGGAAGCTTTAATTTATCAGCGAAGTGTAACATCAATTTTTGCAATTTTTGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCATGAGTTCATTGGAACTATTTTAGCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGAAATACAAAGTAACTTGAAAAAAAAAAAAAA]
[-] EMBL CA761442 [AGGTCATAAGGGCCCCCCCCAGGGGGGGAGGTGTAATCCCGGGGGGGACGGTGCCCCCCCTAAAGGTGATGTCCGAGTTTGGGAAACTTCAGGTCGGCTGTTGCGGGGGCGCCCGGATGCATTTAAGGCTGCCAGTTCGTCCAGATTGTTGAATCTGGGGCCCAGTGCTCTGTATGGTGCCCCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGGCCTCTTTGTGCGTGAGATTCTTGATCAGAAGCCGTCTCCAAAGAATACCTGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCCCATGAGTTGGTTTTTAACCGACTAGAAAACCTTGGAAGCTTTAATTTATCAGCGAAGTGTAACATCAATTTTTGCAATTTTTGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCATGAGTTCATTGGAACTATTTTAGCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGAAATACAAAGTAACTTGAAAAAAAAAAAAAA]
consensusID : consensus_12048#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[ACGAGCTCGTGCCGAATTCNGCNGAAAGANGGGTGAGCATGGGGNTTTGCATCCCCATGAGTTCATNGGNAACTATTCTACCTGGAGCAAATTTTATNCTAATTATCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTNGTGCTTCTCTGGTTCCANCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGANCCNTATNGTAGGTNACATGTTACNGAAAAACATCTGAAATACAAAGTAACTTGAAAAAAAAA]
[+] EMBL BE228997 [ACGAGCTCGTGCCGAATTCNGCNGAAAGANGGGTGAGCATGGGGNTTTGCATCCCCATGAGTTCATNGGNAACTATTCTACCTGGAGCAAATTTTATNCTAATTATCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTNGTGCTTCTCTGGTTCCANCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGANCCNTATNGTAGGTNACATGTTACNGAAAAACATCTGAAATACAAAGTAACTTGAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 TTCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACAC 60
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 ACCATGGCGCCGCCGCAGCAGCTGGTGCTCGCGGCCTCTTCCACCGACGCCGGCGTTGCC 120
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 GCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCC 180
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 CGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAAC 240
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 TCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCG 300
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 GTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGG 360
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 ATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCAT 420
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 GCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTATCTCGGGGTCT 480
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 GAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTG 540
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 GAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTT 600
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 GCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGG 660
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 AGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTG 720
consensus_12048#1 ------------------------------------------------------------
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 GCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTT 780
consensus_12048#1 ---------------------------------------------------TCTCCCACG 9
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 ACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCT 840
consensus_12048#1 CGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGC 69
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 TTGGATGACCATAGCAAGGCAGTAACCAGCTTAGCATCGAGTACTGATGGACTTATATTG 900
consensus_12048#1 CGCCGCAGCAGCTGGTGTTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACC 129
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 ATCTCTGGATCTGAGGATGGTAATGTTCGAGTTTGGGATACAAGAACTCAGCAAGTAATC 960
consensus_12048#1 TCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCA 189
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 CGAAAATTCAAACATTCCCAAGGTCCAGTGACGAATGTTCTCTTAGTAACGCCTAAACGA 1020
consensus_12048#1 CCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCA 249
consensus_12048#3 -------------------------AGGTCATAAGGGCCCCCCCCAGGGGGGGAGGTGTA 35
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ------------------------------------------------------------
consensus_12048#0 GTAAATCTTCCACCACTACAATCACTACGGAAAGTTTGCTCAGCAAATGGAGGATCTGAA 1080
consensus_12048#1 TCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGA 309
consensus_12048#3 ATCCCGGGGGGGACGGTGCCCCC-CCTAAAGGTGATGTCCGAGTTTG-GGAAACTTCAGG 93
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 --------------------------------------------------GACCTTCACT 10
consensus_12048#0 TCACGGGCTGTAATTGTGCCCCAACCTGAAAATGATGTCCAAATTTTTGGAAACTTCAGT 1140
consensus_12048#1 TACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCG 369
consensus_12048#3 TCGGCTGTTGCGGGGGC---GCCCGGATGCATTTAAGGCTGCCAGTTCGTCCAGATTGTT 150
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 TCCGCCCTTTTGGAGCCCTAGCCTGGATGCACTTCAGCCTGGCAGTTGGTCCAAATTGTT 70
consensus_12048#0 TCCGACTTTCTGGAGCGCT-GCCTGGATGCACTTCAGCCTGGCAGTTCGTCCAGATTGTT 1199
consensus_12048#1 ACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATC 429
consensus_12048#3 -GAATCTGGGGCCCAGTGCTCTGTATGGTGCCCCAAAACAACAGGGTGTAGAATGGAGGA 209
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 TAAATCTGGGGGCCAGGGCTCTGTATGGTGCCCCAAAACACCAGGGTGTAGAATGGAGGA 130
consensus_12048#0 TGAATCTGGGG-CCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGA 1258
consensus_12048#1 GTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTGTCTCGGGGTCTGAAGACGGTA 489
consensus_12048#3 GTAAATACTTGGAGTTACAGGGCCTCTTTGTGCGTGAGATTCTTGATCAGAAGCCGTCTC 269
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 GTAAATCCTTGGAGTTACCGGGCCTTTTTGTGCGTGAGGTTTTTGATCAGATGCCGTCTC 190
consensus_12048#0 GTAAATACTTGGAGTTACAGGACCTCTTTGTGCGTGAGGTTCTTGATCAGATGCCGTCTC 1318
consensus_12048#1 GCA-----TCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGC 544
consensus_12048#3 CAAAGAATACCTGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGA--GATTG 327
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 CAAAGAATACCTGATATGCAACTGATTCTTATGGTCATTGCTGTCAATTAGGA--GATTG 248
consensus_12048#0 CAAAGAATACATGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGA--GATTG 1376
consensus_12048#1 AAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTG 604
consensus_12048#3 TCATCA-GTTTTAGCCAGCCCATGAGTTGGTTTTTAACCGACTAGAAAACCTTGGAAGCT 386
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 TCATCA-GTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCT 307
consensus_12048#0 TCATCA-GTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCT 1435
consensus_12048#1 CTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCT 664
consensus_12048#3 TTAATTTATCAGCGAAGTGTAACATCAATTTTTGCAATTTTTGAGTGGAGGGGTGAGCAG 446
consensus_12048#4 --------------------ACGAGCTCGTGCCGAATTCNGCNGAAAGANGGGTGAGCAT 40
consensus_12048#2 CTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAG 367
consensus_12048#0 CTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAG 1495
consensus_12048#1 ATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTT 724
* ***
consensus_12048#3 GGGGCTTTGCATCCCC-ATGAGTTCATTGGAA-CTATTTTAGCTGGAGCAAATTTTATAC 504
consensus_12048#4 GGGGNTTTGCATCCCC-ATGAGTTCATNGGNAACTATTCTACCTGGAGCAAATTTTATNC 99
consensus_12048#2 GGGGCTTTGCATCCCC-CTGAGTTCATTGGAA-CTATTCTAGCTGGAGCAAATTTTATAC 425
consensus_12048#0 GGGGCTTTGCATCCCCCATGAGTTCATTGGAA-CTATTGTAGCTGGAGCAAATTTTATAC 1554
consensus_12048#1 AGACCCAAGGAGTCATATTTTCTACGCTGG----TGGTCGAGATGGAAAGATATATGTTA 780
* * * * * * * ** * * * **** * * * *
consensus_12048#3 TAATTAGCACTTCCGGCCTCAGCTCCTCAAA-AGTG-TACTTTGTGCTTCTCTGGTTCCC 562
consensus_12048#4 TAATTATCACTTCCGGCCTCAGCTCCTCAAA-AGTG-TACTTNGTGCTTCTCTGGTTCCA 157
consensus_12048#2 TAATTAGCCCTTCCGGCCTCAGCTCCTCAAA-AGTG-TACTTTGTGCTTCTCTGGTTCCC 483
consensus_12048#0 TAATTAGCACTTCCGGCCTCAGCTCCTCAAA-AGTG-TACTTTGTGCTTCTCTGGTTCCA 1612
consensus_12048#1 CTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTT 840
** * *** *** * * **** * ** * *** *
consensus_12048#3 CCCCTGAATTTATGTGTACTTTGTGTCT--TTGTATTGAGCCTTATGGTAGGTAACATGT 620
consensus_12048#4 NCACTGAATTTATGTGTACTTTGTGTCT--TTGTATTGANCCNTATNGTAGGTNACATGT 215
consensus_12048#2 CCCCTGAATTTATGTGTACTTTGTGTCT--TTGTATTGAGCCTTATGGTAGGTAACATGT 541
consensus_12048#0 CCACTGAATTTATGTGTACTTTGTGTCT--TTGTATTGAGCCTTATGGTAGGTAACATGT 1670
consensus_12048#1 TGGATGACCATAGGTTTGCCTACTCCTTGCTTTCATTAGCACCTCT--TATTTATCCTGT 898
*** ** ** * * * * * ** *** * * * ** * * ***
consensus_12048#3 TACAGAAAAACATTTGAAATACAAAGTAA--CTTGAAAAAAAAAAAAAA----------- 667
consensus_12048#4 TACNGAAAAACATCTGAAATACAAAGTAA--CTTGAAAAAAAAA---------------- 257
consensus_12048#2 TACAGAAAAACATTTGGAATACAAAGTAA--CTTGAAAAGGAGCGAGACGCAAGTGGGTT 599
consensus_12048#0 TACAGAAAAACATCTGAAATACAAAGTAA--CTTGAAAAGGAGCGAGACGCAAGTGGGTT 1728
consensus_12048#1 GATGTAAACAGCTTCAATATACAAGTTAGAGTTTGATATCTTGTAGTAGTAGAGTGGTTA 958
* *** * * ****** ** **** *
consensus_12048#3 ------------------------------------------------------------
consensus_12048#4 ------------------------------------------------------------
consensus_12048#2 ATGGAGTAATATCTTTGTATCTTGCTACAGAGTAATTATATTCGATGGAAACTACTTTGT 659
consensus_12048#0 AGGGAGTAATATCTTTGTATCTTGCTGCCGGGTGAACAAAAAGGGA-------------- 1774
consensus_12048#1 TAAACCTATCTTACCTGTTCATGCTTTAACTTTGGTTGTATCCATCCTAGCTCGACCAGT 1018
consensus_12048#3 ------------------------------
consensus_12048#4 ------------------------------
consensus_12048#2 GTGGATCCAAAAAAAAAAAAAAAAAAAAAA 689
consensus_12048#0 ------------------------------
consensus_12048#1 TTGTTTTTAATGAAAACAT----------- 1037
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||