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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1140 fasta sequence
[GCAAACTCAACAAAAAGGAGTATGTGTTCAGAGAGCCAAGAGATGTTCGTCTTGGTGACATAATGGAGAAGCTTAGTCATATCTATGAGGCTAAAATGGATGGCAATCACACCTTACACATCATTCCGGATTCGAGACAAGTCAACGCTGATGAGTTGCAACCTGGTGTCTGCTATCTGCAGATAACTGCTGTTGATCCTGTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGATTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATACACCATTCACAAAGAATGGAAAAACACAAGGTGGCCTTGAAGATCAGTGGAAGAGGCGCACAGTACTCCAGACAGAGGGTTCCTTTCCTGCTTTGGTGAATCGTCTGTTAGTGATCAAATCAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAGCTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT-AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT-AACTGTATTCTAGCAAGCTGGC-AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT-AGGCTTT-TCAATTC-TGTTCTGTTTGCAATGCCGTG-CCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTCGAGTGGACAAAAAAAATCATCTGGAGTGATAAAAAAAAAA]
[+] EMBL AK059469 [GCAAACTCAACAAAAAGGAGTATGTGTTCAGAGAGCCAAGAGATGTTCGTCTTGGTGACATAATGGAGAAGCTTAGTCATATCTATGAGGCTAAAATGGATGGCAATCACACCTTACACATCATTCCGGATTCGAGACAAGTCAACGCTGATGAGTTGCAACCTGGTGTCTGCTATCTGCAGATAACTGCTGTTGATCCTGTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGATTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATACACCATTCACAAAGAATGGAAAAACACAAGGTGGCCTTGAAGATCAGTGGAAGAGGCGCACAGTACTCCAGACAGAGGGTTCCTTTCCTGCTTTGGTGAATCGTCTGTTAGTGATCAAATCAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAGCTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT AACTGTATTCTAGCAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTAT ]
[+] EMBL CA999629 [ AGCTTAGTCATATCTATGAGGCTAAAATGGATGGCAATCACACCTTACACATCATTCCGGATTCGAGACAAGTCAACGCTGATGAGTTGCAACCTGGTGTCTGCTATCTGCAGATAACTGCTGTTGATCCTGTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGATTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATACACCATTCACAAAGAAT ]
[+] EMBL AU031318 [ GTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGATTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATACACCATTCACAAAGAATGGAAAAACACAAGGTGGCCTTGAAGATCAGTGGAAGAGGCGCACAGTACTCCAGACAGAGGGTTCCTTTCCTGCTTTGGTGAATCGTCTGTTAGTGATCAAATCAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAGCTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACANTCAACT AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTNTCACACTATATTCCTGCAATTCTTTCAGAGCTATAAACTGTATTCTAGCAAGCTGGCAAAGTAGGTAGCATTTGAAT ]
[+] EMBL AU068629 [ TCTGTTAGTGATCAAATCAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAGCTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT AACTGTATTCTAGCAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTCGAGTGGACAAAAAAAA ]
[+] EMBL AU030634 [ AAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAANTNGGGCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT AACTGTATTCTAGCAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTCGAGTGAAAAA ]
[+] EMBL CA765043 [ GAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACAAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATACGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT AACTGTATTCTAGCAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTT GGGGTGTAAAGCTTGTGTAATCCTTAGNGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTC ]
[+] EMBL CA753078 [ CAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATCAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATACGTGTGCATATTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT AGTCAATGGCTTCCAGTCGCTCACAGCTGAGCTTTCACACTATATGCCTGCAATTCTTTCAGAGCTAT AACTGTATCCTAGCAAGCTGGG CAGTAAGTAGCATGTGAATGGTTCATTCTTTCCGTTGGGGCTCCCCCCCTTGTCCTTAATTCCGTTAGTGTGGTTGTATAGTTCTGGAAAACTAACTAAGGCTTTCCCATTTCGTGTTCTGTTTGGCATGCCCTGCCCCCCATTTTGGGGGTGTt ]
[+] EMBL BQ908361 [ CAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTT GGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTCGAGTGGACAGTTGTGTTCATCTGGAGTGATAAAAAAAAAA]
consensusID : consensus_12072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 583 fasta sequence
[AAGGAAAGTTTGGCTNTTCAGGTAATAAGTGGTGTATTAAGTGTGTGCACTGCATTCTTAATCTGGTGACCCCGCAACTAGGCNCCGATCTCAAGAACTGNCAGCAGCTCATCCGCTGCATGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATGGCTTTCAGTCGCTCACAGCTGAGCT-TTCACACTATATTCCT-GCAATTCTTTCAGAGCTATAACTGT-ATTCTAGCAAGCTGGCAAGT-AGGTAGCATTTGAATGGTTCATTCTTT-CAGTTGGGGCTCCCCA-CCT-TGTCCATAATTCCGTTAGTTT-GGTTGTATAGTTCT-GGAAAACTAACTAGGCTT-TT-CAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCNGTAACTATTCGNGTGGACAGTTGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031319 [AAGGAAAGTTTGGCTNTTCAGGTAATAAGTGGTGTATTAAGTGTGTGCACTGCATTCTTAATCTGGTGACCCCGCAACTAGGCNCCGATCTCAAGAACTGNCAGCAGCTCATCCGCTGCATGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATGGCTTTCAGTCGCTCACAGCTGAGCT TTCACACTATATTCCT GCAATTCTTTCAGAGCTATAACTGT ATTCTAGCAAGCTGGCAAGT AGGTAGCATTTGAATGGTTCATTCTTT CAGTTGGGGCTCCCCA CCT TGTCCATAATTCCGTTAGTTT GGTTGTATAGTTCT GGAAAACTAACTAGGCTT TT CAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCNGTAACTATTCGNGTGGACAGTTGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL BU667226 [ ATGGCTTTCAGTCGCTCACAGCTGAGCTGTTCACACTATATTCCTCGCAATTCTTTCAGAGCTATAACTGTGATTCTAGCAAGCTGGCAAGTGAGGTAGCATTTGAATGGTTCATTCTTTCCAGTTGGGGCTCCCCACCCTGTGTCCATAATTCCGTTAGTTTGGGTTGTATAGTTCTGGGAAAACTAACTAGGCTTGTTGCAATTCTGTTCTGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12072#0 GCAAACTCAACAAAAAGGAGTATGTGTTCAGAGAGCCAAGAGATGTTCGTCTTGGTGACA 60
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 TAATGGAGAAGCTTAGTCATATCTATGAGGCTAAAATGGATGGCAATCACACCTTACACA 120
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 TCATTCCGGATTCGAGACAAGTCAACGCTGATGAGTTGCAACCTGGTGTCTGCTATCTGC 180
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 AGATAACTGCTGTTGATCCTGTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGA 240
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 TTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATA 300
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 CACCATTCACAAAGAATGGAAAAACACAAGGTGGCCTTGAAGATCAGTGGAAGAGGCGCA 360
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 CAGTACTCCAGACAGAGGGTTCCTTTCCTGCTTTGGTGAATCGTCTGTTAGTGATCAAAT 420
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 CAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAG 480
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 CTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGAC 540
consensus_12072#1 ------------------------------------------------------------
consensus_12072#0 TCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTAT 600
consensus_12072#1 -----------------------AAGGAAAGTTTGGCTNTTCAGGTAATAAGTGGTGTAT 37
* * **** ***** ********* **********
consensus_12072#0 TAAGTGTGTGCACTGCATTCTTA-TCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAA 659
consensus_12072#1 TAAGTGTGTGCACTGCATTCTTAATCTGGTGACCCCGCAACTAGGCNCCGATCTCAAGAA 97
*********************** ******** ************* *************
consensus_12072#0 CTGC-AGCAGCTCATC-GCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCC 717
consensus_12072#1 CTGNCAGCAGCTCATCCGCTGCAT-GCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCC 156
*** *********** ******* ***********************************
consensus_12072#0 GTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATG 777
consensus_12072#1 GTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATG 216
************************************************************
consensus_12072#0 GCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT 837
consensus_12072#1 GCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT 276
************************************************************
consensus_12072#0 AACTGTATTCTAGCAAGCTGGCAAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGG 897
consensus_12072#1 AACTGTATTCTAGCAAGCTGGCAAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGG 336
************************************************************
consensus_12072#0 GGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACTA 957
consensus_12072#1 GGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACTA 396
************************************************************
consensus_12072#0 GGCTTTTCAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTG 1017
consensus_12072#1 GGCTTTTCAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTG 456
************************************************************
consensus_12072#0 TGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGC 1077
consensus_12072#1 TGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGC 516
************************************************************
consensus_12072#0 AAGCTATATAGCAGTAACTATTCGAGTGGACAAAAAAAATCATCTGGAGTGATAAAAAAA 1137
consensus_12072#1 AAGCTATATAGCNGTAACTATTCGNGTGGACAGTTGTGTTCAAAAAAAAAAAAAAAAAAA 576
************ *********** ******* *** * * *******
consensus_12072#0 AAA---- 1140
consensus_12072#1 AAAAAAA 583
***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||