These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 821 fasta sequence [CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC-GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC-TACGAGGACATCTACGACGCCAAGAACGCCGTC-GACCACCT-CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA-AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA-ATAGTTTCCTATCAATGAAAATCACA-CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAGCCCCTTGAGTTGATATGCAATTATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCTTATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT] [+] EMBL AK121661 [CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGGGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTAC ] [+] EMBL AK059288 [ GAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTTTTAGGCCCCTTGAGTTGATATGCAATTATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCTTATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT] [+] EMBL AU174529 [ ATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGCGGGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCC ] [+] EMBL BI801098 [ gtCGACATCTTC GCAAGTACGGCGCGATCCGCCAGATCC GCTGGGGAAC CCAAGGACACCAGGGGCACGGCCTTCGTCGTCGTACGAGGACATTTACGACGCCAAGAACGCCGTCGGACCACCTGCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCACAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTT CAGTTTGTGCTCGTGTGTTGTCTGTGCACATAGTTTCCTATCAATGAAAATCACACCAGCGGTATGTACTTTGACTGAAAGAACCATATGCCATGTGTACTTTGACTGGGAaaaaaaaaa ] [+] EMBL BI800368 [ CGCGATCCGCCAGATCC GCTGGGG ACGCCAAGGACACCAGGGGCACGCCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTT CAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCaaaaaaa ] [+] EMBL CF327086 [ gagtagaaACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGCTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAA ] [-] EMBL CF327085 [ GAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGCTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAa ] consensusID : consensus_12052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence [CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAAAAAAAAAAAAAAAAAAAAAAAACTCGCGAC] [+] EMBL AU174530 [CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAAAAAAAAAAAAAAAAAA ] [+] EMBL CA756828 [ ACTACCAGCCGGCCAAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGC GGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGCGAC] consensusID : consensus_12052#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGTATGTAAAAA] [+] EMBL AU173540 [ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGTATGTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12052#0 CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCC 60 consensus_12052#1 ------------------------------------------------------------ consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 TAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGC 120 consensus_12052#1 ------------------------------------------------------------ consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 CGCCGGAGGTGAACAGGGTGCTGTACGTGCGGAACCTGCCGTTCAACATCTCGAGCGAGG 180 consensus_12052#1 ------------------------------------------------------------ consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 AGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCA 240 consensus_12052#1 ------------------------------------------------------------ consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 AGGACACCAGGGGCACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCG 300 consensus_12052#1 -------------CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCG 47 consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 TCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGC 360 consensus_12052#1 TCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGC 107 consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 CGGCCAAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGC 420 consensus_12052#1 CGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGC 167 consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 AGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTC 480 consensus_12052#1 AGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTC 227 consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 ATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAAT 540 consensus_12052#1 ATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAAT 287 consensus_12052#2 ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAAT 60 ***************** * * * * ************************* consensus_12052#0 CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 600 consensus_12052#1 CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 347 consensus_12052#2 CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 120 ************************************************************ consensus_12052#0 GCGG-TATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTG 659 consensus_12052#1 GCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTG 407 consensus_12052#2 GCGG-TATGTAAAAA--------------------------------------------- 134 **** ****** consensus_12052#0 ATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAGCCCCTTGAGTTGATATGCAATT 719 consensus_12052#1 ATTGGTAGCATCTAAAAAAAAAAA--AAAAAAAAAAAAACTCGCGAC------------- 452 consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 ATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCT 779 consensus_12052#1 ------------------------------------------------------------ consensus_12052#2 ------------------------------------------------------------ consensus_12052#0 TATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT 821 consensus_12052#1 ------------------------------------------ consensus_12052#2 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||