cluster # 12051

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12051 cluster # 12051 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12051#0 length = 2298 sequences # 8

consensus_12051#1 length = 821 sequences # 1
consensus_12051#2 length = 531 sequences # 1

consensusID : consensus_12051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2298
fasta sequence

                              [CACTCGGTCACGCCTCGCAGCCCGCATCCCATCCCATCGCATCGCGTCGCACCGCACCGCACCGCAACCCGCCCAAACCCTAACCCTCGCGCCATCTCGTCCTCGCCGGCGTGCTCCGCCGCCGCCGCCATGTCCGCCAGGCTGCTCCGGCGAGTGCTCCAGGAGCGGGAGACCGCCCCGCAGGACCCTGCCGCCGCCGCCGCCGCCGCAGAGGTCGAGCGGGAGGAGGAGGAGGAGGCCTCCCCTCCCCGTGTCGCCGCCAGGAACCCCTTCGATCTCCTCGACGAAGAGGAGGAGGAAGAGGAGGAGAAGGAAGATGAAGTGTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAACATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAAAAGAAGAAAAAGAGCAAGGCAGACAAACAAGTGTCAACAAAGTCAAGGGATGAAAAGTCACTGGATTCAATTCTGGAAGATTTATCTATTGAAAAGAAGCCCATGCAGCAAAGAGTTAATCAAAATGAAAGAGCATCTGGGAAGGAGATTGAGATAGATGAAACCACTCCTGGGACATCATCTATTCTCTCAATTGATCCCAAACATCTAAAAGCTGAAAATGAGATGAGGCGCATTTTTGGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCAAGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCATCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGTGGTTTCAACTATTTCAGGTACATATATGATCCTTCTGTCAGTCATGTGCAAGACTTGTTTGAAGTTGCCAAATCTGCAAATGATCTCAATGCTATTGCAGCTATATTAGCAAAGTACCCTTATCACCCAGAATCATTGTTAACATTTGCTGAACTTTTCAAATATTCTGGAGAACATCAATCGTCAGCAGATGCTGTTGAGAAGTGTCTATTTGCTCTGGAGTGTGCTTGGCATCCATTGTTTAGCCCACTGCACAGCAACTGCCAGCTGAAATATAGCCATGACACAAACAAGCCATTCTTTACTGCGCTTTTTAGTCACATGAAAAATTTGGATAGACGTGGCTGCCATCGGTCTGCTTTAGAGGTCTGCAAATTCCTTCTTTCATTGGATTCTGATGATCCAAAGGGTGCTCTATTCTGCATTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGTTGGAACAGTTTGCAGAAGAGTACCAGTGTGATAACTCCTTGTGGTTATTCCCTAATTTCTCATTTTCCCTTGCCATTGCACGGTTCTACGTTGAGCGTGATGCAACAAATGGGGAGGCTTCTGACCATTCTGACAAGTCAACATCTGTAGATCTCATGAAGCAAGCATTGATGCTTCATCCTTTGGTGCTGCGCAAGATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTC-TTTGGATCAGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTA-GCATATATGTTGAACGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTTTTGGTGATTGAATCACTAAAACAGGATAACAGAGAGGCCCAGGACTGGGCATGTGTTAGAAAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTCCGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGG-TTGCT-CCTGG-AATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCAC-TGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCCAAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAA-TTGCACCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAATTGCTGTCAATCATTGTATCACCTTCACACTCTCAAGCAACAATCATCAGAAACTAGTGCTCTAGTACTTTTCATGGTTTCGGCATACATGTATAGCTGATCCACCAAAATCTAAATCGCTGAAATATTAAGTCAATTTTGGGCCTGGAAACATGAGAGATCAATGTGT]

[+] EMBL AU222656             [CACTCGGTCACGCCTCGCAGCCCGCATCCCATCCCATCGCATCGCGTCGCACCGCACCGCACCGCAACCCGCCCAAACCCTAACCCTCGCGCCATCTCGTCCTCGCCGGCGTGCTCCGCCGCCGCCGCCATGTCCGCCAGGCTGCTCCGGCGAGTGCTCCAGGAGCGGGAGACCGCCCCGCAGGACCCTGCCGCCGCCGCCGCCGCCGCAGAGGTCGAGCGGGAGGAGGAGGAGGAGGCCTCCCCTCCCCGTGTCGCCGCCAGGAACCCCTTCGATCTCCTCGACGAAGAGGAGGAGGAAGAGGAGGAGAAGGAAGATGAAGTGTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAACATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK102371             [                        CATCCCATCCCATCGCATCGCGTCGCACCGCACCGCACCGCAACCCGCCCAAACCCTAACCCTCGCGCCATCTCGTCCTCGCCGGCGTGCTCCGCCGCCGCCGCCATGTCCGCCAGGCTGCTCCGGCGAGTGCTCCAGGAGCGGGAGACCGCCCCGCAGGACCCTGCCGCCGCCGCCGCCGCCGCAGAGGTCGAGCGGGAGGAGGAGGAGGAGGCCTCCCCTCCCCGTGTCGCCGCCAGGAACCCCTTCGATCTCCTCGACGAAGAGGAGGAGGAAGAGGAGGAGAAGGAAGATGAAGTGTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAACATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAAAAGAAGAAAAAGAGCAAGGCAGACAAACAAGTGTCAACAAAGTCAAGGGATGAAAAGTCACTGGATTCAATTCTGGAAGATTTATCTATTGAAAAGAAGCCCATGCAGCAAAGAGTTAATCAAAATGAAAGAGCATCTGGGAAGGAGATTGAGATAGATGAAACCACTCCTGGGACATCATCTATTCTCTCAATTGATCCCAAACATCTAAAAGCTGAAAATGAGATGAGGCGCATTTTTGGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCAAGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCATCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGTGGTTTCAACTATTTCAGGTACATATATGATCCTTCTGTCAGTCATGTGCAAGACTTGTTTGAAGTTGCCAAATCTGCAAATGATCTCAATGCTATTGCAGCTATATTAGCAAAGTACCCTTATCACCCAGAATCATTGTTAACATTTGCTGAACTTTTCAAATATTCTGGAGAACATCAATCGTCAGCAGATGCTGTTGAGAAGTGTCTATTTGCTCTGGAGTGTGCTTGGCATCCATTGTTTAGCCCACTGCACAGCAACTGCCAGCTGAAATATAGCCATGACACAAACAAGCCATTCTTTACTGCGCTTTTTAGTCACATGAAAAATTTGGATAGACGTGGCTGCCATCGGTCTGCTTTAGAGGTCTGCAAATTCCTTCTTTCATTGGATTCTGATGATCCAAAGGGTGCTCTATTCTGCATTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGTTGGAACAGTTTGCAGAAGAGTACCAGTGTGATAACTCCTTGTGGTTATTCCCTAATTTCTCATTTTCCCTTGCCATTGCACGGTTCTACGTTGAGCGTGATGCAACAAATGGGGAGGCTTCTGACCATTCTGACAAGTCAACATCTGTAGATCTCATGAAGCAAGCATTGATGCTTCATCCTTTGGTGCTGCGCAAGATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTC TTTGGATCAGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTA GCATATATGTTGAACGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTTTTGGTGATTGAATCACTAAAACAGGATAACAGAGAGGCCCAGGACTGGGCATGTGTTAGAAAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTCCGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGG TTGCT CCTGG AATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCAC TGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCCAAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAA TTGCACCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAATTGCTGTCAATCATTGTATCACCTTCACACTCTCAAGCAACAATCATCAGAAACTAGTGCTCTAGTACTTTTCATGGTTTCGGCATACATGTATAGCTGATCCACCAAAATCTAAATCGCTGAAATATTAAGTCAATTTTGGGCCTGGAAACATGAGAGATCAATGTGT]
[+] EMBL AU070797             [                                                                                                                                                                                                                                                                                                                                   GTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAACATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF304300             [                                                                                                                                                                                                                                                                                                                                              AACCTGTGAGTTACAACGAACAGAAACATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAAAAGAAGAAAAAGAGCAAGGCAGACAAACAAGTGTCAACAAAGTCAAGGGATGAAAAGTCACTGGATTCAATTCTGGAAGATTTATCTATTGAAAAGAAGCCCATGCAGCAAAGAGTTAATCAAAATGAAAGAGCATCTGGGAAGGAGATTGAGATAGATGAAACCACTCCTGGGACATCATCTATTCTCTCAATTGATCCCAAACATCTAAAAGCTGAAAATGAGATGAGGCGCATTTTTGGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCAAGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCATCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGTGGTTTCAACTATTTCAGGTACATATATGATCCTTCTGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB636469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAAAGCTGAAAATGAGATGAGGCGCATTTTTGGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCAAGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCATCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGTGGTTTCAACTATTTCAGGTACATATATGATCCTTCTGTCAGTCATGTGCAAGACTTGTTTGAAGTTGCCAAATCTGCAAATGATCTCAATGCTATTGCAGCTATATTAGCAAAGTACCCTTATCACCCAGAATCATTGTTAACATTTGCTGAACTTTTCAAATATTCTGGAGAACATCAATCGTCAGCAGATGCTGTTGAGAAGTGTCTATTTGCTCTGGAGTGTGCTTGGCATCCATTGTTTAGCCCACTGCACAGCAACTGCCAGCTGAAATATAGCCATGACACAAACAAGCCATTCTTTACTGCGCTTTTTAGTCACATGAAAAATTTGGATAGACGTGGCTGCCATCGGTCTGCTTTAGAGGTCTGCAAATTCCTTCTTTCATTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C26471               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTGCCATCGGTCTGCTTTAGAGGTCTGCAAATTCCTTCTTTCATTGGATTCTGATGATCCAAAGGGTGCTCTATTCTGCATTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGTTGGAACAGTTTGCAGAAGAGTACCAGTGTGATAACTCCTTGTGGTTATTCCCTAATTTCTCATTTTCCCTTGCCATTGCACGGTTCTACGTTGAGCGTGATGCAACAAATGGGGAGGCTTCTGACCATTCTGACAAGTCAACATCTGTAGATCTCATGAAGCAAGCATTGATGCTTCATCCTTTGGTGCTGCGCAAGATTGTTGACAAGGCTCCTTTGAAAGACTNCTCGTGGACCCAAATACTCAGGAATGTGTTCTTTTGGATCAGCAAAGCCAGGAAGCCCTTNCCTTGAGCATATGATTAGGCATATATGTTGACCGCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB636470             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATCACTCCCCCCTGAAGAATTGCGGCCATTCATGG TTGCT CCTGG AATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCAC TGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCCAAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAA TTGCACCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAATTGCTGTCAATCATTGTATCACCTTCACACTCTCAAGCAACAATCATCAGAAACTAGTGCTCTAAGA TTTTCATGGTTTCGGCATACATGAATAGC                                                                        ]
[+] EMBL BI812367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGGTTTGCTCCCTGGAAATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACATGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACC AAACAATGATGACTGATTCAACCCGAAGCACCAAGGGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAAGTTGCACCCATGTGCTTTCCTGTCTCTATGATGATTAACAC AATTGCTGTCAATCATTGTATCACCTTCACACTCTCAAGCAACAATCATCAGAAACTAGTGCTCTAGTACTTTTCATGGTTTCGGCATACATGTATAGCTGATCCACCAAAATCTAAATCGCTGAAATATTAAGTCAATTTTGGGTCTGGAAAaaaaaa            ]




>consensus_12051#0
CACTCGGTCACGCCTCGCAGCCCGCATCCCATCCCATCGCATCGCGTCGCACCGCACCGC
ACCGCAACCCGCCCAAACCCTAACCCTCGCGCCATCTCGTCCTCGCCGGCGTGCTCCGCC
GCCGCCGCCATGTCCGCCAGGCTGCTCCGGCGAGTGCTCCAGGAGCGGGAGACCGCCCCG
CAGGACCCTGCCGCCGCCGCCGCCGCCGCAGAGGTCGAGCGGGAGGAGGAGGAGGAGGCC
TCCCCTCCCCGTGTCGCCGCCAGGAACCCCTTCGATCTCCTCGACGAAGAGGAGGAGGAA
GAGGAGGAGAAGGAAGATGAAGTGTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAA
CATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAA
AAGAAGAAAAAGAGCAAGGCAGACAAACAAGTGTCAACAAAGTCAAGGGATGAAAAGTCA
CTGGATTCAATTCTGGAAGATTTATCTATTGAAAAGAAGCCCATGCAGCAAAGAGTTAAT
CAAAATGAAAGAGCATCTGGGAAGGAGATTGAGATAGATGAAACCACTCCTGGGACATCA
TCTATTCTCTCAATTGATCCCAAACATCTAAAAGCTGAAAATGAGATGAGGCGCATTTTT
GGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCA
AGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCA
TCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGT
GGTTTCAACTATTTCAGGTACATATATGATCCTTCTGTCAGTCATGTGCAAGACTTGTTT
GAAGTTGCCAAATCTGCAAATGATCTCAATGCTATTGCAGCTATATTAGCAAAGTACCCT
TATCACCCAGAATCATTGTTAACATTTGCTGAACTTTTCAAATATTCTGGAGAACATCAA
TCGTCAGCAGATGCTGTTGAGAAGTGTCTATTTGCTCTGGAGTGTGCTTGGCATCCATTG
TTTAGCCCACTGCACAGCAACTGCCAGCTGAAATATAGCCATGACACAAACAAGCCATTC
TTTACTGCGCTTTTTAGTCACATGAAAAATTTGGATAGACGTGGCTGCCATCGGTCTGCT
TTAGAGGTCTGCAAATTCCTTCTTTCATTGGATTCTGATGATCCAAAGGGTGCTCTATTC
TGCATTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGTTGGAACAGTTTGCAGAA
GAGTACCAGTGTGATAACTCCTTGTGGTTATTCCCTAATTTCTCATTTTCCCTTGCCATT
GCACGGTTCTACGTTGAGCGTGATGCAACAAATGGGGAGGCTTCTGACCATTCTGACAAG
TCAACATCTGTAGATCTCATGAAGCAAGCATTGATGCTTCATCCTTTGGTGCTGCGCAAG
ATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTC
TTTGGATCAGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAA
CGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTT
TTGGTGATTGAATCACTAAAACAGGATAACAGAGAGGCCCAGGACTGGGCATGTGTTAGA
AAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTCC
GACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAATG
GCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCC
CGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTT
GACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCCA
AAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCACCCATGTGC
TTTCCTGTCTCTATGATGATTAACACAAATTGCTGTCAATCATTGTATCACCTTCACACT
CTCAAGCAACAATCATCAGAAACTAGTGCTCTAGTACTTTTCATGGTTTCGGCATACATG
TATAGCTGATCCACCAAAATCTAAATCGCTGAAATATTAAGTCAATTTTGGGCCTGGAAA
CATGAGAGATCAATGTGT

consensusID : consensus_12051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 821
fasta sequence

                              [CGAGACAAGGGGATCTCATGAAGCAAGCATTGATGCTTATCCTTTGGTGCTGCGCAAGATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTCTTTGGATCGGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAACGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTTTTGGTGATTGGATCACTAAAACAGGATAACAGGAGAGGCCCAGGACTGGGCATGTGTTAGAAAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTCCGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCCAAAGCACCAAGGGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCACCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAAATTGCTGTCAATCATTGTATCACCTTCACACTCTCAAGCAACAATCATCAGAAACTAGNGCTCTAGNACTTTTTNATGGGTTTCGGCATACATGTNTAAGCTGATCCACCCAAAATCTAAATCGCTGAAAAAT]

[+] EMBL CA767385             [CGAGACAAGGGGATCTCATGAAGCAAGCATTGATGCTTATCCTTTGGTGCTGCGCAAGATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTCTTTGGATCGGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAACGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTTTTGGTGATTGGATCACTAAAACAGGATAACAGGAGAGGCCCAGGACTGGGCATGTGTTAGAAAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTCCGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCCAAAGCACCAAGGGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCACCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAAATTGCTGTCAATCATTGTATCACCTTCACACTCTCAAGCAACAATCATCAGAAACTAGNGCTCTAGNACTTTTTNATGGGTTTCGGCATACATGTNTAAGCTGATCCACCCAAAATCTAAATCGCTGAAAAAT]




>consensus_12051#1
CGAGACAAGGGGATCTCATGAAGCAAGCATTGATGCTTATCCTTTGGTGCTGCGCAAGAT
TGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTCTT
TGGATCGGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAACG
CCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTTTT
GGTGATTGGATCACTAAAACAGGATAACAGGAGAGGCCCAGGACTGGGCATGTGTTAGAA
AAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTCCG
ACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAATGG
CACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCC
GTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTG
ACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCCAA
AGCACCAAGGGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCACCCATGTGCT
TTCCTGTCTCTATGATGATTAACACAAAATTGCTGTCAATCATTGTATCACCTTCACACT
CTCAAGCAACAATCATCAGAAACTAGNGCTCTAGNACTTTTTNATGGGTTTCGGCATACA
TGTNTAAGCTGATCCACCCAAAATCTAAATCGCTGAAAAAT

consensusID : consensus_12051#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [GGCCCAGGANTGGGCATGTGTTAGAAAAGAAGCATTNTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTNTCCGACACAACACCATNACTCCCCCCTGAAGAATTGCGNCCATTCATGGTTGCTCCTGGAATGGCACATGAGATGCCGCCAGNTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGNCCAAAACAATGATGACTGATTCAACCCAAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCNCCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAATTGCTGTCAATCATTGTATCNCCTTCACACTNTCAAGCNACAATCATCAGAAACTAGTGCTCTAGTACTTTTCATGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU092320             [GGCCCAGGANTGGGCATGTGTTAGAAAAGAAGCATTNTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTNTCCGACACAACACCATNACTCCCCCCTGAAGAATTGCGNCCATTCATGGTTGCTCCTGGAATGGCACATGAGATGCCGCCAGNTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGNCCAAAACAATGATGACTGATTCAACCCAAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCNCCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAATTGCTGTCAATCATTGTATCNCCTTCACACTNTCAAGCNACAATCATCAGAAACTAGTGCTCTAGTACTTTTCATGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12051#2
GGCCCAGGANTGGGCATGTGTTAGAAAAGAAGCATTNTCTTCAGATAAGAATGAGTACTC
TCATCTTCTTGTTTCAGACTTNTCCGACACAACACCATNACTCCCCCCTGAAGAATTGCG
NCCATTCATGGTTGCTCCTGGAATGGCACATGAGATGCCGCCAGNTGAACAAGAACTGGG
GATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTT
CCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGNCCA
AAACAATGATGACTGATTCAACCCAAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAA
CAAGACTTAAATTGCNCCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAATTGCTG
TCAATCATTGTATCNCCTTCACACTNTCAAGCNACAATCATCAGAAACTAGTGCTCTAGT
ACTTTTCATGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12051#0      CACTCGGTCACGCCTCGCAGCCCGCATCCCATCCCATCGCATCGCGTCGCACCGCACCGC 60
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      ACCGCAACCCGCCCAAACCCTAACCCTCGCGCCATCTCGTCCTCGCCGGCGTGCTCCGCC 120
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      GCCGCCGCCATGTCCGCCAGGCTGCTCCGGCGAGTGCTCCAGGAGCGGGAGACCGCCCCG 180
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      CAGGACCCTGCCGCCGCCGCCGCCGCCGCAGAGGTCGAGCGGGAGGAGGAGGAGGAGGCC 240
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TCCCCTCCCCGTGTCGCCGCCAGGAACCCCTTCGATCTCCTCGACGAAGAGGAGGAGGAA 300
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      GAGGAGGAGAAGGAAGATGAAGTGTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAA 360
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      CATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAA 420
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      AAGAAGAAAAAGAGCAAGGCAGACAAACAAGTGTCAACAAAGTCAAGGGATGAAAAGTCA 480
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      CTGGATTCAATTCTGGAAGATTTATCTATTGAAAAGAAGCCCATGCAGCAAAGAGTTAAT 540
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      CAAAATGAAAGAGCATCTGGGAAGGAGATTGAGATAGATGAAACCACTCCTGGGACATCA 600
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TCTATTCTCTCAATTGATCCCAAACATCTAAAAGCTGAAAATGAGATGAGGCGCATTTTT 660
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      GGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCA 720
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      AGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCA 780
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGT 840
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      GGTTTCAACTATTTCAGGTACATATATGATCCTTCTGTCAGTCATGTGCAAGACTTGTTT 900
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      GAAGTTGCCAAATCTGCAAATGATCTCAATGCTATTGCAGCTATATTAGCAAAGTACCCT 960
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TATCACCCAGAATCATTGTTAACATTTGCTGAACTTTTCAAATATTCTGGAGAACATCAA 1020
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TCGTCAGCAGATGCTGTTGAGAAGTGTCTATTTGCTCTGGAGTGTGCTTGGCATCCATTG 1080
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TTTAGCCCACTGCACAGCAACTGCCAGCTGAAATATAGCCATGACACAAACAAGCCATTC 1140
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TTTACTGCGCTTTTTAGTCACATGAAAAATTTGGATAGACGTGGCTGCCATCGGTCTGCT 1200
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TTAGAGGTCTGCAAATTCCTTCTTTCATTGGATTCTGATGATCCAAAGGGTGCTCTATTC 1260
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TGCATTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGTTGGAACAGTTTGCAGAA 1320
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      GAGTACCAGTGTGATAACTCCTTGTGGTTATTCCCTAATTTCTCATTTTCCCTTGCCATT 1380
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      GCACGGTTCTACGTTGAGCGTGATGCAACAAATGGGGAGGCTTCTGACCATTCTGACAAG 1440
consensus_12051#1      ------------------------------------------------------------
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TCAACATCTGTAGATCTCATGAAGCAAGCATTGATGCTTCATCCTTTGGTGCTGCGCAAG 1500
consensus_12051#1      -CGAGACAAGGGGATCTCATGAAGCAAGCATTGATGCTT-ATCCTTTGGTGCTGCGCAAG 58
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      ATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTC 1560
consensus_12051#1      ATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTC 118
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TTTGGATCAGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAA 1620
consensus_12051#1      TTTGGATCGGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAA 178
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      CGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTT 1680
consensus_12051#1      CGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTT 238
consensus_12051#2      ------------------------------------------------------------
                                                                                   

consensus_12051#0      TTGGTGATTGAATCACTAAAACAGGATAACAG-AGAGGCCCAGGACTGGGCATGTGTTAG 1739
consensus_12051#1      TTGGTGATTGGATCACTAAAACAGGATAACAGGAGAGGCCCAGGACTGGGCATGTGTTAG 298
consensus_12051#2      ------------------------------------GGCCCAGGANTGGGCATGTGTTAG 24
                                                           ********* **************

consensus_12051#0      AAAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTC 1799
consensus_12051#1      AAAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTC 358
consensus_12051#2      AAAAGAAGCATTNTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTNTC 84
                       ************ ******************************************** **

consensus_12051#0      CGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAAT 1859
consensus_12051#1      CGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAAT 418
consensus_12051#2      CGACACAACACCATNACTCCCCCCTGAAGAATTGCGNCCATTCATGGTTGCTCCTGGAAT 144
                       ************** ********************* ***********************

consensus_12051#0      GGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCC 1919
consensus_12051#1      GGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCC 478
consensus_12051#2      GGCACATGAGATGCCGCCAGNTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCC 204
                       ******************** ***************************************

consensus_12051#0      CCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGT 1979
consensus_12051#1      CCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGT 538
consensus_12051#2      CCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGT 264
                       ************************************************************

consensus_12051#0      TGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCC 2039
consensus_12051#1      TGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCC 598
consensus_12051#2      TGACTATGGTGACAATCATCATGACGAAAATGNCCAAAACAATGATGACTGATTCAACCC 324
                       ******************************** ***************************

consensus_12051#0      AAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCACCCATGTG 2099
consensus_12051#1      AAAGCACCAAGGGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCACCCATGTG 658
consensus_12051#2      AAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCNCCCATGTG 384
                       *********** *************************************** ********

consensus_12051#0      CTTTCCTGTCTCTATGATGATTAACACAAA-TTGCTGTCAATCATTGTATCACCTTCACA 2158
consensus_12051#1      CTTTCCTGTCTCTATGATGATTAACACAAAATTGCTGTCAATCATTGTATCACCTTCACA 718
consensus_12051#2      CTTTCCTGTCTCTATGATGATTAACACAAA-TTGCTGTCAATCATTGTATCNCCTTCACA 443
                       ****************************** ******************** ********

consensus_12051#0      CTCTCAAGCAACAATCATCAGAAACTAGTGCTCTAGTACTTTTCAT--GGTTTCGGCATA 2216
consensus_12051#1      CTCTCAAGCAACAATCATCAGAAACTAGNGCTCTAGNACTTTTTNATGGGTTTCGGCATA 778
consensus_12051#2      CTNTCAAGCNACAATCATCAGAAACTAGTGCTCTAGTACTTTTCAT--GGTTAAAAAAAA 501
                       ** ****** ****************** ******* ******     ****     * *

consensus_12051#0      CATGTATA-GCTGATCCACC-AAAATCTAAATCGCTGAAATATTAAGTCAATTTTGGGCC 2274
consensus_12051#1      CATGTNTAAGCTGATCCACCCAAAATCTAAATCGCTGAAAAAT----------------- 821
consensus_12051#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 531
                        *     *     *   *   ****   **                              

consensus_12051#0      TGGAAACATGAGAGATCAATGTGT 2298
consensus_12051#1      ------------------------
consensus_12051#2      ------------------------