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Oryza sativa
cluster # 12052 cluster # 12052       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12052#0 length = 821 sequences # 7  
consensus_12052#1 length = 452 sequences # 2  
consensus_12052#2 length = 134 sequences # 1  

consensusID : consensus_12052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 821
fasta sequence
                              [CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC-GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC-TACGAGGACATCTACGACGCCAAGAACGCCGTC-GACCACCT-CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA-AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA-ATAGTTTCCTATCAATGAAAATCACA-CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAGCCCCTTGAGTTGATATGCAATTATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCTTATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT]

[+] EMBL AK121661             [CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGGGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTAC                                                                                                                                                                                   ]
[+] EMBL AK059288             [      GAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTTTTAGGCCCCTTGAGTTGATATGCAATTATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCTTATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT]
[+] EMBL AU174529             [                         ATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGCGGGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCC                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI801098             [                                                                                                                                                                                          gtCGACATCTTC GCAAGTACGGCGCGATCCGCCAGATCC GCTGGGGAAC CCAAGGACACCAGGGGCACGGCCTTCGTCGTCGTACGAGGACATTTACGACGCCAAGAACGCCGTCGGACCACCTGCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCACAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTT CAGTTTGTGCTCGTGTGTTGTCTGTGCACATAGTTTCCTATCAATGAAAATCACACCAGCGGTATGTACTTTGACTGAAAGAACCATATGCCATGTGTACTTTGACTGGGAaaaaaaaaa                                                                                                                                                               ]
[+] EMBL BI800368             [                                                                                                                                                                                                                 CGCGATCCGCCAGATCC GCTGGGG ACGCCAAGGACACCAGGGGCACGCCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTT CAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCaaaaaaa                                                                                                                                                             ]
[+] EMBL CF327086             [                                                                                                                                                                                                                                                                                                                                                                                             gagtagaaACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGCTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAA                                                                                                                             ]
[-] EMBL CF327085             [                                                                                                                                                                                                                                                                                                                                                                                                               GAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGCTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAa                                                                                                                            ]


>consensus_12052#0 CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCC TAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGC CGCCGGAGGTGAACAGGGTGCTGTACGTGCGGAACCTGCCGTTCAACATCTCGAGCGAGG AGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCA AGGACACCAGGGGCACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCG TCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGC CGGCCAAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGC AGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTC ATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAAT CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA GCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGA TTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAGCCCCTTGAGTTGATATGCAATTA TGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCTT ATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT



consensusID : consensus_12052#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 452
fasta sequence
                              [CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAAAAAAAAAAAAAAAAAAAAAAAACTCGCGAC]

[+] EMBL AU174530             [CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAAAAAAAAAAAAAAAAAA              ]
[+] EMBL CA756828             [                                                                                                  ACTACCAGCCGGCCAAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGC GGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGCGAC]


>consensus_12052#1 CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTC CGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCAANATGTC CAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGG CCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGT TCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTG CTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGGTATGTACT TTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCT AAAAAAAAAAAAAAAAAAAAAAAACTCGCGAC



consensusID : consensus_12052#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence
                              [ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGTATGTAAAAA]

[+] EMBL AU173540             [ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGTATGTAAAAA]


>consensus_12052#2 ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAAT CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA GCGGTATGTAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12052#0      CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCC 60
consensus_12052#1      ------------------------------------------------------------
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      TAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGC 120
consensus_12052#1      ------------------------------------------------------------
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      CGCCGGAGGTGAACAGGGTGCTGTACGTGCGGAACCTGCCGTTCAACATCTCGAGCGAGG 180
consensus_12052#1      ------------------------------------------------------------
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      AGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCA 240
consensus_12052#1      ------------------------------------------------------------
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      AGGACACCAGGGGCACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCG 300
consensus_12052#1      -------------CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCG 47
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      TCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGC 360
consensus_12052#1      TCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGC 107
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      CGGCCAAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGC 420
consensus_12052#1      CGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGC 167
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      AGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTC 480
consensus_12052#1      AGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTC 227
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      ATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAAT 540
consensus_12052#1      ATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAAT 287
consensus_12052#2      ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAAT 60
                       ***************** *     *  *     * *************************

consensus_12052#0      CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 600
consensus_12052#1      CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 347
consensus_12052#2      CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 120
                       ************************************************************

consensus_12052#0      GCGG-TATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTG 659
consensus_12052#1      GCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTG 407
consensus_12052#2      GCGG-TATGTAAAAA--------------------------------------------- 134
                       **** ******                                                 

consensus_12052#0      ATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAGCCCCTTGAGTTGATATGCAATT 719
consensus_12052#1      ATTGGTAGCATCTAAAAAAAAAAA--AAAAAAAAAAAAACTCGCGAC------------- 452
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      ATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCT 779
consensus_12052#1      ------------------------------------------------------------
consensus_12052#2      ------------------------------------------------------------
                                                                                   

consensus_12052#0      TATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT 821
consensus_12052#1      ------------------------------------------
consensus_12052#2      ------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)